- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S198.g08895.01.t
Possible name(s)
PCDH18; PCDH19; PCDHA4
Gene model
Location
S198 [4,722 / 14,508]
Amino acid sequence
Length: 1,425
>Harore.CG.MTP2014.S198.g08895.01.p
SNSYFELQSLLQTAVGRLRYYQRQFTTICLKLLVVLLHKIKPKANRKKLGEGGKVSSKSC
SVTRQKMFTFEITREKPENRSTRCSALARYFKDHVPLITDGCNTTIRPKNSPDYYASTLP
FLIFTSVCFGYIGSFVRNTMLTSKGILFYYHFILKHVFNGECFTTRSTGQYLDSCEPSYT
KFNVKSVRQQKALMSGPLLFRVGLSPVYHLSLTTLQKDFLYLCIIFILGYEFIITNLIIF
NYSIVFIEIINFPRHHYLSSISVGNMDILWRFLFLYLCVINFSACFSSSVKSTVHVNEET
KDGTTRAIIADVADLTSAKLLPNIRPRMNRKFRIISQKLKSSSSLDVSHKSSENKAIRWL
KIDERTGLVKIMRHVDRDVVCAGKEECVIRAEIVLLPQEIFTLVELDVVIDDVNDNAPEF
PIKFVTFNLSESRSVSEMINLDPYKATDLDSGRNSLIHYSLSNNSYFALKQFNDENGQSH
VQLYLLRHLDHEAIPEVSMTVTATDSGVPPLTDVMAIKAVIADVNDNYPIFEQQEYIVTL
KENFAPGNVIATVKANDLDSGAFGDVKYSIPARSGNIARGLVSIDEDRGIITLIESVDRE
SHHGLRILVEAHDSDPNNRKSAETWLVIYVEDVNDNSPVINVDFVLESSENTVFITESSP
IGTFLAKVSATDADAGRNGDVNVRITSKELNQGKRAKSSAENQSRNLFTVNDYGFIESRI
ELDRELCNQYRMIITACDLGESSRCSTKLVLISVIDVNEFAPKFEMLNQRINLREDASVS
TDVTTVSATDGDSVNGQALTKNEDDNIVPSKNGQVYYSIVSGSGGVFTVDKRSGLIHGGE
PPKESKSEVTVLVDDVNDNSPRFTNPGFNNSVVYANIKSNKLVTKIQAVDYDSGFNAKIR
YYLESDNGVKSDERRSIKKSRLVKSNKQIAGPFFILNPLSGVLRVNFSHGNLSEGLGLHN
LVIRAQDSGTPPLSTKTTLRVVVTKGVIPRTGGRNDFSGSTDFLILAVALGCATIFLMFL
IIAVALKCRKMNKEIRTYSAPKKSDPENSEKFEESIEKQSNRDENMSLKKSQSFSEKASN
SNRSTPASSPTKSEDNGQIASALYQCDPAKKRLDIPSSSHSDGDSGRGDSEADIVSCNVT
DAQGKRLIDNRLFSDIHQRRELGNTLGPHCNDKCRIYGHSDTCWMPVQSSYEMQPRKALP
HYDWNKMKLRYHYPERSRHSLAVADNMMHRARCSDSNLLPYNTSYVLASSNHAAMRHVNS
ACHMPEFQRLPLHLQRPRSTTPTTNFKGNNAHLYSGRESGNVELPIARSSQNTLCEFESC
LLLGGSTGYSANFVGCGTGLDTLYETDSTGNNLPAPTTVKCLDHKTSEISSHESRNIDSN
LSHTPPPSGSPSSSGSFDNNVPISQGLISMQETRQIIDDIESLLV
Nucleotide sequence
Length: 4,322
>Harore.CG.MTP2014.S198.g08895.01.t
AGTCAAATTCGTATTTTGAACTCCAATCATTATTGCAAACTGCTGTTGGTCGACTCAGAT
ACTACCAAAGACAGTTTACTACTATCTGCTTGAAACTTTTGGTGGTTCTTTTGCATAAGA
TAAAACCGAAGGCCAATCGGAAAAAGTTGGGGGAAGGAGGTAAAGTCTCTTCGAAAAGTT
GCAGCGTCACAAGGCAAAAGATGTTTACTTTTGAAATCACGAGAGAAAAACCGGAAAACA
GGTCTACACGGTGCTCTGCACTCGCTCGCTATTTCAAAGATCATGTACCGCTCATTACGG
ATGGGTGCAATACAACTATTAGGCCGAAGAATTCACCAGACTACTACGCTTCAACCCTCC
CTTTCTTAATTTTCACCAGCGTCTGTTTTGGCTATATCGGTTCCTTTGTAAGGAATACCA
TGTTAACTTCAAAGGGAATCCTATTTTACTACCATTTCATACTCAAGCATGTCTTTAATG
GCGAGTGTTTTACGACCAGGTCTACAGGGCAATATTTAGATTCCTGCGAACCTTCGTACA
