- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S198.g11504.01.t
Possible name(s)
PCDH18; PCDHB13; PCDHB3
Gene model
Location
S198 [63,329 / 72,651]
Amino acid sequence
Length: 1,190
>Harore.CG.MTP2014.S198.g11504.01.p
MKQSRCLQITFLIFASVLVTFCQSSSIIDHKITLQEEKKKGSEVINAADILDDNPELVPG
RYFKLLSQKIVLDKGNNKKIAGNEAWLVVDRETGVINWNRKFDRERECAGSDVCTLKVQT
VMMPQSIFSLLNLEIEIEDINDNAPVFRKNNSPLNASENFQPETSINMDQYKANDYDQGV
NAVVDYVLGKTKYFRLKVTRDEAGRTHLNLILKHKLDHENIQEHTLTLTATDRGTPSQST
QIPVKINVIDENDNGPIFLKDEYEVTLLENFQSGNVISQVTAKDEDSGELGEITYFFPDS
EMSAPALWKEVVTLNNVTGEVQLLQNLDRERHDGLRIPIAARDGDLVHPRTGNTWLTIHV
RDVNDNVPVINVNFILDAEGDRAYILETSPVRTYLAYVITTDADKGNNGQVKTTIQTMKA
PGSIRTGSYNASGQFVLASEGLIGTGLPLDRESCNEYKIVITACDYGLPKKCSKKIITVV
VLDANEHAPTFEATTQMVTLREDSDVGTFVTSVRAHDEDALNGPALVRTESGELLPSHYG
DVTYSIVDNVNDVFSIDSNTGRISLVRKLDREDTEEWKLTVKAVDGGSPEPLSSSCFVII
QVDDVNDNAPLFVNPSVNNSHVYASITNHDVIIANIKAIDKDEKENGDIRYYLVERDGRN
GNGGKTYKPAAFTIDSKTGDFAFSTEVNLTDFIGEHTVAIEARDSGDPPMRSLITIRVFV
SDVPLKPMTPFTNGIDVVTAKSSDFLILALSLGSAIVFLLLVVIIVVLRCKRENKRARTY
RCREAENKTTSCVACSCEGSHDDVRSNLTSPSSASSHPETTTTIADSSKVGKTWNPPNSR
TESDSVLSGSGGSSTSNGSHLTTSDASARDRTRYQSSPNPSCVLPLGTKLCSPISKLGAA
SLSSHPDSDSGRGESETDAVSYDMHDAIESGVRAMKRSPLTMGSDEVFQREYEQRSLPYG
LGPRCTRQCLKDGHSDICWMPSPEKKTAGKRNLSSIAGRTLPSTLGYSCQANQYQPKPCS
RLESIRETLPAQERLSTRQFHRRNPYTKPSSCSDIPYDDERRENLSTRTRGAISSVCHHH
HSSSDVYEPNFVGSSRSPSSERLSQVSSSCSAPERSLTAQEKPYNLNMNRLTSKYQDYLE
VPQSNYYSRISPTSERSDRYDDNTVPTCTDSLMTANEAQEIINDINRLLV
Nucleotide sequence
Length: 4,206
>Harore.CG.MTP2014.S198.g11504.01.t
AGATTGTAATTTAAAAAATAAGTAATTGAATAATATACATCAATATTCCTAAAACGCATC
TTTGGATTAGCTGAATACTGAGCAAGCGAAGGAGAATAATTGTATTTGAAAGTTAACGGA
GAAGAACAAAGAAATATCTGAAGACAAATTAGCAGAAAATCGAAATAATGAAGCAGTCCA
GGTGTCTGCAAATTACATTCTTAATTTTTGCCTCTGTCCTCGTGACCTTTTGCCAATCGT
CATCCATAATTGATCACAAAATCACATTGCAGGAGGAAAAAAAGAAAGGTTCTGAGGTCA
TTAACGCTGCCGATATACTTGATGATAATCCAGAACTCGTTCCTGGAAGATATTTCAAAC
TTCTGAGTCAAAAAATCGTCTTGGATAAAGGGAATAATAAAAAAATTGCTGGGAATGAAG
CGTGGTTGGTCGTTGATCGCGAAACAGGAGTCATAAATTGGAATCGTAAATTTGATAGAG
AGCGAGAATGTGCCGGGAGCGACGTTTGTACACTTAAAGTTCAGACTGTTATGATGCCTC
AAAGCATTTTTTCCTTGCTGAACCTGGAAATTGAAATCGAAGATATCAACGACAATGCAC
CAGTTTTTAGAAAAAACAATTCTCCACTTAACGCAAGTGAAAACTTCCAACCGGAAACTT
CTATAAACATGGATCAATATAAAGCAAACGATTATGATCAAGGTGTCAACGCTGTTGTCG
