- Transcript 'Moocci.CG.ELv1_2.S64...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S1.g13663.01.t
Possible name(s)
ASCC3; HFM1; SNRNP200
Gene model
Location
S1 [355,594 / 362,703]
Amino acid sequence
Length: 2,144
>Harore.CG.MTP2014.S1.g13663.01.p
MADASARSLQYEYKANSNLVLQADRSLIDRRPRDEPTGEVISLQGKLTGMRMGDRAQRTK
PPQMEERRAKRHKRDEDQKTSVKLRGATLLSEGIDEMVNILYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEIILVLKNDRLRDKERRKEIQSLLGQQEDSRYHVLVNLGKKIT
DFGTDKGAETADDNIDETYGVNVQFESDEEEDDQENKYGEVQGDSEDEEDQDEGGVETEA
NMVVSANLTNEAGNVNVVKNRALHPRDVDAYWLQRNLSKVYDDAIVSQKKAEEVLDILKT
ASDDLQCENQLVMLLGFNQFDFIKVLRQNRQMILYCTLLASAQSDSAKKTIEDKMKNDSR
LSAILQQLRETNKEDIIREEQERRERVRRSKVDADLEAMETDQTDDALQPNQVVDLEDIM
FEQGSHLMANKKCQLPDGSYRKQRKGYEEVHVPALKAKPFGDDEKLTPIDALPKFAQAAF
EGFKSLNRIQSKLGKTALESDENILLCAPTGGGKTNVALLTMLREIGKHINPDGTINVND
FKIIYIAPMRSLVQEMVGNFGKRLAAYGIKVSELTGDHQLCKEEINATQIIVCTPEKWDI
ITRKGGERTYTQLVRLLIIDEIHMLHDDRGPVLEAVVARTIRSIETTQEDVRLVGLSATL
PNYEDVATFLRVDPSKGLFFFDNSFRPCPLEQQYIGITEKKAIKRFQVMNEVVYEKVVDN
AGKNQVLIFVHSRKETGKTARAIRDMCLENDTLGHFLREGSASTEVLRTESEQVKNLELK
DLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYS
PEKGRWVELGALDVLQMMGRAGRPQYDTKGEGVLITSHSELQYYLSLLNQQLPIESQMVA
KLPDMLNAEIVLGNVQTVRDAVNWLGYSYLYIRMLRHPALYAISHDTLKADPLLQQHRVD
LIHAAANILDKNGLAKYDRKSGNLQVTDLGRIASHYYCTYESMATYNQLLKPTLSEIELF
RVFSLSSEFRYINVREEEKLELQKLLERVPIPVKEGIDEPSAKINVLLQTYISQLKLDGF
ALMADMVYVTQSAGRLMRAIFEIVLYRGWAQLTEKCLSLGKMINRRMWQSMTPLRQFKKV
PEEVVKKIEKKNFPWERFYDLNHNEIGELIRMPKMGKTLHKLIHQFPKMELSVHIQPITR
STLRVELTITPDFQWDEKVHGSSEAFWILVEDVDSEIILHHEYFLLKRKYATDEHIVNFF
VPVFEPLPPQYFIRIVSDRWLASETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNP
EFESLYEDKFPCFNPIQTQVFNALYHSDDNVFIGAPTGSGKTVCAEFAMMRALAQNPDAR
CVYVTPMDALAEITYQDWREKFEVQLGKRVVLLTGETSTDLKLIAKGNIVIATPEKWDVL
SRRWKQRKNVQNVSLFVVDEIHLLGGEAGPELEVVCSRMRYVSSQLERQIRIVALGSSLA
NAKDAAQWLGCSATHTFNFHPNVRPVPLEIHIQGFNISHAQSRVLSMAKPVYNAVVKHSP
KRSVIVFVASRKQTKLTAVDMLTYAAADSQPQRFLHCKEEDLAPYLEHVKDETLKETLSN
GVAYLHDGTTSVERKVVDQLFSSGAVQVLVASRSLCWGLTVAAHLVVVMDTQYYNGKIHA
YVDYPVTDVLQMIGRANRPLKDEEGKCVIMCQGSKKDFFKKFVYEPLPVESHLDHCLHDH
FNAEIVTKTIENKQDAVDYMTWTFLYRRMTQNPNYYNLQGVSHRHLSDSLSELVENTLSD
LEQSKCIAIEDEIDVSPLNLAMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEY
