- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S18.g11909.01.t
Possible name(s)
CSMD1; SELE; SELP
Gene model
Location
S18 [250,628 / 256,253]
Amino acid sequence
Length: 1,052
>Harore.CG.MTP2014.S18.g11909.01.p
MRILVLVGVFILGSSIGQALRCQNCNNAKSDEHCEAIGYVETCQNNQESCKIEIRIHDGQ
ETPSITKRCKQEIACANNELQNKAADGISSQCNKDNTVCRCCCNTDLCNVKSLCGIKKKN
EREGRNDKASQCRELAVPENGKKLCSGSTNVIGTLCDFTCNEGFELIGEAMIACQEINIG
VTWTSVLPVCEKRDKRCENITNIDDGSLFCDGNAIGDQCLLLCNQGFRGPPQITCDWPDW
NIKNPQCLHAINKTFPRTAKNNAPTVTTWLVYVSLLARSASGLTVATAVNVKTENHGRMF
TESGLQILLFVEVLRLLLIRLSDVKLSFLAFTILLFPVVTCVAQQFPENGMKTCTNGNKW
KSVCNFSCDSGYKLEGNAISTCHDEDDVNNNEYGKWNSDPPTCKKIECKKLVDIANGKVV
CSQNSVGIKCIHTCNKGYKLRGRKELKCLDGKGQYDGYDYPQPVCTKTRCNPIGPINDGK
VNCSNSNFHGSVCKFTCRVGCWRKGAELSVCGKVENESWSDVKPTCEAVNCVTHKIIKNG
NKQCTNGTRWNSECSFFCDAGYWLNGSNVSTCTHIGNQPGGEWTSERPICKAKRCNDQLV
SPKYGTISCSQGRIHGSICRFSCKDGFELLGKDSAICNVPTNDIKFSKWSEQVPVCRQVK
CKKHIAQEHGEIRCSNGNYYKSFCNHTCNKGYKLTSYPATECLGKPGKYGGWNRPQPMCK
RVCGDVDNLPHGMVKCSDRNFEGSECQLNCTDVDYELHPTGMNTRTCMNDGTWSNEDLCC
AWKCPPNAYMDMVIILDSSSSIGKENWEIMKAFISEFVGLFTWGNSFSRFAAFRYNKVVD
EDTVIMWDNHDNATFFRNKLLSMPYDGSGTNTRDALKYGLKFITDLSRQDAIKVMLLVTD
GISQTSVDSIARRLRNQDDVNQFLCSPFLTPEVPDHPNSFKIQPCPNNFHFKPTNVKYSL
QNSIFIPYYVQVFVLPVLPARFQKMQDGEKKENFVKDMITQMEVIAGSRKNIMEEAYKAT
EDGFGALMEDELIKKMATFLCGNPCHHPAHNH
Nucleotide sequence
Length: 3,159
>Harore.CG.MTP2014.S18.g11909.01.t
ATGCGTATTCTTGTACTCGTCGGAGTCTTCATTTTAGGATCGAGTATTGGCCAAGCGTTG
AGATGCCAAAACTGCAACAACGCAAAGAGCGACGAGCACTGCGAAGCCATTGGTTATGTG
GAAACTTGTCAGAATAATCAAGAATCCTGCAAGATCGAGATCCGAATTCATGACGGACAG
GAGACTCCGTCAATTACCAAACGATGCAAGCAAGAAATCGCTTGCGCCAATAATGAACTC
CAGAACAAAGCGGCCGATGGAATCAGTTCACAATGCAATAAAGATAATACAGTATGTCGA
TGCTGCTGTAATACTGACTTGTGTAACGTGAAGTCGCTTTGCGGTATAAAAAAGAAAAAC
GAACGAGAGGGAAGGAATGACAAAGCATCTCAATGTAGAGAATTAGCGGTTCCAGAAAAC
GGCAAGAAGTTATGCTCTGGATCTACGAATGTTATTGGTACGCTCTGCGATTTTACTTGC
AACGAAGGCTTCGAGCTGATTGGAGAGGCAATGATTGCTTGCCAAGAAATCAATATCGGT
GTAACTTGGACATCTGTACTGCCAGTTTGCGAAAAACGCGATAAACGATGTGAAAACATT
ACAAATATTGACGATGGTTCCTTGTTCTGTGACGGCAATGCGATTGGAGACCAATGTTTA