ACTACGTTCTGGGAAAGACCAAATATTTTCGTTTGAAAGTAACCAGAGACGAAGCAGGCA
GGACTCATTTGAATCTGATTCTCAAACATAAATTGGATCACGAAAATATTCAAGAACATA
CTTTAACACTGACTGCAACCGACAGAGGAACTCCGTCTCAATCAACCCAAATTCCCGTCA
AAATCAATGTTATTGATGAAAACGACAATGGACCAATATTTCTCAAAGACGAATACGAAG
TTACGCTACTGGAAAATTTCCAATCTGGCAATGTGATTTCTCAAGTTACTGCTAAAGACG
AGGACAGTGGCGAGTTGGGTGAAATAACCTATTTCTTTCCAGACAGCGAAATGTCCGCAC
CTGCCCTGTGGAAGGAAGTCGTCACTTTGAACAACGTAACGGGGGAAGTACAACTCCTTC
AGAACTTGGATAGAGAAAGGCACGATGGGCTCCGAATACCTATTGCAGCCCGCGATGGCG
ACCTCGTGCACCCGAGAACCGGCAATACATGGCTGACTATCCACGTCAGAGATGTAAACG
ACAACGTGCCCGTTATAAACGTAAATTTCATTCTAGATGCTGAAGGAGATAGAGCTTACA
TTCTTGAAACATCGCCCGTTCGCACCTACCTTGCCTATGTGATAACCACAGACGCTGACA
AGGGTAACAATGGTCAAGTTAAAACCACAATCCAAACCATGAAGGCACCTGGATCAATTA
GAACCGGATCTTACAATGCCAGTGGTCAGTTCGTTTTGGCCAGCGAAGGATTAATTGGCA
CCGGTCTGCCCTTGGATCGCGAGTCGTGCAACGAATATAAGATTGTTATCACAGCGTGTG
ACTATGGCTTGCCAAAAAAATGCTCGAAAAAAATCATCACAGTAGTTGTCCTCGATGCGA
ACGAACATGCACCAACATTTGAGGCGACGACCCAAATGGTAACATTACGTGAGGACAGTG
ACGTAGGTACATTTGTGACGTCAGTGAGAGCGCATGACGAAGATGCGTTGAATGGACCTG
CCCTGGTCCGAACAGAAAGCGGAGAACTGCTACCATCACACTATGGGGACGTCACCTATT
CCATAGTTGACAATGTCAATGACGTGTTTTCCATTGATTCCAACACTGGAAGAATATCAC
TTGTACGAAAACTTGACCGAGAAGATACAGAGGAATGGAAGCTTACAGTAAAAGCTGTTG
ATGGTGGCTCACCGGAACCTTTGAGCAGTAGCTGTTTCGTTATTATCCAAGTCGACGATG
TTAACGACAATGCTCCACTGTTTGTTAACCCGTCCGTTAATAACTCTCACGTGTATGCAA
GTATTACAAACCATGACGTGATTATCGCAAATATCAAGGCGATTGACAAGGATGAAAAAG
AGAACGGCGATATCCGGTATTATCTGGTCGAGAGAGATGGACGAAATGGAAACGGAGGCA
AGACCTATAAGCCTGCTGCATTCACTATTGATTCGAAAACCGGTGATTTTGCCTTCTCAA
CAGAAGTTAATCTAACTGATTTCATTGGAGAGCATACAGTGGCTATTGAGGCCCGTGATT
CAGGCGACCCACCGATGCGTAGTTTGATCACAATTCGTGTCTTCGTAAGTGACGTGCCAC
TCAAACCAATGACGCCATTCACCAACGGCATTGACGTAGTCACAGCGAAATCATCTGATT
TTCTTATCCTTGCCTTATCACTAGGATCTGCAATCGTCTTTTTACTTCTCGTTGTCATTA
TCGTCGTGCTTAGATGCAAACGAGAAAATAAGAGAGCTAGAACTTATAGATGTCGAGAAG
CAGAGAACAAGACTACCAGTTGTGTTGCCTGTAGTTGTGAAGGATCTCATGATGACGTCA
GAAGTAACCTGACTTCACCATCTTCAGCATCCTCTCATCCTGAGACGACAACGACCATAG
CAGATTCGTCAAAGGTTGGAAAAACTTGGAACCCACCAAATAGCAGAACTGAAAGCGACT
CTGTTCTCTCTGGATCTGGTGGATCGTCAACAAGCAACGGAAGCCATTTGACGACAAGTG
ACGCAAGTGCGCGAGATAGGACAAGATACCAAAGTTCACCCAATCCATCATGCGTTCTTC
CTCTTGGAACAAAATTGTGTTCGCCCATTTCCAAACTTGGAGCTGCTTCTTTGTCATCTC
ACCCAGACAGCGACAGTGGCAGAGGCGAAAGCGAGACTGACGCCGTTAGTTACGATATGC
