- Transcript 'Boschl.CG.Botznik201...' >
- EST 'AHC0AAA223YG22_RM1' >
- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'Boleac.CG.SB_v3.S124...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S18.g06459.01.t
Possible name(s)
STRN; STRN3; STRN4
Gene model
Location
S18 [360,240 / 367,836]
Amino acid sequence
Length: 606
>Harore.CG.MTP2014.S18.g06459.01.p
MNYSVADMEVRDFLGNGQNGVLNNDEQMSESKSGYTMPGILHFIQHEWSRFEMDRAQWEV
ERAELQARIAFLQGERKGQENLKRDLVRRIKMLEFALKQERAKLQKYKFGTDYTNEQKPS
ESTDLKINEELPPTNSQMSWRQGRQLLRQYLQEVGYSDTILDVRSQRVRALLGKSYDATS
PSFSAEKDGRILNGMSENEENMQAVDSTHPGKEPTEADVMTNFDFLSGSLSDDRDEEMED
AEDDDEVDGGGDQQRKPRSKTVTDPRVTDWQVDRNKLNAKKEKFKEEKRHSKKKGLNRPD
KKDLQNMLETLRGSSGIPSIDIESKRNEEDSLPFTVGGTRSTVLGEDAMDNALRLGELAG
LTVTNEADPLTYDVSSTKDSFRKTWSPKFTLRSHLDGIRCVAFLPADPAVITASEDNTLK
LWNLSKTVPSKKSQALDVEPIYSFRGHIPTSVQFVCCDSGQAVVSHSDGKILIYDLETGQ
IPAMLADSDDCLVSYVVSHPTMPVTISAHDDRHIRFYDNNSGKMIHSMVAHLDAVTSLAV
DPNGLYLLSGSHDCSIRLWNLDSKTCVQEITAHRKKFDESIFSVAFHPSASYIASAGADA
LAKVFV
Nucleotide sequence
Length: 1,870
>Harore.CG.MTP2014.S18.g06459.01.t
TTTTGAAAATAGTACACTAGACGAACTTGTCCTTAAAGCGGAAAATTAAATGAATTATTC
CGTCGCTGACATGGAGGTCCGAGATTTTTTAGGAAATGGTCAGAATGGTGTGCTGAATAA
TGATGAACAAATGAGCGAATCTAAATCGGGATACACCATGCCGGGGATTCTACACTTCAT
CCAACACGAATGGTCACGTTTTGAAATGGACAGGGCGCAATGGGAAGTTGAGAGAGCTGA
ACTACAGGCCCGTATCGCTTTTCTACAAGGTGAAAGGAAGGGCCAGGAAAATCTGAAACG
TGATCTGGTTCGACGTATTAAAATGCTTGAATTCGCACTAAAGCAAGAAAGAGCAAAACT
GCAAAAGTACAAGTTTGGTACAGATTACACCAACGAACAAAAGCCCAGCGAATCGACTGA
CTTGAAAATCAATGAAGAACTTCCGCCGACCAATTCTCAAATGTCTTGGAGGCAAGGAAG
ACAGTTGCTTAGACAATATCTTCAGGAGGTCGGATATAGCGACACTATTCTGGACGTGCG
ATCACAGAGAGTTCGAGCTCTCTTAGGCAAAAGCTATGATGCGACGTCTCCTTCTTTCTC
TGCAGAAAAAGACGGACGCATCTTGAACGGGATGTCAGAAAATGAAGAAAACATGCAGGC
TGTTGATTCTACTCATCCCGGCAAGGAGCCGACGGAGGCCGATGTCATGACCAACTTTGA
TTTTCTGAGCGGATCTTTGAGCGACGATAGAGATGAAGAGATGGAAGATGCAGAAGACGA
CGATGAGGTGGATGGAGGAGGTGACCAACAAAGAAAACCAAGATCAAAAACTGTAACTGA
CCCGAGAGTAACGGATTGGCAAGTTGATCGGAATAAACTTAATGCCAAGAAGGAGAAATT
CAAAGAGGAAAAAAGGCACTCGAAAAAGAAAGGACTCAATCGTCCAGACAAAAAAGATTT
ACAGAACATGCTGGAGACGTTAAGAGGATCCAGTGGGATTCCTTCAATTGATATAGAGAG
TAAAAGAAATGAAGAAGATAGCCTACCATTCACTGTTGGTGGAACGCGTAGTACTGTTTT
AGGTGAAGACGCCATGGACAACGCACTGAGATTGGGTGAGCTTGCCGGACTTACAGTAAC
CAATGAGGCTGATCCATTAACGTATGATGTCTCCTCCACTAAAGATTCCTTCAGAAAAAC
CTGGTCACCAAAGTTTACTTTACGGAGTCACCTCGATGGCATACGTTGCGTGGCTTTTTT
GCCAGCTGACCCGGCCGTCATCACTGCCTCGGAGGACAACACGCTGAAACTATGGAACTT
AAGCAAGACAGTCCCGAGCAAAAAATCGCAAGCGCTTGACGTCGAGCCGATTTACAGTTT
CCGGGGACACATCCCTACATCGGTCCAGTTCGTCTGTTGTGATTCTGGGCAGGCAGTTGT
GTCTCATTCAGATGGGAAAATCCTCATTTATGATCTGGAGACGGGACAGATTCCTGCCAT
GCTGGCTGATTCTGATGACTGTCTTGTCAGCTATGTCGTTAGCCACCCAACGATGCCTGT
CACAATATCTGCCCATGACGATAGACACATACGCTTCTATGACAATAATTCCGGAAAAAT
GATTCATTCTATGGTGGCCCACCTCGACGCTGTGACAAGTTTGGCTGTTGACCCGAATGG
TCTTTATTTACTATCAGGAAGCCATGATTGTTCTATCCGTCTTTGGAATTTGGACAGCAA
AACCTGCGTACAGGAAATCACAGCCCATAGGAAAAAATTCGACGAATCCATCTTCTCTGT
TGCTTTCCATCCCTCGGCTTCGTATATCGCCAGCGCGGGTGCTGACGCTCTGGCCAAAGT
ATTTGTGTGA
| Pfam |
Striatin_N (IPR013258) - T[36-162] 3.4E-45 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[370-450] 1.7E-8 - T[451-605] 7.3E-34 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[384-604] 1.31E-43 |
| SMART |
WD40_repeat (IPR001680) - T[384-423] 6.9E-8 - T[437-475] 1.9 - T[478-518] 34.0 - T[521-560] 6.1E-10 - T[563-606] 2.1E-4 |
| Pfam |
WD40_repeat (IPR001680) - T[386-423] 3.7E-5 - T[439-475] 0.24 - T[523-560] 3.9E-8 - T[565-600] 0.024 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[391-425] 13.483 - T[528-569] 15.688 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[391-606] 28.924 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[410-424] . - T[547-561] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| STRN3_HUMAN | 40.783 % | 394 | 9.55E-128 |
| STRN_HUMAN | 41.385 % | 399 | 5.03E-130 |
| STRN4_HUMAN | 38.38 % | 317 | 9.19E-99 |