- Transcript 'KH2012:KH.S852.1.v2....' >
- Transcript 'KH2012:KH.C7.67.v1.C...' >
- Transcript 'Mooccu.CG.ELv1_2.S49...' >
- Transcript 'KH2012:KH.S852.1.v1....' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S19.g03041.01.t
Possible name(s)
COL12A1; MATN2; SELE
Gene model
Location
S19 [40,581 / 49,822]
Amino acid sequence
Length: 1,093
>Harore.CG.MTP2014.S19.g03041.01.p
MNHVVEMGQHLLNRTYCRPSSHNDAVNFRQCAPKTLLKAARSSVKLGAIRSSSLCRSCCD
KDRCNAKPFIEESVSAETNRGVHRYVSILPPTADVESTLLSESSALITFTDPSDTPGATY
YITLKPNAGVELNPIKPSVDSKLPGVHFNDTIPKNVIAYIATGLSGGVVYRVSIVKKVGF
QHFAQGEFDNFLTPPQPLQGMKAIKFEINSVLLDVGKPIFKVEDKYDSIRVSYRKTSDLI
QDEKLFPSFTRPGIIRLSDLQPSTEYIISAWTSIDKPNGSPKITSKRVNITVFTKVPRVN
EVELKNHHATNLTWEFKTSYERSQKNFVVTVRDDTDEIFVAENVIGGSRRFFTATKLIPE
HYYTFTIKAETDGHYSEVVRSPPVRTVSRCYGCLDASTREECMKIIECKPDDRGCLVELR
SRKVGYSRFSKKSFRATMTCKQVEACDKQEDQNLSHQCDPTARNQNSNPPEVCRCCCEGD
LCDGPGTDCGRLLGWLDPLKDVPVTTQTPVEMCEELVNLRDGFITCTEGGNLLGTTCTFS
CRAGTYLMGIGKTECLPGGTWSHRVPVCHAVKRCPAIESSYSSYVRCTAFNRPFSRCVAT
CRPGFVRVGSGVTLCRPNGLWTKAILNCVERDECVPNPCINDGKCKDRINSFKCICEPGY
YGEVCERKKVCEKLFKPKNGDLQCTNNNKFGSRCRYSCDVGYSMHGLKYTRCNQKGMWSS
TDLTICVVNKCDVKAQSLVNGGKMSCSGYAFGDTCTFSCPEGLKPAGGPNNITCLETSEW
SSEPPCCDLPCPPYAKVDLFFVLDSSSSVGKKSWKELIRFTVALLDYFVVGKRDMRVAVL
RYNNRVDTKNEIELGDYTSAQDLRQKLRSMPYNGHGTKTGKALDYFNKHSINVKGNRPGV
PDVVVVITDGLSSDNVKIPSQKLRAKGCKLYVVGVINKTDRVNIAQLQSIASGPKYLQII
DDGYQKLAEKLSQRLITDVCWMPCAHKYEMKELIDRHRQLAAMKIAQEDMEFWEQFDRKI
SRFSRNRIDTASSTIDANLVTEVENKMHELETPVEDEVPVEKTKGREAETELEFDDMSED
RKRQRANLRKNAN
Nucleotide sequence
Length: 3,999
>Harore.CG.MTP2014.S19.g03041.01.t
ATGAATCACGTGGTGGAAATGGGTCAACATTTGTTGAACAGGACTTACTGTCGTCCATCG
TCACACAATGACGCAGTCAATTTTCGCCAATGTGCTCCCAAGACGTTACTCAAGGCCGCA
CGTTCATCCGTTAAACTCGGAGCCATAAGGTCAAGCAGTTTATGTCGTTCATGCTGTGAC
AAAGACCGATGTAATGCAAAACCATTTATCGAGGAATCCGTCTCGGCAGAAACGAACAGG
GGTGTCCATAGATACGTGTCAATTTTACCACCTACTGCTGACGTTGAATCTACGCTGCTG
TCTGAAAGCTCGGCGCTTATCACTTTTACTGATCCCTCGGATACTCCGGGAGCTACGTAT
TACATAACTCTGAAACCTAATGCTGGAGTTGAACTCAATCCAATAAAGCCGAGTGTGGAC
AGCAAACTACCAGGGGTTCATTTCAACGACACCATACCTAAGAATGTGATTGCTTACATC
GCTACCGGCTTGTCTGGAGGAGTAGTTTATAGAGTGAGCATTGTTAAAAAAGTGGGATTC
CAACACTTCGCGCAAGGAGAATTTGATAATTTTCTCACACCACCCCAGCCTCTTCAAGGA
ATGAAAGCCATAAAGTTTGAGATCAACTCTGTTCTTCTCGACGTGGGCAAACCAATTTTC
AAAGTCGAAGACAAATACGATAGTATTCGTGTTAGTTACAGGAAAACTTCGGATCTCATT
CAAGACGAAAAATTATTCCCGTCATTCACACGTCCGGGCATCATTCGCCTATCAGACTTG
CAGCCTTCCACGGAATACATAATTTCCGCTTGGACAAGTATCGACAAGCCAAACGGCTCA
CCGAAGATAACTTCTAAACGAGTGAACATCACTGTTTTTACAAAGGTTCCACGGGTTAAC
GAGGTTGAGTTGAAAAATCACCACGCCACTAATCTCACTTGGGAATTTAAAACGTCGTAC