ENIPIRHREDATLRQLLEKVPYKPQNPRFTDPHIKTNLLLQAHLSRLQLPAELQSDTEVI
LSKSVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFSPDIIKRCT
EKEIESVFDILEMEDDERNGILRLTDAQMADVARFCNRYPNIELMYDVMEQENLRAGHPV
VVVVTLEREDEVSGPVIAPFFPQTREEGWWVVVGDPKSNSLISIKRLTLQQKAKVKLDFI
PPSAGTHSYTLYFMSDAFMGCDQEYKLSINVHESDGENSGSDSD
Nucleotide sequence
Length: 6,728
>Harore.CG.MTP2014.S1.g13663.01.t
GTCATAATAGCTAATACGTCAAGAATATTTCTACTTAATATATAGAAATATAAAGAATGG
CTGACGCATCAGCCCGTTCGCTTCAGTACGAGTACAAAGCCAATTCCAATCTTGTACTTC
AAGCAGATAGATCATTGATAGACAGAAGACCCCGTGATGAACCTACAGGCGAAGTTATAT
CACTGCAGGGTAAGCTGACAGGAATGAGAATGGGCGACCGAGCTCAGCGCACCAAGCCTC
CTCAGATGGAAGAAAGACGTGCTAAGCGTCACAAGAGAGATGAGGATCAAAAAACTTCAG
TAAAGCTCAGAGGTGCAACACTTCTTTCTGAGGGAATAGACGAAATGGTGAACATTCTTT
ACAAGCCCAAAACCAAGGAGACGAGAGAAACTTATGAAATTTTGCTCAGTTTTATACAGG
CGGCTTTGGGGGATCAGCCTAGGGACATCCTTTGTGGTGCTGCAGACGAGATCATCCTGG
TTTTGAAGAACGACAGGCTCAGAGACAAAGAGAGACGAAAAGAGATTCAGTCTTTACTGG
GACAGCAAGAAGATTCCAGATATCATGTGCTTGTCAACTTGGGTAAAAAGATAACTGATT
TTGGTACGGACAAGGGAGCTGAAACAGCTGACGACAACATTGATGAAACGTATGGAGTCA
ACGTCCAGTTCGAGTCAGATGAAGAAGAAGACGATCAGGAAAACAAGTATGGTGAGGTTC
AGGGAGATTCTGAAGATGAAGAAGACCAGGATGAGGGAGGAGTGGAAACTGAGGCGAATA
TGGTTGTTTCTGCCAATCTCACAAATGAAGCAGGAAATGTAAATGTTGTAAAAAACAGGG
CTCTGCACCCAAGAGACGTGGATGCCTACTGGCTCCAAAGAAACTTGAGCAAAGTGTATG
ATGATGCTATTGTATCACAAAAAAAGGCTGAGGAAGTTTTAGATATTTTAAAGACTGCTT
CGGATGACCTGCAGTGTGAGAATCAGCTTGTGATGCTGTTGGGATTCAATCAGTTTGATT
TCATCAAAGTTTTACGACAGAACAGGCAGATGATTCTCTATTGTACGCTTCTGGCTAGTG
CACAAAGTGACTCAGCGAAGAAGACAATTGAAGACAAGATGAAAAATGATTCAAGGCTCT
CTGCCATCCTGCAACAACTAAGAGAAACAAACAAGGAAGATATTATTAGGGAGGAGCAGG
AGAGACGTGAACGAGTACGTAGAAGCAAAGTGGATGCCGATCTAGAAGCCATGGAAACAG
ATCAGACCGATGATGCTCTCCAACCAAATCAAGTGGTTGATCTTGAAGATATTATGTTCG
AGCAAGGATCTCATCTCATGGCTAACAAAAAATGTCAATTGCCTGATGGCTCGTACCGTA
AACAACGCAAGGGGTATGAGGAAGTTCACGTACCAGCCCTAAAGGCCAAGCCTTTTGGGG
ACGATGAAAAATTAACTCCCATTGACGCTTTGCCAAAATTTGCACAAGCTGCATTTGAGG
GTTTCAAAAGTTTAAACAGAATCCAGAGTAAACTTGGAAAAACAGCTTTGGAAAGCGATG
AAAACATTCTCCTCTGTGCGCCGACAGGAGGCGGTAAAACTAATGTGGCCTTGCTGACAA
TGCTCAGGGAAATCGGGAAGCACATCAATCCAGACGGAACAATAAATGTGAATGATTTCA
AAATAATCTACATAGCTCCGATGAGATCTCTGGTACAGGAAATGGTCGGAAATTTTGGGA
