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TRANSCRIPT CARD

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  1. Transcript 'Boschl.CG.Botznik201...' > 
  2. Region 'REG00000305' > 
  3. Molecular Tool 'EpiB::NeuroD-like' > 
  4. Transcript 'Harore.CG.MTP2014.S8...' > 
  5. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S18.g12175.01.t

Possible name(s)

VPS25

Gene model

Harore.CG.MTP2014.S18.g12175

Location

S18 [531,589 / 536,132]

Sequences

Amino acid sequence

Length: 175

>Harore.CG.MTP2014.S18.g12175.01.p
MSTSGFKWPWQYNFPPFFTLQPNADTRSKQLDGWCELVVGYHQHRNRSTLRIADISSTDL
FYNQTLNRKLNQEAIMEVLNTLYKKGNLEWTDKTKTSCTILWKTPEQWADLIYAWIFKTG
MVNTVCTLFELNHGDDTKGQEFHGLEEDMFLRALRILEKRRKAEMIGEDGVKFFM

Nucleotide sequence

Length: 3,621

>Harore.CG.MTP2014.S18.g12175.01.t
ATTCTTGCAGAGAAAATATAAAGGGGATTGATGCTGGTGACAGTGAATCTGATGATGATA
TGGCAGTCGCTGAAATTCAACCAAGTAAATTTTTAAACTTCACTACTTCGAATCCAGCTA
AATTCAAGTTATCTATACTGTATTTATAATATGCATGTGACTTTATTATAATATACTTAG
TTAGAAAAAGCGGGGTGTAAGACCTCTCAAAACAATGCCACAGTTTTCTGATAATTTCTT
TCATGTCTATTTGTTGTGTATTCAGGTTCTGTGTATCAATCTGATGCTGACAACACTCCT
AATTCTGGGGTTTTGCCTAGCCTCGGTTTATGGGAGCAACATACTAAAGGAATAGGATCA
CAATTGATGCAAAAAATGGGTTATCAGTTAGGGCAGGGATTAGGGAAATCGAAACAAGGG
AGACTGGAACCTGTGCCGATAATTCTTCTGCCACCGCGGATGTCACTGGATGCGTGCATG
CAACTTAAACTGAAAAAGGGAGTCAGGAGTATTAATGTGAATAAATATAAATTCTTTTTT
CAATACAGTTGCTTCCTTCTATACAAGAAGATTGAATTACAGCATGTCAATTTTTATCTA
TAGGACACCAATGCAAAAAATGCAAAGCCATCAAGAATAAAGATGGTGAAAAATTGTAGG
CGGAAAAGACCAAATTGTGTTTTCGGTTTTCTTAACAAAACTTTAGGGGATAAAATGGCC
AAGAAATCAATCACTAAAGACTCTGCTTCCTGTCCAAAAGATATGTTTGGAGCTAAAGAG
GGTAAGGAGCAGAAGAACACAAGAAAAATGAACAAAGAACTATTCAAAAATGAAGAAGAA
ATGAAGAAAATTAAAATCAAAGTAAAAAAATTGAAAGTTTCCATCAGGAGAAATGAAGAA
AGAAATCCCTTAGTAGCAAAATCATTACGGGATAAGCTTAAAGAAATGTTATTGACATTG
GATGGAATGAAAGAGTATGACTCAAAGATGAAAATGAATCAAAAAAGAATGGAAACTCAC
AGAACAATGACAATGTTTTAAATCGTATATCTTTCTATAATGCTTTCGGATCAATTTAGA
TTTTCTGCAAATTATAATAAATCATAGAAAGTTAGAACACAAGACTGTTTCGTACTGCTT
AGCACTTCACTAGGGACTTACTGATACCAGTAGGAAATTCGTGTGAGATCAAGGTCAGTT
TCACGCAAACCTTCAGCTACGCTTAACGACATTCTGCAGGGAATGGAAATATGTAATTTT
CACGTGGCTCAGCTCCTGCCGCTTAGGTAAAATGAATTAAACTGAACTTCGCATGTCGCT
GAATAATATTGAATTTATGCGGTTCAATCGACGACCCCGTGTCAAAGGTTAAACACATCG
AGTTGCGATATTATCGGAAACTACCTTGATATTTTTCTAAATTTTCCCGGTATTCTTTCA
CCGCTATTTAAAAATATGTTAGGGTCTCATTTACGACAGTTAACGAGAATATCGAATTTC
GATATCACAAGAAAAGTAGATGCATTGTGGAGACGCCGAATGTCAAAAGAAGTCTGCACA
AGAAAGGTTTTTGAACCAGCTTTCGGAGAAACCGAAACGAGCACTGTTAAGGAAGAAAAG
