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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'
  2. Transcript 'Harore.CG.MTP2014.S2...'
  3. Transcript 'Harore.CG.MTP2014.S1...'
  4. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S1.g14830.03.t

Possible name(s)

SCN2A; SCN5A; SCN9A

Location

S1 [584,913 / 608,503]

Sequences

Amino acid sequence

Length: 2,649

>Harore.CG.MTP2014.S1.g14830.03.p
MHKVCLLLDYSRACKQSSRWFRTPSTIVDVHFRKKKKSMDNNSKDVVRHRVQYSDNMSIC
SRETLMENPADEQLNQPGTNIDLIGNEEEFAIDSESDQSVTSSAYYAAKKRARKTKRLHL
MQEHEEAKLKLHKRRRGQWPSDEITSRFGRLLGSLLGIWDTLFDEETFIVVNNDLTVFRF
SEAKSLFLFGKDSRIRQAAINLFIRPIFSHFIMLVILANCFCMVLAVPPFWVEAYLEYVF
TAIYCMEALIKIIARGFVLHRFSYLRDPWNWLDFIVIVFALITEVLKALVSEHVSQFSVL
RAFRVLRALKTMSVVPGLRAIVKALLRSIRALKDAIVLTIFCVSVFALIGYQLFHGTLRN
KCVLEPGNFDLAPDAMYVVDLLQRLPDGFKNESSESGNNADIRTFPAIGLYESCGSVSED
ISSLEKFENLAESLTWNEYDEHLTASLVNALNETRFNVSKTDKLLKSRDTSHVDSTIQST
VVPPLLFSDEPFRSSTEPNLSKSNCPKLYNECIVKDSYDVTTSSTSSLLQLATIMTYGSK
EEVFSRWDCYYDDDQTQTPTTREFGVSSSTFSYYSDSNIQYSETRPAKCSISVVAFSANI
SCMYSKLTLTEKVTFDNGTRNLTASDLPCQDNIWVRTMTYGETQVPFWETRKSIIFFTVQ
REEVKNASRVSKRDVKQRDVDASEDEGFFNDTMFLLFDQLSRKEMSKEEESDWNWEKAHY
LMTDTDSGQYFYLNSSNRPPSEPQYCILGDNAMCPSGYKCQEAGGNPDFGYTNFDQFFWA
FLTSFRLIAQDAWSRLYYLTLHTIGKTYVIYYIIIMFLGSYYLINLILAVVYMAYEEQQA
VSDEEEIIDAKEGAVAEEEILGSRTSLKSGPLESRHCDLITTSLTSITDSLPRSRYGGSR
RSRYGQRRTPKPDPVSDHLYHKFTLRHGDGISNENLENLSCDLESEEGKCHPWRWRSRRS
SYASDLSHTMSIRSVCTRCNSKDDLSHRLQFPSHGRRRCSRSMCEDSCSDLPMSTHVFNP
VVSNTTESGPTEKDGQISIPVPIILKQKYSKLDVLPVEYSRGRSNSVCSSISESGTFSIA
VPYYCQECRKKRKCRMSSSSSGQSTVLLDASSLRQKSESRDPNEDSTFLPIPIDRANRLS
SSSSASFDAEEQVVQAEISHTSHWLTPPSGGSIASSKNAELGSCNALSTLSQRRDSTLPT
YGMSLTSSPPLQVPCLLITSASSEHISSLSKEASESSLVNTDKLLKEKSPDLVCNTLEWG
VTHEEEIIPKKKLDVFLPGVSETGDSSCAAFKRRQWRDQINSFSNVENEEAPLCNIREVC
GEDLGSPTTMFSSRSQSQNFSQYDAAAAFRAVAFNEDVESYEMPLMDGVQNGETQHDQEL
QVVTHHECSEKKSRPFKRMVQHNYNGFKRAVTNVFCKWSCCPSCWQPFQANMKIFVLDPF
MDLFITLCILLNTLSMTIEQHPMEQWFQNMLEQANLAFTIIFALEMFLKIIGMGPHTYFK
ETWNLFDAVIVISSLLELLLQSIQGISVLRTFRLLRILKLAKSWPTLNKLLRIIGRTLGK
LWHLTIVFLLVLFIFAVVGMQLLREKYVEEYHDNMPRWNFVDFQHSFMVVFRIQCGEWIE
NMFACMNIAHPGICIPLFVLVYIIGNLVILNLFLALLLNSFCGDALQRIDSERNSIAEAM
VRIRRWSRKCRKFLRSCNVIMHCCNKIQLQLSLRKKTSCNEPKIKPIAMKKKMKNGNGST
DLPMDPASTGTTFLNEDVHSSNNTSKRDPDPDPVISCKAVDKQPGTHNENSTKPLNGDKP
VTTTLPDLLDNNNHTVQKNDTENENDDHGHHQHHHQQQHHHHHHSHSHHRSNTRRRNSRC
YIDHNSLRQGSDEKDSPCHKIHRPRNEEARHHKHHVVRCHGCNTQIMPKSPERRLPRRRI
KEGFAPASEFQNDTFNENKVDPSNRDDEETSPMIQQEDTNIPASRSRFPAYDSIEYTRTP
SCEREILGQKRSSKRNRKSKSVEESIDEVVGRSRNTKRDSWKQGQASSLPLSRKNSPIPA
PAMLDVSTAAGKLLKYKGAEESDVPLRGSVHSSRPPSIKNGSTANGGILRRKSTASVSVR
YHSGRASISSVKSNYSSIRSHKPLSNASSAAELGAAATEETETKEEIRECMPLCFNEPKD
GDWWKIRKFFYDVVNHPYFENLVIFCILLSSIALAFEDIHLNSRPTMKRVLEVLDIIFCI
FFTVEMLLKWIGHGLKYYFTNAWCLLDFVIVFVSLLNLSMSKSDLGSLRVLRTFRALRPL
RALSRFQGMKVVVDALMRAIPSIAHVFLVCVIVWLIFSILGVNLFAGRFGRCVLLTGDTG
IILPRPPDDANETFVSANINELCNPNITLPLRESQMPQIANKQNCTECGELTLIQWVIPS
INFDNVFQGLLALMQVATFKGWLEIMNNAIDIRGIEVQPSYEYSFHNYLYFCIFIVFGAF
FSLNLFIGVIIDNFNQQKVKCAGGEDGVFLTDEQRRYYNAMKKMAAKTPKKPIPRPTSRV
ANKIYDLVTSRKFEIIVMAMILLNMVVMALEHYDMSPRMDLILENFNFVFIGIFTVEAIL
KLIGLRQYYFTIPWNVFDIIVVVVSVIGKLIRRFVRGTGDLYCLKHNNSINNNITLFYCT
IFFVYSAKA