TTATTGTGCAACCAGGGTTTTCGTGGACCCCCGCAAATCACATGCGACTGGCCAGACTGG
AACATCAAAAATCCACAGTGCTTGCATGCAATCAACAAAACATTCCCGCGAACGGCGAAA
AACAATGCACCAACGGTAACAACCTGGCTAGTGTATGTAAGTTTACTTGCGAGGTCGGCT
TCTGGCTTGACGGTAGCGACAGCAGTGAATGTGAAGACGGAGAACCATGGCCGAATGTTT
ACGGAAAGTGGACTTCAGATCCTCCTGTTTGTCGAGGTTCTTAGATTATTATTGATTCGA
TTATCCGATGTAAAACTTTCGTTCCTTGCATTCACGATATTACTCTTTCCAGTTGTAACG
TGTGTCGCGCAACAATTCCCTGAAAACGGAATGAAGACATGTACCAACGGAAATAAGTGG
AAAAGCGTATGCAATTTTTCTTGCGATTCCGGTTACAAACTGGAGGGCAATGCCATATCG
ACGTGCCACGATGAAGACGATGTGAACAATAACGAATATGGAAAATGGAATTCAGACCCG
CCTACATGCAAAAAAATAGAATGCAAAAAACTAGTCGATATCGCAAATGGAAAAGTCGTA
TGCAGTCAAAATTCCGTAGGAATAAAATGCATTCACACTTGTAACAAGGGATATAAACTT
CGGGGACGAAAGGAACTCAAATGTCTAGATGGTAAAGGGCAGTATGATGGTTATGACTAT
CCTCAACCAGTATGTACAAAAACCCGATGCAACCCAATAGGACCCATCAATGATGGTAAA
GTTAACTGCAGTAACAGCAACTTCCATGGAAGCGTTTGTAAATTTACGTGTCGTGTTGGT
TGTTGGCGAAAAGGAGCAGAATTATCAGTCTGTGGAAAAGTAGAAAATGAGAGCTGGAGT
GACGTAAAACCTACTTGTGAAGCTGTTAATTGTGTAACTCACAAAATCATCAAGAATGGC
AACAAGCAATGCACTAATGGAACCAGGTGGAATAGTGAATGCAGTTTTTTCTGCGATGCT
GGGTATTGGCTGAACGGAAGCAATGTATCGACTTGTACACATATCGGTAATCAACCCGGC
GGAGAATGGACATCTGAGCGTCCTATCTGCAAAGCCAAGAGATGCAATGACCAATTAGTA
AGCCCAAAGTATGGCACAATTTCATGTAGCCAAGGCAGAATACATGGTAGCATATGCAGA
TTCAGCTGCAAGGACGGATTCGAACTTCTTGGGAAAGACTCGGCTATATGCAATGTCCCT
ACCAATGACATAAAATTTTCCAAATGGTCTGAGCAAGTTCCAGTTTGCAGACAGGTCAAA
TGTAAGAAACATATAGCACAGGAACATGGAGAAATCAGGTGCAGCAATGGCAATTATTAC
AAAAGTTTCTGCAATCACACTTGCAATAAAGGGTATAAACTCACATCCTATCCTGCAACA
GAATGTTTGGGAAAACCAGGGAAATATGGAGGTTGGAACCGCCCACAACCAATGTGCAAA
CGTGTGTGTGGAGATGTAGATAATTTACCGCACGGCATGGTAAAATGCAGCGATAGAAAC
TTTGAAGGATCCGAGTGCCAACTGAATTGCACGGATGTGGATTACGAATTACACCCCACT
GGCATGAATACAAGGACTTGCATGAATGATGGAACATGGAGCAATGAAGATTTGTGTTGT
GCATGGAAATGTCCTCCAAATGCATATATGGACATGGTAATTATCCTGGATTCTTCATCT
TCAATCGGAAAAGAAAACTGGGAGATCATGAAAGCGTTTATTAGTGAATTCGTAGGACTG
TTCACATGGGGTAATTCATTCTCTCGCTTCGCCGCATTCCGGTACAACAAAGTAGTCGAT
GAGGATACTGTTATTATGTGGGATAACCATGACAACGCAACCTTTTTCCGTAACAAGCTT
TTGTCAATGCCTTACGATGGTTCTGGAACGAACACAAGAGACGCTCTTAAATATGGCTTG
AAATTTATCACGGATTTAAGCAGACAAGATGCAATTAAAGTTATGTTACTTGTGACTGAT
