- EST 'AHC0AAA224YK20_RM1' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Boleac.CG.SB_v3.S49....' >
- Transcript 'Harore.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S1.g11667.01.t
Possible name(s)
RPAP3; SPAG1; TOMM34
Gene model
Location
S1 [222,498 / 228,525]
Amino acid sequence
Length: 1,109
>Harore.CG.MTP2014.S1.g11667.01.p
MSNLLGTTPDMDITDHQMDYKYIDECNDRKILEKILRRLRSGKDGLYPHLIEHCENKVRT
LFPTSKVLRKDQPIIRPRDLDPDQQEKICNSFEQWQEQMTAVDKNLSQSCDSDILTNQMT
NHDSKLPPVRSAHLIKGNKKTVVVNEEKKNSKKIKSYDYKAWDKFDVEAECTKVDEETDD
IKTSTEGKRQLNIPLEVDSSGLSDSEKEIRASHEKNKGNEAFKAGDTEEAVIYYSHSISL
IPTPACYNNRALAYLKLEKWKEAIEDCDIVLSSENEQGNIKAKLRRATANKALGELDRAR
ADLSFVIEKEPNNARAKSILKEVEQLEKKKKTKKKEITKTKRKEITKTKKTEIPTNSGRS
MQIDEVDGESSDEDEEADDDQKSVLVNGTIKPNEDSLSAEENPENPSAVTDSNSATPENV
NCNQTSEQEMEEPTLVPVFPPDVLNLKNIGAELFKTGQYAEASGYYTKAIERMIKYNNDF
KPLEGQSHDLTFAVLHNNRAACWLKQGNDKACVEDCTKVLNVKSWDVKALMRRAVAYEHM
EKFVQAFVDFKAAESIEWNNPFAQSGSNRAANNLRQIHGAKWREKLPHVPVYAHRKNVFQ
NGAVPKETGSEEEKIPSGTENGEIKNRSEFPVNSDSPKEKIASTETVPKPEPKKVLKRDQ
VKESVGKVTSVDQVTAKESGSGDKVNAADPKFGKSSVKVNANVKKSKNNKKTNKKIKQEA
KKKEELEVEAKKEKIRKELYEKLKSQGNENVKKGAYAEAIECYTRCITMCPKEPASYTNR
ALCFLKLEKNVSAANDCTEAIKLDPVNVKAFYRRSQARKGEKMYKEASRDIAKLLTIDPG
NKTAKDEMEVLRKLINGKSTTQTEPPLQTENKRDDNRTAEASSNQGSKLPKKKIVIEEVS
DSSEDEEVQEKTETQNNQKLPVDEEVINMDLPPNMKIPDKEVTDSIVTDSHQTQKPEEQK
IKDIPKPQPIKEKYQNQPTVETQTPALTPFEFGNRWNAVPDKTNVLAYKAILDQSEPRDL
PLLISNKIDDTMIIIIAKIAALNIGQGEVNRGYDLMVNLSKSKRFSMATMFLSSDDRKIL
CETFEKLTDEVNEHLTKNDVKSLMKLYNL
Nucleotide sequence
Length: 3,463
>Harore.CG.MTP2014.S1.g11667.01.t
GCATGACATGCACGGTTGCGAAGGAATATGGGACGTTAACGGAAAACTTCTTGAAGTTCC
TGTTTCTGGTCTGTTCCTTCTTCCGTTTAAATATTATTTACCGTGAACTGACGACATTTA
ACGTGTGAAAACAATGTCTAATCTGTTAGGAACAACTCCTGATATGGATATCACAGATCA
TCAGATGGATTATAAGTACATCGATGAATGCAACGATCGAAAGATTTTAGAAAAGATTCT
TCGCCGATTACGCTCAGGAAAGGATGGATTATATCCCCATTTGATTGAACACTGTGAAAA
TAAAGTCAGAACCTTATTTCCTACTAGTAAGGTACTGAGGAAAGACCAACCTATCATTCG
TCCTCGTGACTTGGACCCCGATCAACAAGAAAAAATCTGCAACAGTTTTGAGCAATGGCA