Nucleotide sequence

Length: 7,950

>Harore.CG.MTP2014.S1.g14830.03.t
ATGCATAAAGTATGTTTACTGCTAGACTACTCTAGGGCCTGTAAGCAAAGCAGTAGGTGG
TTTCGTACTCCAAGTACAATCGTAGATGTACATTTTCGCAAGAAAAAAAAATCAATGGAT
AACAACAGCAAGGACGTCGTTCGACACAGAGTGCAGTACTCGGATAATATGTCGATTTGC
AGCCGCGAAACGCTAATGGAAAACCCGGCAGACGAACAGCTCAATCAACCGGGGACCAAC
ATTGATTTGATCGGTAACGAAGAAGAATTTGCAATAGATTCGGAATCGGACCAGAGTGTC
ACGTCTAGCGCTTACTATGCGGCAAAGAAACGAGCGCGAAAAACGAAACGATTACATCTG
ATGCAGGAACATGAGGAAGCCAAGCTCAAGCTCCATAAACGCAGGAGGGGACAATGGCCT
TCTGATGAAATTACCTCTCGCTTTGGTCGCCTCCTCGGAAGTTTGTTGGGTATTTGGGAT
ACGTTGTTTGATGAAGAGACTTTCATCGTCGTCAACAATGATCTGACCGTTTTTCGATTC
AGCGAAGCCAAATCTCTTTTTCTCTTCGGTAAAGACAGTCGGATACGACAAGCAGCCATC
AATCTCTTCATCCGACCGATATTTTCTCATTTTATAATGCTGGTCATATTGGCCAACTGT
TTTTGTATGGTGCTCGCCGTGCCTCCGTTCTGGGTAGAAGCCTATCTCGAATACGTATTC
ACGGCGATATATTGCATGGAGGCGTTGATAAAAATCATTGCCCGTGGCTTCGTGCTCCAT
CGATTTTCTTATTTACGGGATCCCTGGAATTGGCTGGACTTCATAGTCATTGTGTTTGCG
TTAATTACCGAAGTTTTAAAGGCCCTCGTTTCCGAACATGTCAGTCAGTTTTCTGTTTTG
CGAGCCTTCCGAGTCCTGAGAGCGTTGAAGACGATGTCGGTTGTTCCAGGGTTAAGGGCG
ATCGTCAAAGCCCTACTTCGTTCTATACGCGCCTTGAAGGACGCGATCGTATTAACTATT
TTTTGCGTATCGGTGTTCGCGTTGATCGGATATCAACTTTTCCACGGAACTCTGCGAAAC
AAATGCGTTTTGGAACCGGGAAATTTCGACCTTGCTCCGGATGCCATGTACGTTGTGGAT
TTACTACAGAGACTGCCAGATGGATTTAAAAATGAATCTTCCGAATCTGGCAATAACGCT
GATATACGAACGTTTCCGGCAATCGGGCTGTACGAAAGCTGTGGTTCCGTGTCAGAAGAC
ATTTCATCGTTGGAAAAATTTGAAAATTTAGCAGAATCATTAACTTGGAACGAGTATGAT
GAACATTTGACTGCTTCTCTAGTAAATGCTCTCAACGAAACACGGTTCAACGTTTCTAAA
ACAGATAAACTCTTAAAATCACGTGATACGAGTCATGTGGATTCCACGATCCAATCAACG
GTCGTTCCTCCTCTGCTATTTTCCGATGAACCATTTCGCAGTTCAACAGAACCAAATCTT
AGTAAATCGAATTGTCCAAAATTATATAACGAGTGCATTGTCAAAGACTCATATGACGTA