GAGAGATCGCAGAAAAATTTTGTTGTCACCGTACGCGACGACACCGACGAGATCTTCGTT
GCGGAGAATGTGATCGGAGGATCGAGGCGGTTTTTCACAGCGACCAAGCTGATTCCAGAG
CACTACTACACTTTCACAATAAAAGCAGAGACTGATGGACACTACTCTGAAGTAGTTCGC
TCCCCGCCTGTCCGTACCGTTTCCAGATGCTACGGTTGCCTGGACGCCTCCACCCGCGAA
GAATGTATGAAAATAATAGAGTGTAAGCCGGACGATCGCGGATGTTTGGTCGAGCTGCGG
TCTCGGAAAGTAGGTTACTCCAGATTTTCGAAAAAATCCTTCCGGGCTACGATGACATGC
AAGCAAGTGGAAGCTTGTGACAAGCAAGAAGATCAAAATTTATCCCATCAGTGCGACCCC
ACTGCTAGAAACCAAAATTCAAATCCACCCGAAGTATGTCGCTGTTGTTGCGAGGGGGAT
TTATGTGACGGACCAGGAACGGATTGCGGAAGATTGCTTGGCTGGTTGGACCCATTGAAG
GACGTTCCTGTCACGACACAAACCCCTGTGGAGATGTGTGAAGAATTGGTCAATCTTCGA
GATGGTTTTATAACTTGTACAGAGGGAGGGAATCTCTTGGGAACCACTTGTACATTTTCA
TGCCGAGCTGGCACTTACTTGATGGGAATAGGAAAAACAGAATGCTTACCAGGCGGAACT
TGGAGTCATCGGGTACCTGTATGCCACGCAGTCAAACGTTGCCCAGCCATCGAATCATCA
TACAGTTCCTATGTTAGATGTACTGCTTTCAATCGACCATTTTCTCGCTGTGTTGCCACC
TGCAGACCTGGATTCGTTCGAGTAGGCAGTGGTGTTACCCTATGTAGGCCCAACGGTTTG
TGGACGAAAGCAATCCTTAATTGCGTTGAGAGAGACGAATGCGTACCTAACCCATGTATT
AATGATGGCAAGTGTAAAGATCGTATCAACAGTTTCAAATGTATATGTGAGCCGGGTTAT
TATGGAGAAGTCTGCGAACGTAAGAAAGTTTGCGAAAAGCTTTTCAAGCCTAAAAATGGA
GACTTACAATGTACTAACAACAATAAGTTCGGTTCCCGGTGCCGCTATTCTTGTGATGTG
GGCTATTCCATGCACGGATTAAAATATACTCGTTGCAATCAAAAAGGAATGTGGTCGAGC
ACAGATCTGACCATTTGCGTTGTAAACAAATGCGATGTAAAGGCTCAAAGTCTGGTCAAC
GGAGGAAAAATGTCTTGCTCGGGTTACGCTTTCGGAGACACTTGCACGTTCTCTTGCCCG
GAGGGCTTGAAACCTGCCGGCGGTCCGAATAACATTACTTGCCTCGAGACCTCCGAGTGG
TCTAGCGAACCTCCCTGCTGTGACTTACCCTGCCCACCATACGCGAAAGTAGACCTATTT
TTTGTACTTGACTCGTCTTCATCCGTCGGAAAAAAGAGTTGGAAGGAACTAATTCGATTT
ACTGTGGCTCTCTTAGATTACTTCGTTGTAGGAAAACGGGACATGCGGGTAGCTGTACTA
AGGTATAACAATAGAGTTGATACAAAAAACGAGATAGAGTTGGGTGACTATACTAGCGCC
CAAGATTTAAGACAAAAGCTGCGGAGCATGCCCTATAACGGCCATGGAACGAAAACAGGT
AAAGCTCTCGACTACTTTAATAAACACAGCATTAACGTGAAAGGCAATCGACCAGGAGTA
CCAGACGTAGTGGTCGTCATCACGGACGGACTTTCGAGCGACAACGTCAAGATACCATCG
CAAAAACTCCGTGCTAAGGGATGCAAGTTGTACGTTGTTGGGGTGATCAATAAAACGGAT
AGGGTCAACATAGCTCAGCTCCAATCCATTGCCTCGGGACCAAAGTACTTACAAATCATT
GACGATGGCTACCAGAAACTAGCTGAAAAACTTTCTCAGAGACTGATTACTGACGTATGC
TGGATGCCATGCGCTCATAAATACGAAATGAAAGAACTGATTGATCGTCACAGACAACTG
GCCGCGATGAAAATCGCACAAGAAGATATGGAATTTTGGGAACAGTTCGACAGAAAGATA
TCCAGGTTCTCTAGAAACCGTATAGACACTGCTTCTTCGACGATAGACGCGAATTTGGTC
ACAGAAGTGGAAAACAAAATGCACGAATTAGAAACTCCTGTAGAAGATGAGGTACCTGTG
GAGAAGACGAAAGGAAGAGAAGCCGAAACAGAGCTGGAATTCGATGATATGTCTGAAGAC
AGAAAGAGGCAAAGGGCCAATCTGAGAAAGAACGCCAATTAAAGCTGGATGATGGATTGT
TTTGCTTGATGTTAGTATGATCTGTCTCACTTTCAGTGCTTGAGGTCTCAGTTCTTGCAA
TATCCTCTCACAAATCCGGATTCGAAGGAATATTGTTGGATTCCCTCTAATACTTGGAGA
CCATTCTTCGAATTTATCTTTGTTTCAGTCCGCCTATGCAAAGTCATCATAAATCCAGTT