GGAATATCCCAAACGAGCGTCGACAGTATCGCAAGAAGGTTACGGAACCAAGATGACGTG
AATCAGTTTTTATGCAGCCCCTTTCTTACCCCAGAGGTACCAGACCACCCAAATTCCTTT
AAAATTCAGCCATGTCCGAATAATTTTCATTTTAAGCCTACCAATGTTAAATATTCACTT
CAAAACTCTATATTTATACCTTATTATGTTCAGGTCTTTGTTCTTCCTGTCCTTCCCGCA
AGGTTTCAAAAGATGCAAGACGGCGAGAAAAAAGAAAACTTCGTCAAAGACATGATCACT
CAGATGGAAGTGATAGCCGGTAGTCGGAAAAACATTATGGAAGAAGCATACAAGGCAACA
GAGGATGGTTTTGGTGCTCTTATGGAAGACGAACTGATTAAGAAAATGGCTACATTTTTG
TGCGGCAACCCATGTCATCATCCAGCCCATAATCATTGA
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[130-192] 9.773 - T[195-249] 6.314 - T[339-405] 8.769 - T[406-467] 7.619 - T[468-528] 8.427 - T[529-592] 8.924 - T[593-658] 8.562 - T[659-721] 8.127 - T[725-782] 6.2 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[130-192] 1.21E-11 - T[196-251] 1.95E-6 - T[339-417] 5.84E-13 - T[406-479] 1.53E-10 - T[469-540] 2.36E-9 - T[529-598] 3.61E-11 - T[600-670] 6.25E-10 - T[655-723] 8.06E-9 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[132-190] 2.2E-10 - T[197-247] 0.15 - T[341-403] 3.0E-8 - T[408-465] 7.2E-8 - T[470-526] 0.0054 - T[531-590] 4.4E-7 - T[595-656] 2.1E-5 - T[661-719] 8.1E-4 - T[723-779] 0.085 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[132-190] 8.6E-4 - T[341-403] 3.1E-6 - T[408-465] 0.0016 - T[531-590] 3.0E-5 - T[723-776] 4.9E-4 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[132-191] 2.40251E-10 - T[341-404] 5.24832E-9 - T[408-465] 8.64508E-6 - T[470-527] 2.0736E-5 - T[531-591] 1.31818E-8 - T[597-657] 9.67231E-7 - T[661-720] 8.9917E-6 - T[723-776] 9.43287E-5 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[749-918] 2.74E-28 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[784-923] 2.5E-25 |
| SMART |
VWF_A (IPR002035) - T[789-964] 1.3E-17 |
| Pfam |
VWF_A (IPR002035) - T[791-921] 1.4E-19 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[791-923] 15.8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LYAM3_HUMAN | 26.739 % | 163 | 3.06E-41 |
| LYAM2_HUMAN | 29.602 % | 158 | 2.3E-40 |
| CSMD1_HUMAN | 23.994 % | 137 | 2.13E-32 |