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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S1.g05924.02.t

Possible name(s)

COPS2; PSMD11

Gene model

Harore.CG.MTP2014.S1.g05924

Location

S1 [217,668 / 222,074]

Sequences

Amino acid sequence

Length: 420

>Harore.CG.MTP2014.S1.g05924.02.p
MAASMEFERAQTMGMRDQKSAINIFKDIVKRDVKSTDEEGIKLKEQSILELGNLLQKQGH
AEELGGLVKGVRPFLKSISKAKAAKLVRTLVDLFLDMEAGTGLEVQLCKECIEWAKEEKR
TFLRQALEARLVALFFDTKKYEEALKLGTSLLKELKKLDDKQLLVEVQLTESRTYHALGN
LQKSRAALTSARTTANSIYCPPKMQAALDLQSGILHAAGEKDWKTAYSYFYEAFEGYDSI
ESKRAVSALKYMLLCKIMLKSPEDVQSIVSGKLALKYAGREIDAMKSIAKSSQNRSISEL
KISLTEYEKELKTDVIICAHLDKLHDHLLEQNLLRIIEPFSRVQVEHVASIIGINLSIIE
KKLSQMILDKKFHGILSQGEGVLIQFDEPPVDKTYKTALEVITGMSLVVDSLYQKAKRLT

Nucleotide sequence

Length: 2,112

>Harore.CG.MTP2014.S1.g05924.02.t
GTTCAGTTTACAAGTCATGGTTTTAACATGATGCTTCAAATTAGTTCAAAATGACTAGAA
AGTCAGTTTCTAGTTACTATTATTCTATTATTTTCTCAGTAGATTTCACGAACATTGCAA
TTAATAGTTGATTTTGGAAAAAAGAAAAGGTTTATCCGTAGTATTACTATTAACTTCCTG
AGGCGAAGGACTATCCTAGTTTGAATCGTAGTTAACCAGTTCCAAAACCTTCACTATGGC
TGCATCGATGGAGTTTGAACGAGCGCAAACAATGGGTATGCGAGATCAGAAAAGCGCTAT
TAATATTTTCAAGGATATTGTTAAGAGAGATGTGAAGAGTACAGATGAAGAAGGAATCAA
GTTAAAAGAACAAAGTATTCTAGAATTGGGGAACCTACTCCAGAAACAAGGACATGCAGA
AGAACTCGGAGGACTCGTCAAGGGTGTTCGACCTTTTCTGAAATCGATAAGCAAAGCAAA
GGCAGCTAAACTAGTACGTACGTTGGTTGACCTTTTTCTCGACATGGAAGCAGGAACAGG
ACTCGAGGTTCAACTCTGCAAAGAGTGCATTGAATGGGCTAAAGAGGAAAAGAGAACGTT
CCTCCGACAGGCACTAGAAGCCAGACTCGTGGCTTTGTTCTTTGACACCAAGAAGTATGA
GGAAGCACTGAAGTTAGGTACTTCGCTTCTGAAAGAACTTAAAAAACTCGATGACAAACA
ACTACTTGTCGAAGTCCAGTTAACAGAGTCAAGAACATATCATGCACTGGGTAACCTTCA
GAAATCACGTGCCGCACTGACATCTGCCCGTACCACTGCAAATTCGATATACTGCCCACC
AAAGATGCAAGCAGCTCTTGACTTACAGTCTGGTATTTTACATGCAGCAGGAGAAAAGGA
TTGGAAAACAGCTTACTCATATTTTTATGAGGCGTTCGAAGGATACGACTCCATTGAAAG
TAAGCGGGCCGTGTCGGCGCTCAAATACATGTTGCTGTGCAAAATAATGCTCAAAAGTCC
CGAAGATGTGCAGTCCATCGTCAGTGGAAAATTAGCCTTGAAGTATGCAGGAAGAGAGAT
TGACGCAATGAAAAGCATAGCAAAGTCAAGTCAAAACAGATCGATATCGGAACTGAAAAT
ATCGCTGACAGAATATGAGAAAGAATTGAAAACGGACGTGATCATCTGTGCACATCTTGA
TAAATTACACGACCACCTCTTGGAACAGAATCTCCTAAGAATAATCGAACCATTTTCCAG
GGTGCAGGTTGAACATGTTGCAAGCATTATTGGTATTAATCTGAGCATCATTGAGAAAAA
GTTATCACAAATGATATTGGACAAGAAGTTCCATGGCATTTTATCTCAGGGCGAAGGTGT
CTTAATCCAATTTGACGAACCACCTGTTGACAAAACCTACAAAACTGCACTAGAAGTGAT
CACGGGTATGTCGCTCGTCGTTGACAGTCTCTATCAGAAAGCGAAGCGGCTCACTTAAAT
CCTCCGTCCATCGCTGTTTTAAACTGTTGCTAGAATGGGATCAGTTTATGGAAAAACTCT
TTTGCGAGATTAGTTACTATAGTAAATATCCTTAAATCTACTGTGTATAACTTGTAAGTA
TCTTTTGCTCTCCACTCATACTCATAGGAATATATATTTTCCTATGGCCAATTAGATCTT
GACTTCACTCAAAACTTTATCCTTGCTTATATTTTCTGTGTTGAATTAACTGCATAGAAT
TTTTCACTCTATGCTGCTGAAATCTCCATCTTCTTTTTGTGTTTCCTGATATGTCCAAAA
GAAATTAACTTCTCCAGGCCTTGGTGCTCACCCTCTCAGTTGTTGATTTGAGCATTCTTT
TTTAAAGGGAAGTATTGTTAAGCTTTCATGTAAATTTGTACAAAGAGCAGCATGTGTGCT
TTGTGATCCTAAAAATTTGAGACTCCAATCACGAAATTACAGACCTTACCATAAGCTCTT
TTTACAAAGCAAGCCCTGAGTCCATATTCGGTGATAATGTTATACTAAATCGGTCAAGAG
TTTTGTAAAGATTTATGTTATCCCCACCTGGTGAAATATGGTAAAATAAAATCTTTGTTT
TTCAATTGCCAA

InterProScan

PANTHER
PSMD11 (IPR035295) - T[2-420] 1.3E-209
Pfam
PCI_dom (IPR000717) - T[284-384] 2.0E-12
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[314-395] 4.35E-15
SMART
PCI_dom (IPR000717) - T[319-402] 2.2E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PSD11_HUMAN 70.644 % 632 0
CSN2_HUMAN 27.092 % 84.3 1.24E-17