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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S3...' > 
  2. Molecular Tool 'dnFGFR mRNA (Davidson 2006)' > 
  3. Clone 'ma323k17' > 
  4. Transcript 'Boschl.CG.Botznik201...' > 
  5. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S190.g13254.01.t

Possible name(s)

KHDRBS1; KHDRBS2; KHDRBS3

Gene model

Harore.CG.MTP2014.S190.g13254

Location

S190 [152,080 / 156,455]

Sequences

Amino acid sequence

Length: 306

>Harore.CG.MTP2014.S190.g13254.01.p
MANDSKYLPELMAEKDSIDPSFVHAVRLICEEIKRIEIPEKKEEPQKKGEKVFQDVTSQK
FSKVSCDIRIPAEDHPSINFVGRLIGPKGSTMKAIQELTNTRIAVLGKGSVRDRDRKKVD
DDNRHDEKLNHLQYPLHVHVSSMAPLPQAYVNLGRACAEIQKLLQVDEDTEAQFAAAQGM
LPGANRGFRAGVRGGRGMNRGRGRGGFAQRGAGSGGASGTQRGTIRGGGRGMRGGGRGNQ
SYMQMAAAAAAAEAYTEDYSYDSFSGAGAYDTSGYDDSYATGFDTSYAAEAAAYADGYYW
IWKRLL

Nucleotide sequence

Length: 2,079

>Harore.CG.MTP2014.S190.g13254.01.t
GACAGCGGTAGTTCACGTGCCCTCTCTCCATTTTTTTATTTCAGTTTAGCTTGTTCAAAA
AAAAGGAAGCGTTAACCTGTATGACATTGAAAGCTAGAAGATCACATTTACTTGGGAAAT
TACAGGAAGCTTTACGCAATTGCTAAGAAAGTATCATGGCTAACGATAGCAAATATCTTC
CTGAATTGATGGCAGAGAAGGACAGTATCGACCCGTCCTTCGTCCATGCTGTGCGACTTA
TATGTGAAGAAATCAAAAGAATTGAAATTCCGGAAAAGAAAGAAGAACCTCAAAAGAAAG
GGGAAAAAGTATTCCAAGACGTAACGTCACAGAAATTTTCCAAAGTTTCGTGCGATATTA
GAATACCAGCGGAAGACCATCCATCGATAAATTTTGTTGGTCGTTTGATCGGTCCCAAAG
GATCAACAATGAAAGCTATTCAAGAATTAACAAACACAAGAATAGCTGTTCTCGGCAAAG
GATCTGTACGAGATAGGGATCGTAAGAAGGTGGACGATGATAATCGACATGACGAAAAAC
TCAACCATCTACAGTATCCACTCCATGTACATGTCAGTTCCATGGCACCTCTTCCACAGG
CCTATGTAAATTTAGGGAGGGCCTGTGCTGAAATTCAGAAACTTCTTCAAGTTGATGAGG
ACACGGAAGCTCAGTTTGCTGCTGCCCAGGGAATGCTTCCAGGCGCAAACAGAGGTTTTC
GAGCCGGTGTCCGTGGTGGGCGTGGAATGAATCGAGGACGTGGCAGAGGTGGATTCGCAC
AGAGGGGTGCTGGATCGGGTGGAGCTAGTGGTACTCAACGTGGAACAATCAGAGGTGGCG
GTCGTGGCATGAGAGGTGGTGGTCGCGGAAACCAATCTTACATGCAAATGGCTGCAGCAG
CAGCCGCAGCTGAGGCATACACTGAGGACTATAGTTACGATTCCTTTAGTGGTGCCGGTG
CCTATGATACGTCAGGCTATGATGATTCCTACGCAACTGGTTTCGATACATCTTATGCTG
CTGAAGCAGCTGCATATGCAGATGGGTATTATTGGATTTGGAAACGACTCTTATGATTAT
GGAAATGGCTCCGCTGCATCTCAGACAGGTTCATTCTCCAGTCAAGGATCTTTTCGCGGA
AAGTTGTCCGGAGGTCGTGGTGGCATGCGAGGTCGTCAAAAGCCCTACTAAATATGCCGG
CATATTGTGACGCTGGGGCTAAAGCCTCCCTGGTTAGTTTTGAAATAGACGAGACCTATT
TCACCACAGCTACAAAACAATCAAAAATATATCACAGCTGCGACAAAAGTGCGATCAAAA
CTTGAAATGGCAAAGCTTTTACACAAATCGAATATAACATAATTTTGCAGAAAAAAAAAA
CTGACAAAATGTGAAAGATTGAGCGGTGTACGTAACCAAAAATGTAGATTTGAGAGCTCG
CTCTTGTGAAGGATTATTCATCAGTTTCATCAAGTACTTTATATAGATTCAACCTGAAAC
TTTTGAAAGGTCTAATAATCTTTACTTGACCAATAAACTAAACTTTTGTATTTCTTTATT
TTAACAGTGAAATGGTATTTTTGCATGCAGAACAGTTACCAATGAACTTCTTTCGTTCTA
GAGGTCTCGGTCATTTAATGTACGGATCCGTACAATATTAAACCAGCTTCGTAATGTTTT
ATGTGTCGTCAGTCTTTAAACTGTAAATATGAAAATAAACACATGTACGAATTATTGCTA
ATACTCCTTTTATGAAGATTCAATCTACCCATTAATTACTTTTAATTGGAAAAGCAAAAG
CGTTTCAAAGTCTATAATGCAGGAGACATAATAAAAAGTAAACGCGACGGCAAAAGAATT
CATCGACAACTTAAAGAAAAAATAACGTCAACTCAATTAAAAATAGCTGAGGTAAAGTAT
TAAACATTTCTAAACTCTATACAATATGTTGAAATTAACTTAAAATCATTTTTTTCTGAA
GGAAAATCATTAACAGGTTGTTAAAAAGTTTATATACTCCTAAGTAAAAATAGAAAATTA
ACAAATAATTATTCATTATCACTGACCGTATCATCAAAA

InterProScan

Gene3D
KH_dom_type_1_sf (IPR036612) - T[1-182] 2.5E-40
Pfam
Qua1_dom (IPR032571) - T[6-60] 1.8E-17
SMART
KH_dom (IPR004087) - T[62-165] 6.1E-7
SUPERFAMILY
KH_dom_type_1_sf (IPR036612) - T[65-170] 3.2E-20
Pfam
KH_dom_type_1 (IPR004088) - T[79-111] 3.0E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
KHDR3_HUMAN 35.032 % 152 1.22E-43
KHDR1_HUMAN 38.66 % 132 1.54E-35
KHDR2_HUMAN 43.787 % 137 4.54E-38