AGAGATTGGCGGCTTACGGAATCAAAGTTAGCGAACTCACAGGAGACCATCAGTTGTGCA
AGGAGGAAATAAATGCGACACAAATCATAGTCTGCACCCCGGAAAAATGGGACATCATTA
CCCGGAAGGGAGGAGAGAGAACGTACACGCAATTGGTACGACTGCTGATTATTGATGAAA
TCCACATGCTGCACGATGACAGAGGACCGGTTCTTGAAGCAGTCGTGGCACGTACCATTA
GATCAATTGAGACTACACAGGAGGATGTTCGTCTTGTCGGACTTTCCGCCACCCTTCCCA
ACTACGAGGACGTAGCTACTTTTCTGCGTGTTGATCCCTCCAAAGGCTTGTTTTTCTTTG
ACAACAGCTTCAGGCCTTGTCCTTTAGAGCAACAATACATAGGAATAACTGAGAAAAAGG
CCATAAAAAGATTTCAAGTCATGAACGAGGTAGTGTATGAGAAAGTGGTTGATAACGCTG
GCAAAAATCAGGTACTGATCTTCGTTCATTCGCGAAAAGAAACTGGAAAAACAGCCCGTG
CTATTCGGGACATGTGTCTTGAAAACGATACCCTCGGACATTTCCTCCGCGAAGGATCGG
CATCCACAGAAGTCTTGCGTACGGAATCAGAACAAGTGAAGAACCTAGAGCTGAAAGACC
TGCTTCCCTATGGTTTCGCTATCCATCATGCCGGAATGACCCGTGTCGACAGAACCTTGG
TCGAAGACCTTTTCGCAGATCGTCATATTCAAGTCCTGGTTTCCACGGCGACATTGGCGT
GGGGTGTCAATCTTCCGGCACATACTGTCATCATCAAAGGGACTCAGGTTTACAGCCCTG
AAAAGGGCAGATGGGTTGAATTAGGAGCTCTTGATGTGCTGCAGATGATGGGACGTGCTG
GCAGACCTCAGTACGATACCAAGGGTGAAGGCGTGCTCATAACATCACATAGCGAATTGC
AATACTATCTCTCGCTTCTTAATCAGCAATTGCCAATCGAAAGTCAGATGGTTGCCAAGT
TACCTGATATGTTAAATGCAGAGATAGTTCTTGGAAATGTTCAGACTGTGCGAGATGCGG
TAAACTGGCTCGGATACTCCTACCTCTATATCAGAATGCTGCGACATCCCGCTCTGTATG
CTATAAGCCACGATACATTGAAGGCCGATCCTCTACTTCAACAGCATCGAGTGGATCTCA
TTCACGCTGCTGCAAACATTCTGGACAAAAACGGCTTGGCAAAGTATGATCGTAAGTCGG
GAAACCTGCAGGTAACAGACCTCGGACGTATCGCCAGTCATTATTACTGTACTTATGAAA
GTATGGCGACGTACAACCAGCTTCTTAAACCGACGCTGAGCGAAATAGAGCTATTCAGAG
TGTTTTCACTCTCTTCTGAATTCAGGTATATTAATGTCAGGGAGGAGGAGAAGCTCGAGC
TGCAGAAGCTGTTGGAGAGAGTTCCAATCCCAGTCAAGGAAGGTATAGATGAGCCTTCTG
CTAAAATAAATGTTCTCCTGCAAACCTACATTTCACAGCTTAAGCTGGATGGATTTGCAC
TGATGGCAGACATGGTATATGTCACACAGTCAGCAGGAAGACTCATGAGGGCGATATTTG
AAATCGTGTTGTATCGTGGCTGGGCACAACTTACGGAAAAATGTTTGTCGCTCGGCAAAA
TGATTAATAGACGGATGTGGCAGTCGATGACCCCTCTTCGACAGTTCAAGAAGGTACCAG
AAGAGGTTGTGAAGAAGATAGAGAAGAAAAATTTTCCTTGGGAACGCTTCTATGATCTGA
ATCACAACGAAATAGGCGAACTGATCAGAATGCCGAAGATGGGGAAAACATTGCACAAAT
TGATTCATCAGTTCCCAAAAATGGAGCTCTCTGTCCACATACAACCTATCACCAGATCCA
CACTACGTGTAGAACTAACGATCACACCGGACTTCCAGTGGGATGAAAAAGTGCATGGTT
CATCAGAGGCTTTCTGGATCCTTGTTGAGGACGTCGACAGTGAAATCATTTTACATCATG
AATATTTCCTACTGAAAAGAAAGTATGCCACTGATGAGCACATTGTAAATTTCTTTGTGC