AGAACAAATGACTGCAGTTGACAAAAACCTCAGCCAATCCTGTGACTCTGACATTTTAAC
CAACCAAATGACGAACCATGATTCCAAACTACCCCCTGTGAGGAGTGCACATCTAATAAA
AGGCAATAAAAAGACAGTTGTTGTTAATGAAGAGAAGAAGAATTCGAAAAAGATTAAAAG
CTATGATTACAAAGCGTGGGATAAATTCGATGTGGAAGCCGAGTGCACTAAAGTAGATGA
AGAAACTGACGATATTAAAACATCTACAGAGGGAAAGAGACAATTAAATATTCCGCTGGA
AGTTGATTCGAGTGGCTTGAGTGATAGTGAAAAAGAAATACGTGCCAGTCACGAGAAGAA
CAAAGGAAACGAAGCTTTCAAAGCAGGTGATACTGAAGAAGCAGTCATCTATTATAGCCA
TAGCATAAGTCTGATTCCTACACCAGCTTGCTACAATAACAGAGCTCTTGCATATTTGAA
ATTGGAAAAATGGAAGGAAGCGATTGAAGATTGCGACATTGTGCTTTCAAGTGAAAACGA
GCAAGGAAATATCAAAGCTAAATTGCGAAGAGCAACCGCTAACAAAGCACTTGGAGAACT
CGATCGTGCTCGGGCAGACCTTTCCTTTGTTATAGAAAAGGAACCTAACAATGCCAGAGC
GAAGAGCATACTGAAGGAAGTTGAACAACTGGAGAAGAAAAAGAAGACAAAGAAGAAAGA
AATTACAAAGACAAAGAGGAAAGAAATTACGAAGACAAAGAAGACTGAAATTCCTACCAA
TTCTGGCCGTTCAATGCAAATAGATGAAGTGGATGGTGAATCTTCTGATGAGGATGAAGA
GGCCGATGACGATCAGAAATCTGTTTTGGTTAACGGGACTATAAAGCCGAACGAAGACAG
TTTGTCTGCAGAAGAGAATCCTGAGAATCCATCAGCTGTCACAGATTCAAATAGTGCGAC
TCCTGAAAACGTCAACTGCAATCAAACATCAGAGCAGGAAATGGAAGAACCGACCCTTGT
CCCAGTATTTCCACCTGACGTTCTCAATTTAAAAAACATAGGTGCAGAGTTATTCAAAAC
CGGGCAGTATGCAGAAGCGAGCGGATACTACACCAAGGCCATTGAAAGAATGATAAAGTA
TAACAATGATTTCAAGCCATTGGAAGGGCAGTCTCACGATCTGACTTTCGCCGTTTTGCA
TAACAACAGAGCGGCGTGCTGGCTGAAGCAGGGCAACGACAAAGCGTGCGTGGAAGACTG
CACCAAAGTTTTGAACGTGAAATCCTGGGACGTAAAAGCGTTGATGAGACGAGCCGTCGC
TTACGAACACATGGAGAAATTTGTGCAAGCGTTCGTTGACTTTAAAGCGGCAGAGAGCAT
TGAGTGGAACAATCCTTTTGCTCAAAGTGGGTCAAACAGGGCAGCCAATAATCTGAGACA
GATACACGGTGCGAAATGGAGGGAAAAGTTACCGCATGTACCGGTGTATGCTCACAGGAA
AAACGTGTTCCAAAACGGTGCTGTGCCAAAAGAAACTGGTTCCGAGGAAGAGAAAATCCC
TTCGGGGACTGAGAATGGTGAAATTAAGAACCGAAGTGAATTTCCAGTAAATTCTGATTC
TCCTAAAGAAAAAATTGCCAGTACTGAAACTGTGCCAAAACCGGAGCCAAAGAAAGTGCT
CAAGCGAGACCAGGTTAAAGAAAGTGTTGGTAAAGTTACTTCAGTTGACCAAGTAACTGC
TAAGGAGAGCGGTTCTGGTGATAAAGTTAATGCAGCCGATCCGAAATTTGGCAAATCTTC
CGTGAAGGTGAACGCCAACGTCAAGAAAAGTAAAAATAATAAAAAGACGAACAAAAAGAT
CAAACAGGAAGCAAAGAAAAAAGAAGAGTTGGAAGTGGAAGCTAAGAAGGAAAAGATCAG
