Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S1.g14830.01.t

Possible name(s)

SCN2A; SCN5A; SCN9A

Gene model

Harore.CG.MTP2014.S1.g14830

Location

S1 [610,190 / 612,777]

Sequences

Amino acid sequence

Length: 374

>Harore.CG.MTP2014.S1.g14830.01.p
MTAVGVRLDRVMSQLASNARMPAKAFNCLFTASAISDLIEQYFVQPTLFRIIRLFRVTRI
LRLIREAKGIRTLLFALMMSIPALFNIGSLLMLVIFIYAILGMSQFAYVQKIAGVNDLLN
FETFPNSFLVLFQMSTSEGWNTFIEPILRDKPPFCDPTIANPTNNGNCGNSTVGVVYFVT
FVLITFLIVINMYIAIILENFEVATRESSEPLTADDFEQFFEVWQRYDDRLTQFVTFDQL
QHLLHHLDFPLQVRFPNAAFIANARMRITPDGNVHCLEVIIALIKRVLGDSPELNNFKEA
MVQSFMLKCRSKESPNQEETIDTMEYVRRLKAVVVLQRAYRDYKCRLGDVCEESDNSLDS
SNESFRTDSEAQPD

Nucleotide sequence

Length: 1,125

>Harore.CG.MTP2014.S1.g14830.01.t
ATGACCGCTGTTGGGGTGCGTCTTGATCGGGTGATGTCCCAACTAGCGAGCAACGCGCGC
ATGCCTGCAAAAGCCTTTAACTGCCTGTTCACAGCTAGCGCGATCAGCGATTTGATCGAA
CAGTACTTCGTACAGCCGACGCTCTTCCGGATCATCCGACTGTTCCGCGTCACAAGAATC
CTTCGACTGATTCGAGAGGCGAAGGGCATACGAACTTTGCTTTTTGCTCTAATGATGTCT
ATACCTGCCTTGTTCAACATCGGTAGCCTCCTGATGCTCGTAATCTTCATCTACGCCATA
CTTGGCATGTCTCAGTTCGCTTATGTACAGAAAATTGCCGGGGTCAACGACCTTCTCAAT
TTCGAGACTTTTCCTAATTCCTTTCTGGTACTCTTTCAGATGTCAACTTCCGAAGGTTGG
AACACTTTCATTGAACCAATACTCAGAGACAAACCTCCTTTCTGCGATCCGACGATAGCA
AATCCGACGAATAATGGAAATTGCGGGAATTCGACCGTAGGAGTTGTATACTTTGTTACG
TTCGTATTAATCACTTTTCTCATCGTGATTAATATGTACATCGCGATCATTCTTGAAAAC
TTTGAAGTGGCGACACGAGAGAGTTCAGAACCCCTCACTGCTGACGATTTCGAGCAGTTT
TTCGAGGTGTGGCAACGCTATGATGATCGATTAACGCAGTTCGTCACTTTTGATCAGTTG
CAACATCTTCTTCATCATCTCGATTTTCCTCTCCAAGTTCGATTTCCAAATGCTGCCTTC
ATTGCTAATGCGCGAATGCGTATCACTCCAGATGGTAATGTCCACTGTCTGGAAGTAATA
ATTGCCTTAATTAAAAGAGTACTAGGAGATTCTCCCGAACTGAACAATTTCAAAGAGGCG
ATGGTTCAATCCTTTATGTTGAAATGTCGAAGCAAGGAGTCACCTAATCAGGAAGAGACC
ATCGATACCATGGAATATGTCAGGCGTCTCAAAGCGGTCGTTGTTTTACAGCGCGCATAC
AGAGATTATAAATGTAGACTTGGCGATGTATGCGAAGAATCGGATAATAGTCTTGATTCT
AGCAACGAAAGTTTTCGAACAGATAGCGAAGCTCAGCCGGATTGA

InterProScan

Gene3D	Volt_channel_dom_sf (IPR027359) - T[26-67] 4.4E-5
Pfam	Ion_trans_dom (IPR005821) - T[44-208] 1.5E-33
PRINTS	Na_channel_asu (IPR001696) - T[180-199] 1.6E-11 - T[215-228] 1.6E-11

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SCN2A_HUMAN	50.804 %	329	1.29E-101
SCN4A_HUMAN	51.282 %	336	3.22E-104
SCN9A_HUMAN	52.229 %	340	1.88E-105