CTAGAAGACAAGTTTGAATGCAGGCATTATTTTTGTATGACAGTAAATCATCGTTGTTGT
AATGAGATTAGCTCGGATACCTCCCCAGAAATAATATACATCACTGAACCAAAACGGGAA
ACATGTGGGAGGGCTAAACACCATAGAGATAAATAATACCTCGGTGTATAATACTATCAA
TCCTATTTATAATATTTTGTAATTACTTTTCCATTATTGTACTACCTTATCTCATTTTTT
GAATTTGTTTCGCATTTTCTGACGTTCCTCAGTTATTATTATTACTATTTATTATTCCTT
GTACATTCTATAGTGAGATAGATACCACTAGCTCTATTCAGCATTACATTCTTTCTACTA
ATCTAATCTCTTGGTGAAACTCAATAACTAGCAGCTGTAAATCTTATATTCTTACAATGT
ACCAATACATTTTTTCTCTTAACTCCCGGTATTATTCTATGCAACGAGTTAGAAAAAAAT
TACACAAGATATTTTAGAATGAACAAGAATATAATTGCG
| SMART |
FN3_dom (IPR003961) - T[89-181] 8.0 - T[194-281] 31.0 - T[294-376] 4.0 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[93-132] 1.96E-10 - T[254-379] 1.96E-10 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[194-294] 8.466 - T[296-389] 10.075 |
| Gene3D |
Ig-like_fold (IPR013783) - T[283-388] 1.3E-5 |
| CDD |
FN3_dom (IPR003961) - T[311-386] 2.64975E-6 |
| ProSitePatterns |
CD59_antigen_CS (IPR018363) - T[389-440] . |
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[511-570] 9.224 - T[572-630] 7.754 - T[669-728] 9.1 - T[729-789] 9.017 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[513-568] 1.34461E-9 - T[574-629] 1.66842E-4 - T[671-721] 3.21434E-9 - T[742-783] 8.34302E-7 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[513-568] 6.8E-7 - T[590-625] 0.004 - T[671-722] 7.3E-8 - T[740-787] 4.0E-6 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[513-576] 2.08E-11 - T[572-629] 8.76E-7 - T[670-733] 1.04E-10 - T[739-792] 1.25E-9 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[513-568] 1.0E-9 - T[574-628] 0.1 - T[671-726] 4.4E-8 - T[731-786] 5.1E-7 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[630-654] . |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[630-666] 2.9E-8 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[630-666] 22.209 |
| SMART |
EGF-like_dom (IPR000742) - T[633-666] 2.9E-6 |
| Pfam |
EGF-like_dom (IPR000742) - T[634-663] 2.6E-8 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[645-656] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[654-665] . - T[654-665] . |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[791-980] 1.07E-43 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[795-993] 1.5E-40 |
| SMART |
VWF_A (IPR002035) - T[796-972] 3.3E-28 |
| Pfam |
VWF_A (IPR002035) - T[798-956] 6.5E-32 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[798-975] 25.662 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LYAM2_HUMAN | 31.611 % | 110 | 6.98E-25 |
| COCA1_HUMAN | 30.18 % | 112 | 9.14E-25 |
| MATN2_HUMAN | 25 % | 101 | 8.58E-22 |