CGAAATTTAATGTCAAAAGTGTAAGACAACAAAAAGCTTTAATGTCAGGTCCATTACTGT
TTCGAGTCGGGTTGTCCCCCGTCTACCACCTGTCGCTGACAACACTACAAAAAGATTTTC
TTTACCTATGTATCATTTTCATACTGGGATATGAATTTATCATCACAAATTTAATCATCT
TCAATTACTCAATAGTTTTTATTGAAATTATTAATTTTCCGCGTCATCACTACCTTTCAT
CTATTTCAGTTGGAAACATGGATATATTATGGAGGTTTCTTTTCCTCTACTTGTGTGTCA
TCAACTTTTCTGCCTGTTTTTCGTCGAGTGTCAAATCGACCGTCCACGTCAACGAGGAAA
CCAAAGACGGTACTACCAGAGCCATCATTGCTGACGTTGCCGATCTTACTTCAGCGAAAT
TGTTGCCCAATATTCGCCCAAGAATGAATAGAAAGTTCCGGATTATAAGTCAAAAATTGA
AAAGTTCCAGCTCTCTGGATGTATCCCATAAAAGTTCAGAAAACAAAGCAATACGATGGT
TGAAAATAGACGAAAGAACGGGGCTTGTCAAAATCATGCGACACGTCGATAGAGATGTGG
TATGTGCTGGAAAAGAGGAATGCGTCATCCGTGCAGAGATTGTCTTACTGCCTCAAGAAA
TTTTCACCCTCGTCGAACTGGACGTTGTCATAGACGACGTGAATGACAACGCTCCGGAAT
TTCCGATAAAATTTGTCACTTTCAACTTATCCGAAAGTCGTTCCGTCAGTGAGATGATAA
ATCTGGATCCGTACAAAGCCACTGATTTGGATTCAGGAAGGAACTCATTGATTCACTACA
GTCTGTCAAACAATTCTTATTTTGCATTGAAACAATTCAACGACGAAAACGGCCAGTCAC
ATGTTCAGCTGTATTTGCTTAGGCATCTTGACCATGAGGCCATACCGGAGGTCAGTATGA
CCGTTACGGCAACAGATAGCGGAGTACCACCGCTGACAGACGTCATGGCGATCAAGGCAG
TAATTGCAGATGTCAACGATAATTATCCAATTTTTGAACAACAGGAATACATTGTCACGC
TGAAAGAAAACTTTGCTCCCGGTAACGTGATCGCTACTGTAAAAGCAAACGACTTGGACA
GCGGAGCTTTCGGCGATGTAAAGTATTCAATTCCGGCTAGAAGCGGAAATATCGCCCGAG
GTCTCGTATCTATTGACGAAGATCGGGGTATTATCACGTTGATTGAATCAGTCGATAGAG
AAAGCCATCATGGTCTCCGTATCCTTGTGGAGGCTCACGATTCTGATCCGAACAATCGAA
AGTCGGCCGAGACGTGGTTAGTGATTTACGTAGAAGACGTAAACGACAATTCGCCAGTAA
TAAATGTGGATTTCGTACTGGAATCGTCAGAAAATACAGTTTTCATCACGGAGTCGTCAC
CGATCGGAACCTTTCTCGCTAAAGTATCAGCCACTGATGCTGACGCTGGAAGAAACGGAG
ATGTCAATGTTCGAATTACATCCAAAGAACTGAACCAAGGGAAGAGAGCAAAATCATCCG
CTGAAAATCAATCTCGGAATCTGTTCACAGTGAATGATTATGGATTCATTGAAAGCAGGA
TAGAGCTTGATCGGGAGCTTTGTAATCAGTACAGAATGATTATAACAGCCTGTGACCTTG
GAGAATCATCAAGATGCTCAACCAAACTAGTTTTAATATCTGTTATTGACGTAAACGAAT
TTGCTCCTAAATTTGAGATGCTGAATCAGAGAATAAATTTACGTGAGGACGCCTCTGTCA
GCACAGACGTTACTACTGTGTCAGCCACCGACGGAGATAGCGTTAATGGACAAGCCTTGA
CAAAAAATGAGGATGACAATATCGTACCATCGAAGAATGGACAAGTTTACTACTCCATTG
TTAGCGGTAGTGGCGGTGTTTTCACAGTCGACAAAAGGTCTGGTTTAATCCATGGAGGTG
AACCTCCAAAGGAAAGCAAGAGTGAAGTAACCGTTTTGGTAGATGATGTCAACGATAACT
CACCACGTTTTACAAACCCAGGCTTCAATAACTCTGTAGTTTACGCCAACATAAAGTCTA
ATAAACTTGTCACTAAAATACAGGCTGTGGATTACGATTCCGGTTTTAACGCAAAAATAC
GATACTACTTGGAATCGGACAACGGCGTAAAGAGTGACGAACGGCGCAGCATAAAAAAAT
CCAGGCTCGTGAAATCCAATAAGCAAATTGCCGGCCCATTTTTTATTCTCAATCCACTTT