CCGTCTTTGAGCCTCTGCCTCCGCAATACTTCATACGCATTGTGTCTGACAGATGGCTAG
CTTCAGAAACCCAACTTCCGGTTTCTTTCCGTCATTTGATCTTGCCGGAAAAGTATCCAC
CTCCGACGGAACTTCTAGATCTGCAGCCTCTTCCCGTGACGGCTTTGAGGAACCCGGAAT
TTGAATCCCTTTACGAGGATAAGTTTCCCTGCTTCAATCCAATCCAGACCCAAGTTTTTA
ATGCTCTATACCACAGCGATGACAACGTTTTCATTGGTGCACCTACAGGCAGTGGTAAGA
CCGTGTGTGCTGAATTTGCAATGATGCGTGCCCTGGCTCAAAATCCAGACGCCAGGTGCG
TTTACGTAACTCCGATGGATGCTCTTGCCGAAATCACTTATCAGGATTGGAGAGAAAAGT
TTGAGGTGCAGCTTGGCAAACGTGTCGTTTTGCTAACAGGAGAAACGAGTACAGATTTGA
AGTTGATTGCTAAAGGCAACATTGTCATTGCTACGCCAGAGAAATGGGATGTTCTCTCCA
GAAGATGGAAGCAGAGAAAGAACGTCCAGAATGTTTCGCTCTTCGTAGTGGATGAGATTC
ATTTGCTTGGAGGTGAAGCTGGACCGGAGCTTGAAGTAGTTTGCTCCAGAATGCGATACG
TTTCTTCGCAGCTGGAGCGACAGATCCGTATTGTGGCGCTTGGTTCTTCTCTTGCAAATG
CTAAGGATGCTGCGCAGTGGCTGGGATGTAGTGCCACTCATACATTTAATTTCCACCCCA
ACGTTCGGCCAGTTCCATTGGAGATTCATATTCAGGGCTTCAATATCAGCCATGCCCAGT
CCCGTGTGCTCAGTATGGCAAAGCCGGTGTATAACGCCGTAGTAAAACACTCTCCGAAAC
GTTCAGTTATTGTATTCGTCGCATCGAGAAAGCAAACGAAGCTAACTGCTGTTGACATGC
TGACTTATGCTGCTGCTGACAGTCAGCCCCAGAGATTCCTTCATTGCAAAGAGGAAGATC
TTGCTCCCTATTTAGAGCATGTCAAGGATGAAACACTGAAGGAGACTTTGAGCAATGGTG
TCGCCTATCTTCATGACGGCACCACGTCCGTGGAGCGAAAAGTTGTGGACCAACTCTTTT
CCTCCGGTGCCGTCCAGGTACTTGTCGCTTCGCGTAGCCTGTGTTGGGGTTTGACGGTAG
CTGCACATTTGGTCGTCGTCATGGACACCCAATACTACAATGGTAAGATTCATGCATATG
TGGACTACCCGGTCACGGATGTGCTGCAGATGATTGGGCGTGCAAACCGACCTCTGAAAG
ATGAAGAAGGAAAATGTGTCATTATGTGTCAAGGATCAAAGAAAGATTTTTTCAAAAAAT
TTGTGTACGAACCCTTACCTGTTGAATCTCACTTGGACCATTGCTTGCACGACCACTTCA
ATGCTGAAATTGTGACCAAAACTATTGAAAACAAGCAGGATGCAGTGGACTACATGACCT
GGACATTTTTATACAGGCGTATGACACAAAATCCTAACTACTACAACTTGCAGGGTGTAT
CGCACCGTCATTTGTCGGACAGTCTGTCAGAGCTGGTAGAAAATACTTTGTCTGATCTAG
AGCAATCTAAATGCATTGCGATCGAGGATGAAATCGACGTATCGCCGCTCAACCTGGCCA
TGATCGCGGCTTACTATTACATTAACTACACCACAATTGAGTTGTTCAGTATGTCCTTGA
ATGCCAAAACCAAAATTCGTGGCCTCATTGAGATCATCAGCAACGCTGCAGAGTATGAAA
ACATCCCTATCAGGCACAGGGAAGACGCTACACTCAGACAGCTTCTAGAGAAAGTGCCAT
ACAAACCACAGAACCCAAGGTTCACAGACCCCCACATAAAAACCAATCTTCTACTCCAGG
CACATCTGTCGCGTCTTCAACTGCCAGCAGAACTGCAGTCTGACACCGAGGTTATTTTGA
GCAAGTCCGTGCGACTTATCCAGGCCTGCGTGGACGTTCTGTCATCAAATGGCTGGCTAT
CACCGGCACTGGCTGCTATGGAATTGGCGCAGATGGTAACACAGGCTATGTGGAGCAAGG
ACTCCTATCTCAAACAGCTGCCACATTTCAGTCCTGACATTATCAAGCGATGCACTGAGA