AAAAGAGCTTTATGAAAAGCTCAAATCACAAGGAAATGAGAATGTAAAAAAGGGTGCTTA
TGCAGAAGCTATTGAGTGCTACACCAGATGTATTACCATGTGTCCAAAAGAGCCAGCGAG
TTACACAAACAGAGCCTTATGTTTCCTGAAGCTGGAAAAGAATGTATCGGCCGCTAATGA
CTGCACGGAGGCCATAAAGCTCGACCCGGTCAACGTCAAGGCTTTCTACCGCAGATCCCA
GGCCCGGAAGGGTGAAAAAATGTACAAAGAAGCAAGCAGGGACATTGCAAAACTTCTGAC
TATAGATCCTGGCAACAAAACGGCAAAAGATGAGATGGAAGTCCTGCGAAAGCTAATAAA
TGGAAAAAGCACAACACAAACTGAGCCTCCTTTGCAGACAGAAAATAAGCGGGATGATAA
CAGGACCGCCGAGGCGAGCAGCAATCAAGGTAGCAAGCTGCCCAAGAAAAAGATTGTAAT
AGAAGAGGTCAGTGACAGCAGTGAAGATGAAGAAGTTCAAGAAAAAACGGAGACTCAAAA
CAATCAAAAATTACCTGTAGATGAAGAAGTAATTAACATGGATTTGCCTCCCAACATGAA
AATCCCTGATAAGGAAGTTACTGATTCCATAGTAACTGACAGTCACCAGACCCAAAAACC
CGAGGAGCAAAAAATCAAAGATATACCAAAACCACAACCAATCAAGGAGAAGTACCAGAA
TCAACCCACTGTTGAAACCCAAACTCCTGCACTGACTCCATTTGAATTTGGGAACCGTTG
GAATGCAGTGCCTGACAAGACAAATGTTCTTGCCTACAAAGCGATTCTGGATCAAAGTGA
GCCCAGAGATCTTCCTCTACTGATAAGCAACAAAATTGATGACACCATGATTATAATCAT
CGCAAAAATAGCAGCGCTGAACATAGGGCAGGGAGAGGTTAATCGTGGTTATGATCTTAT
GGTAAATCTCAGCAAAAGCAAAAGGTTTTCTATGGCTACAATGTTTCTTTCGTCAGACGA
TCGAAAGATTCTATGTGAAACCTTTGAAAAATTGACAGACGAAGTCAATGAACACTTAAC
AAAGAATGATGTGAAGAGTTTGATGAAACTTTATAATTTATAA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[203-360] 4.4E-34 - T[442-586] 1.0E-28 - T[729-889] 9.5E-37 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[211-244] 6.802 - T[244-313] 9.8 - T[443-476] 7.576 - T[493-560] 7.509 - T[740-841] 17.379 |
| SMART |
TPR_repeat (IPR019734) - T[211-244] 0.26 - T[245-277] 0.97 - T[280-313] 1.7 - T[443-476] 8.3 - T[493-526] 2.8 - T[527-560] 2.7 - T[740-773] 0.052 - T[774-807] 0.0016 - T[808-841] 13.0 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[213-337] 8.13E-24 - T[439-580] 2.53E-24 - T[735-853] 2.58E-26 |
| Pfam |
TPR_repeat (IPR019734) - T[751-772] 0.11 |
| Pfam |
RPAP3-like_C (IPR025986) - T[988-1077] 5.1E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPAP3_HUMAN | 28.499 % | 102 | 4.24E-22 |
| SPAG1_HUMAN | 35.323 % | 326 | 5.91E-96 |
| TOM34_HUMAN | 40.764 % | 120 | 1.43E-29 |