- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'Boleac.CG.SB_v3.S124...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S18.g06459.02.t
Possible name(s)
STRN; STRN3; STRN4
Gene model
Location
S18 [360,428 / 367,787]
Amino acid sequence
Length: 704
>Harore.CG.MTP2014.S18.g06459.02.p
MNYSVADMEVRDFLGNGQNGVLNNDEQMSESKSGYTMPGILHFIQHEWSRFEMDRAQWEV
ERAELQARIAFLQGERKGQENLKRDLVRRIKMLEFALKQERAKLQKYKFGTDYTNEQKPS
ESTDLKINEELPPTNSQMSWRQGRQLLRQYLQEVGYSDTILDVRSQRVRALLGKSYDATS
PSFSAEKDGRILNGMSENEENMQAVDSTHPGKEPTEADVMTNFDFLSGSLSDDRDEEMED
AEDDDEVDGGGDQQRKPRSKTIDDDENFLEMDAAVDDVTDTDSALAEFDFLSATDDNDIA
DPRVTDWQVDRNKLNAKKEKFKEEKRHSKKKGLNRPDKKDLQNMLETLRGSSGIPSIDIE
SKRNEEDSLPFTVGGTRSTVLGEDAMDNALRLGELAGLTVTNEADPLTYDVSSTKDSFRK
TWSPKFTLRSHLDGIRCVAFLPADPAVITASEDNTLKLWNLSKTVPSKKSQALDVEPIYS
FRGHIGSVLSLAIDCEGVVCYSGGVDSSIRMWNIPSRHIDPYDTYVSSVTGKVLVGHTDS
VWSLSYSGTRHHLLSASADTTVRLWDPQSSDPLIRTFAAPGGSSPTSVQFVCCDSGQAVV
SHSDGKILIYDLETGQIPAMLADSDDCLVSYVVSHPTMPVTISAHDDRHIRFYDNNSGKM
IHSMVAHLDAVTSLAVDPNGLYLLSGSMFSTSIYFTLNIYIGKP
Nucleotide sequence
Length: 2,115
>Harore.CG.MTP2014.S18.g06459.02.t
ATGAATTATTCCGTCGCTGACATGGAGGTCCGAGATTTTTTAGGAAATGGTCAGAATGGT
GTGCTGAATAATGATGAACAAATGAGCGAATCTAAATCGGGATACACCATGCCGGGGATT
CTACACTTCATCCAACACGAATGGTCACGTTTTGAAATGGACAGGGCGCAATGGGAAGTT
GAGAGAGCTGAACTACAGGCCCGTATCGCTTTTCTACAAGGTGAAAGGAAGGGCCAGGAA
AATCTGAAACGTGATCTGGTTCGACGTATTAAAATGCTTGAATTCGCACTAAAGCAAGAA
AGAGCAAAACTGCAAAAGTACAAGTTTGGTACAGATTACACCAACGAACAAAAGCCCAGC
GAATCGACTGACTTGAAAATCAATGAAGAACTTCCGCCGACCAATTCTCAAATGTCTTGG
AGGCAAGGAAGACAGTTGCTTAGACAATATCTTCAGGAGGTCGGATATAGCGACACTATT
CTGGACGTGCGATCACAGAGAGTTCGAGCTCTCTTAGGCAAAAGCTATGATGCGACGTCT
CCTTCTTTCTCTGCAGAAAAAGACGGACGCATCTTGAACGGGATGTCAGAAAATGAAGAA
AACATGCAGGCTGTTGATTCTACTCATCCCGGCAAGGAGCCGACGGAGGCCGATGTCATG
ACCAACTTTGATTTTCTGAGCGGATCTTTGAGCGACGATAGAGATGAAGAGATGGAAGAT
GCAGAAGACGACGATGAGGTGGATGGAGGAGGTGACCAACAAAGAAAACCAAGATCAAAA
ACTATTGATGATGACGAAAACTTCTTGGAGATGGATGCCGCGGTAGACGATGTAACTGAT
ACGGATTCTGCCTTGGCAGAATTCGATTTTCTCTCTGCCACCGATGATAATGATATAGCT
GACCCGAGAGTAACGGATTGGCAAGTTGATCGGAATAAACTTAATGCCAAGAAGGAGAAA
TTCAAAGAGGAAAAAAGGCACTCGAAAAAGAAAGGACTCAATCGTCCAGACAAAAAAGAT