GTGACTTTTAAAAGAAAAACACCCGAGGAAATATTTGAACAAATAAAAGACGAACGAAAA
GTGAGAAAGCTGACACTGTTTGACAAAGTTCTATTGGTATTTCTGGGTAAATACAAACGA
ATACAGGATGTTCCCAATGAAATCACATTCATGCCTGGCGAGTTAAATAAACTCGAAATG
TCCAATGTGAGGGACGAAGCATTGGAGAAAGGTTTCAAAGCAGTTAAAATGTTTGAATTG
ACCTCCTTTTTTCTGACATTTGGGATTTTAATATTTGCTGTCTCCCTGTATGCATCACAC
AGTAAAAAGCAGTCTACTGAAAAGGAAAAGGCTAACTTGGAATCAGAAACAAAACATTAA
AAAAGGGTGTTCATGTTTTCTTATAGCATTATGGATTAGCATCATCATTTTTACAGGTAT
TCTGATAAATATTATATAATGAGAGAATTAGATACAATACATTCCCAGTTAAGCTGTGAA
AGTTCAGAATTTCATGGCTGAATCTGACCTATAAATCTAATCTTGGACTATGGGGTACAG
AAATCACCCAGAATTTTCGATATTATTGTACTCATGTGCAATAACAGCCGACTCCATATA
TGAATACTGAAGGACACTTATCATGGATTGCAAAACATAAGTGATAGTGATACAATAGAT
TGCTTGTGCAACATTTGGGAAAATTATCATATATGTCTGCTGTTATTTTGAAAATCTGGT
GGATGTAAGAAGAATTATGCCTGGTCTTATCCATCCATATGTTTGGTTTACTATTTATTA
GTGCAAGCTATATTTTTTCATTACACACATCTGAAACAATAGTCTAAATTTTGAATCCAT
TTATTGTTTGATATTACATACGAATTGTTATTTATATATGGTATTTATATTGGTATACGT
TTGGTTATAGCATTACAGAACAAATTAGGTTAAAATCAGAGAGTATAAAGGTTCAGTATG
TCAACATCTGGTTTCAAATGGCCTTGGCAGTACAATTTTCCACCCTTCTTCACATTACAA
CCAAATGCAGACACAAGATCTAAGCAACTCGATGGTTGGTGCGAACTCGTAGTCGGTTAT
CATCAACATCGCAACCGTTCTACGCTTCGAATCGCAGACATAAGTTCAACCGATTTGTTC
TACAACCAAACCCTGAACAGAAAGTTAAATCAAGAAGCTATTATGGAAGTTTTAAACACA
CTGTATAAAAAGGGAAATCTTGAATGGACAGACAAAACTAAAACCTCTTGTACGATACTA
TGGAAAACACCTGAGCAATGGGCAGATCTCATATATGCATGGATTTTTAAGACTGGAATG
GTCAACACTGTATGCACCTTGTTTGAATTGAACCACGGAGATGACACGAAGGGTCAAGAA
TTTCACGGACTTGAAGAAGATATGTTTTTGCGAGCTTTACGAATCCTGGAAAAGAGAAGG
AAGGCAGAAATGATCGGTGAAGATGGTGTCAAGTTTTTCATGTAGAATCTAAATGCTTTG
GATTGCCTTACATTAACGCAATACAGGTTAAATCTCACTAATCTGGCAAGCATGGTACTA
GGACAACAGATGATGCGATTTCTAAAGCAGTGAAGCTTAGGGTTCAAAATGACTAATAAT
GTATAGGCTGTTCTGTAATACTGATAACGATAAAACTTACATAAGCACAGATTTACTAGT
CGTCTGTACGAGAAACTACTCAGAATCTCAGATTAGTGAGGTTTAAGCTGCACGTTTAAG
TCCTTTGTTGAACGGAAATGATGCATCGTCCTGAATCCCTCTCGGAAGAGCGAGCTGCCT
TGTCGTTTTTTCGCAATGGTCAAATCTCAAAACTGCAGGGGGCGCCAGAGAGTCATTTGT
ATTCCACATTCACCCGCAGCTGTACATATTATTCTTTACGTGAATCTATGCTACTGTGTG
GTTGTTCTTGGAATAAAATATATCATAATACACTCACTTCTAGTTCCTTAAGCACTACTT
AAAACAAAGACGAAACGTGGA

InterProScan

PANTHER
ESCRT-II_cplx_Vps25-sub (IPR008570) - T[1-174] 1.4E-66
Gene3D
ESCRT-II_cplx_Vps25-sub_N (IPR014041) - T[2-100] 2.1E-35
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[6-108] 3.13E-31 - T[103-170] 1.58E-20
Pfam
ESCRT-II_cplx_Vps25-sub (IPR008570) - T[11-146] 1.4E-52
Gene3D
WH-like_DNA-bd_sf (IPR036388) - T[101-174] 2.6E-29

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VPS25_HUMAN 51.445 % 190 2.56E-62