ACGATGCAATTGAATCAGGAGTTAGAGCAATGAAACGTTCTCCACTCACGATGGGATCTG
ATGAAGTGTTTCAACGTGAATATGAACAAAGATCTTTGCCTTACGGCCTTGGACCACGAT
GCACAAGACAATGTCTGAAAGATGGCCACAGTGATATATGTTGGATGCCATCCCCAGAAA
AAAAAACAGCAGGAAAAAGAAATTTGAGTTCTATTGCCGGGAGAACCCTTCCATCGACAC
TTGGGTACTCATGCCAGGCAAACCAATATCAACCAAAACCATGCAGTAGGTTGGAATCAA
TTCGTGAAACATTACCAGCACAGGAACGTCTATCTACTAGACAGTTTCACCGTCGTAATC
CTTACACAAAGCCCAGTTCTTGTTCTGATATACCATACGATGACGAACGTCGCGAAAACT
TATCTACCCGCACAAGAGGCGCCATTTCATCCGTGTGTCATCACCATCACTCGTCGAGTG
ACGTCTACGAACCTAACTTCGTGGGTAGCTCTCGTTCGCCATCTAGCGAACGATTATCAC
AAGTCTCGTCGTCGTGTTCCGCTCCAGAGCGTTCCCTTACCGCCCAGGAAAAGCCTTACA
ATTTGAACATGAATCGATTGACAAGTAAATATCAGGATTATCTCGAGGTGCCGCAGTCGA
ATTATTACTCCAGGATATCGCCAACCTCGGAGCGTTCTGATCGGTACGACGATAACACGG
TTCCCACCTGTACAGACTCACTGATGACCGCTAACGAGGCCCAAGAAATAATTAATGACA
TAAATCGATTGCTTGTTTGATACTTTTGTCTACTTTTCCATTTGTATTTATTTTTTTCGT
TCGTTTGCCCTACAATTTTCTTGTCTGACAAAATTTATATATTTTTTCTTCTTTCTGTTT
CTAAATATAAAGTTAATATCTGAGTTCAAGGTTATTTATTTCTGACAGGTTGGCGCAGGC
CCACCAGTACGATATCGTAATATTTTTTCTGTGATCATTCGGTAATGTCAAATAACTTTT
GCAGTATCAACACTATACAGTAGTGAGTCAAATTACTGTTACTTTTTTGCAGTGATTCTG
ATCAACCCTCACATTCCAGATAAACCTTCATTCATTAGACTTTTTTTTAATATTTCCTAA
TAAATTATTTCTAATACTTTGAGAAGCAAGCCCATCCTTCTGATTAAATATTTAAGCAAT
TTCATAAAGCATTTCCTCTCATGATATTTGTAAATAGAAATCCAGTATCAATGATTAACA
TGAAAG
| SMART |
Cadherin (IPR002126) - T[67-145] 0.056 - T[171-256] 6.7E-17 - T[280-368] 2.5E-16 - T[398-489] 5.3E-13 - T[527-610] 8.8E-24 - T[636-728] 9.2E-9 |
| Pfam |
Cadherin_N (IPR013164) - T[81-122] 1.1E-4 |
| PRINTS |
Cadherin (IPR002126) - T[85-104] 2.7E-26 - T[258-287] 2.7E-26 - T[456-468] 2.7E-26 - T[470-489] 2.7E-26 - T[489-502] 2.7E-26 - T[559-585] 2.7E-26 - T[594-611] 2.7E-26 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[140-250] 3.4E-16 - T[246-374] 3.57E-22 - T[363-483] 8.64E-13 - T[479-617] 1.43E-24 - T[600-724] 3.27E-13 |
| Pfam |
Cadherin (IPR002126) - T[169-248] 5.0E-8 - T[263-360] 1.0E-9 - T[384-482] 7.9E-8 - T[498-602] 2.7E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[246-256] . - T[358-368] . - T[600-610] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 25.901 % | 294 | 4.91E-83 |
| PCDBD_HUMAN | 29.149 % | 269 | 2.26E-76 |
| PCDB3_HUMAN | 29.049 % | 275 | 2.45E-78 |