TTACAGAACATGCTGGAGACGTTAAGAGGATCCAGTGGGATTCCTTCAATTGATATAGAG
AGTAAAAGAAATGAAGAAGATAGCCTACCATTCACTGTTGGTGGAACGCGTAGTACTGTT
TTAGGTGAAGACGCCATGGACAACGCACTGAGATTGGGTGAGCTTGCCGGACTTACAGTA
ACCAATGAGGCTGATCCATTAACGTATGATGTCTCCTCCACTAAAGATTCCTTCAGAAAA
ACCTGGTCACCAAAGTTTACTTTACGGAGTCACCTCGATGGCATACGTTGCGTGGCTTTT
TTGCCAGCTGACCCGGCCGTCATCACTGCCTCGGAGGACAACACGCTGAAACTATGGAAC
TTAAGCAAGACAGTCCCGAGCAAAAAATCGCAAGCGCTTGACGTCGAGCCGATTTACAGT
TTCCGGGGACACATAGGTTCTGTTCTCTCATTGGCCATTGACTGTGAGGGCGTCGTTTGC
TACAGCGGTGGTGTTGATTCAAGCATTCGAATGTGGAACATTCCCAGTCGTCACATCGAC
CCATATGACACTTATGTTTCTTCTGTCACTGGAAAAGTCCTTGTGGGACATACCGACTCT
GTTTGGAGCTTGTCGTATAGCGGCACTCGACATCATTTGTTGTCTGCCTCTGCAGACACT
ACAGTTCGTCTCTGGGATCCACAATCTTCAGATCCATTGATAAGAACATTTGCTGCACCA
GGGGGCTCAAGCCCTACATCGGTCCAGTTCGTCTGTTGTGATTCTGGGCAGGCAGTTGTG
TCTCATTCAGATGGGAAAATCCTCATTTATGATCTGGAGACGGGACAGATTCCTGCCATG
CTGGCTGATTCTGATGACTGTCTTGTCAGCTATGTCGTTAGCCACCCAACGATGCCTGTC
ACAATATCTGCCCATGACGATAGACACATACGCTTCTATGACAATAATTCCGGAAAAATG
ATTCATTCTATGGTGGCCCACCTCGACGCTGTGACAAGTTTGGCTGTTGACCCGAATGGT
CTTTATTTACTATCAGGAAGTATGTTTTCGACATCAATATATTTTACTCTTAATATTTAC
ATTGGCAAACCTTGA
| Pfam |
Striatin_N (IPR013258) - T[36-162] 3.3E-45 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[398-519] 3.4E-18 - T[520-695] 2.0E-30 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[420-691] 1.0E-48 |
| SMART |
WD40_repeat (IPR001680) - T[421-460] 6.9E-8 - T[474-513] 9.7E-6 - T[527-566] 2.6E-7 - T[570-611] 3.9 - T[614-654] 34.0 - T[657-697] 0.68 |
| Pfam |
WD40_repeat (IPR001680) - T[423-460] 4.5E-5 - T[476-513] 2.9E-4 - T[532-566] 5.5E-5 - T[659-687] 0.016 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[428-462] 13.483 - T[481-514] 11.077 - T[534-575] 14.786 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[428-687] 30.848 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[447-461] . - T[500-514] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[447-461] 9.7E-6 - T[500-514] 9.7E-6 - T[553-567] 9.7E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| STRN3_HUMAN | 50.358 % | 642 | 0 |
| STRN_HUMAN | 48.498 % | 605 | 0 |
| STRN4_HUMAN | 45.508 % | 507 | 8.2E-171 |