AGGAAATCGAGAGCGTGTTTGACATCCTTGAGATGGAAGACGATGAACGAAATGGTATCC
TGCGTCTAACGGATGCCCAGATGGCGGATGTGGCTAGATTTTGCAATCGTTACCCTAACA
TTGAGCTCATGTATGATGTAATGGAACAAGAAAACTTGCGAGCTGGCCATCCAGTTGTTG
TTGTCGTAACTCTTGAGCGTGAAGACGAAGTATCGGGTCCTGTGATCGCACCCTTTTTCC
CCCAAACCAGGGAAGAGGGCTGGTGGGTCGTGGTTGGTGATCCGAAGAGCAACAGCTTGA
TTTCAATCAAGAGACTAACGTTGCAGCAGAAAGCAAAGGTCAAACTTGACTTCATTCCAC
CCTCTGCCGGGACTCATTCGTACACTCTGTATTTCATGAGTGACGCCTTCATGGGCTGCG
ACCAGGAATACAAACTCTCAATCAATGTTCACGAATCGGATGGAGAAAACAGTGGAAGCG
ATTCGGATTAGATTTTCGTGTTACAAGGCAGAATAGTGAAAATCATGCATATCGGATACT
GGCTTCACTTTATGAAGAAGGATTTGAATTCTTTGCCTTTATTGTAGTTTTGTAAATGCA
AGTTGCTCCGTATGCATTGTAGGAGAGAAGTAGTTTTTTACCATTCTACTCCACCGATCC
ATTTGTATATATGTGCTTGTGATAATTGTAACATGATCATCTGAAATAAACTACTACATA
ATCACAGA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[426-671] 1.77E-44 - T[681-893] 2.13E-47 - T[1219-1475] 1.12E-49 - T[1503-1514] 1.12E-49 - T[1519-1728] 2.97E-40 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[482-693] 1.0E-31 - T[1329-1533] 3.3E-27 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[488-663] 3.6E-26 - T[1335-1518] 1.9E-25 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[495-678] 21.613 - T[1342-1517] 20.726 |
| SMART |
AAA+_ATPase (IPR003593) - T[500-817] 0.24 - T[1347-1522] 1.8 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[689-926] 11.993 - T[1550-1758] 10.051 |
| CDD |
Helicase_C (IPR001650) - T[689-863] 2.87146E-13 |
| SMART |
Helicase_C (IPR001650) - T[773-865] 4.9E-17 - T[1612-1700] 4.1E-10 |
| Pfam |
Helicase_C (IPR001650) - T[774-863] 1.6E-6 - T[1611-1698] 7.2E-5 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[893-997] 7.34E-6 - T[1728-1828] 2.99E-7 |
| SMART |
Sec63-dom (IPR004179) - T[986-1291] 6.7E-124 - T[1817-2129] 1.4E-113 |
| Pfam |
Sec63-dom (IPR004179) - T[987-1290] 6.8E-92 - T[1817-2128] 2.9E-78 |
| Gene3D |
C2_domain_sf (IPR035892) - T[1186-1294] 1.7E-49 - T[2020-2142] 1.9E-45 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[2021-2133] 1.02E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ASCC3_HUMAN | 42.387 % | 1568 | 0 |
| U520_HUMAN | 80.317 % | 3600 | 0 |
| HFM1_HUMAN | 33.181 % | 317 | 6.64E-88 |