CCGGTGTTCTACGTGTGAATTTTAGCCATGGTAACCTTTCCGAAGGGCTCGGACTCCATA
ACTTAGTTATTCGGGCACAGGATTCAGGAACTCCTCCACTGAGCACTAAAACCACTCTTC
GAGTAGTGGTTACCAAGGGTGTGATTCCAAGAACTGGAGGAAGAAACGATTTTTCCGGGT
CGACTGATTTTCTCATCCTAGCAGTTGCTCTAGGATGCGCAACAATCTTTCTCATGTTCC
TTATCATAGCTGTTGCTCTCAAATGCAGAAAAATGAATAAGGAAATAAGGACATACAGCG
CTCCTAAGAAAAGTGATCCAGAAAATAGTGAAAAGTTTGAAGAAAGTATTGAAAAGCAAA
GTAACCGTGATGAAAATATGTCGCTGAAAAAATCTCAAAGTTTTTCAGAAAAAGCAAGTA
ACAGTAACAGATCCACCCCAGCTTCATCGCCGACAAAATCAGAAGACAACGGTCAAATTG
CCTCAGCTTTATATCAATGCGATCCTGCCAAAAAGAGGCTAGATATTCCAAGTTCTTCTC
ATTCGGATGGCGACAGTGGAAGAGGGGACAGTGAAGCAGACATTGTTAGTTGCAACGTGA
CAGATGCTCAAGGTAAACGGCTAATTGATAACCGTTTATTTTCAGATATCCATCAAAGAA
GGGAACTCGGTAACACACTGGGCCCACACTGCAACGATAAATGCAGAATATATGGCCACA
GCGACACCTGTTGGATGCCAGTGCAATCATCATATGAAATGCAACCACGAAAAGCTTTGC
CTCACTACGACTGGAATAAAATGAAACTAAGATATCATTATCCGGAAAGATCACGTCACT
CCCTGGCAGTTGCAGACAACATGATGCATCGAGCCAGATGTAGCGATTCTAATTTGCTTC
CTTACAATACGAGTTACGTGTTAGCTTCCTCAAACCATGCAGCCATGCGTCACGTTAACA
GTGCTTGTCATATGCCTGAATTTCAAAGACTTCCACTACATTTACAAAGACCCAGATCCA
CTACTCCAACTACAAACTTTAAGGGTAACAATGCTCATCTGTATTCTGGCCGAGAAAGCG
GAAATGTTGAATTACCGATTGCAAGATCTTCTCAAAATACTCTTTGTGAATTTGAATCTT
GCTTGTTGCTAGGCGGCTCTACTGGTTATTCCGCAAACTTTGTAGGATGCGGGACAGGTC
TGGACACGTTGTACGAAACTGATTCTACCGGAAACAACCTCCCTGCTCCAACAACAGTCA
AATGTTTGGATCACAAAACATCAGAAATCAGTTCCCACGAAAGTCGAAATATTGATTCCA
ATCTTTCTCATACTCCCCCACCTTCCGGGAGTCCAAGTTCTTCCGGAAGTTTTGATAACA
ATGTTCCAATAAGCCAAGGACTTATTTCAATGCAAGAAACGCGGCAAATTATTGATGATA
TTGAAAGTTTACTTGTATAATCATTATCAACTTGAATTTATAATTTAATAAATATCGCGA
AC
| SMART |
Cadherin (IPR002126) - T[308-418] 0.2 - T[444-529] 4.3E-20 - T[553-638] 4.7E-18 - T[668-762] 7.8E-18 - T[801-861] 0.11 - T[886-991] 2.7E-6 |
| PRINTS |
Cadherin (IPR002126) - T[358-377] 4.9E-20 - T[496-508] 4.9E-20 - T[510-529] 4.9E-20 - T[529-542] 4.9E-20 - T[587-613] 4.9E-20 - T[845-862] 4.9E-20 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[414-531] 8.28E-18 - T[521-644] 1.71E-25 - T[633-757] 6.14E-17 - T[758-855] 1.27E-7 - T[856-984] 1.24E-15 |
| Pfam |
Cadherin (IPR002126) - T[444-518] 2.9E-7 - T[537-630] 1.6E-8 - T[653-754] 1.6E-9 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[628-638] . - T[851-861] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 28.765 % | 265 | 1.71E-72 |
| PCD19_HUMAN | 29.15 % | 256 | 1.01E-69 |
| PCDA4_HUMAN | 28.854 % | 236 | 3.88E-64 |