ACGACATCTTCTACGTCATCACTGCTGCAACTGGCTACTATTATGACCTACGGTTCGAAA
GAGGAGGTGTTCAGTCGTTGGGATTGTTATTACGATGATGACCAGACGCAAACGCCCACA
ACTCGAGAGTTCGGTGTTTCTTCCAGCACTTTTTCTTATTATTCCGATTCTAATATTCAG
TATTCAGAAACGAGGCCTGCCAAATGCTCAATTTCAGTGGTGGCATTTTCCGCTAACATT
TCTTGCATGTATTCCAAACTGACACTGACTGAAAAGGTCACCTTTGATAACGGTACCAGA
AATCTTACGGCCTCAGATCTGCCATGTCAAGATAACATTTGGGTCAGGACTATGACCTAC
GGCGAAACGCAAGTCCCGTTTTGGGAAACCCGCAAAAGCATAATTTTTTTCACTGTGCAA
CGGGAAGAAGTAAAGAACGCCTCACGTGTAAGCAAACGTGATGTTAAACAACGGGACGTG
GATGCGTCTGAAGACGAGGGATTCTTCAACGACACCATGTTCCTGCTGTTCGATCAGTTG
TCCAGAAAAGAGATGTCAAAAGAGGAGGAATCCGACTGGAACTGGGAGAAGGCACACTAT
CTCATGACGGACACCGACTCGGGCCAATATTTCTACTTGAATTCGTCCAACAGGCCTCCG
AGCGAGCCGCAATATTGCATTTTAGGAGATAATGCTATGTGCCCGAGCGGTTACAAGTGC
CAAGAAGCAGGCGGCAACCCGGATTTCGGCTACACCAATTTCGACCAGTTCTTTTGGGCC
TTCCTCACGTCGTTTCGTTTAATTGCGCAGGATGCGTGGAGCAGACTTTATTACCTGACG
CTTCACACGATCGGAAAGACATACGTCATCTACTACATCATTATCATGTTTCTCGGATCC
TACTATCTCATAAACCTCATACTGGCTGTCGTTTATATGGCGTATGAAGAACAACAAGCC
GTTTCGGACGAAGAGGAGATAATCGATGCTAAAGAGGGAGCTGTTGCAGAGGAGGAAATT
CTTGGGAGCAGAACGAGTTTGAAAAGCGGACCGCTGGAGAGTCGCCATTGTGACCTTATA
ACGACATCTCTCACTTCAATCACCGATTCCTTACCCCGGAGTCGATACGGAGGGAGTAGG
AGGTCTAGATATGGCCAACGGAGGACTCCAAAACCAGATCCAGTATCAGATCACTTGTAT
CATAAATTTACTCTTCGACATGGGGATGGGATATCTAATGAAAATCTAGAAAATCTTTCG
TGCGATTTGGAATCGGAGGAAGGGAAATGTCATCCCTGGAGATGGAGGAGCAGGAGGAGT
TCCTATGCCAGTGATCTCTCACACACTATGTCGATACGTAGCGTATGCACGCGCTGTAAT
TCAAAGGATGATCTAAGTCACCGATTGCAGTTCCCTTCACATGGTCGAAGGAGATGCAGT
CGAAGCATGTGCGAGGATTCCTGTTCTGACCTTCCTATGTCAACTCATGTATTCAATCCC
GTGGTTTCGAACACTACGGAATCAGGACCCACAGAAAAAGATGGTCAGATCTCTATTCCA
GTTCCTATAATACTGAAGCAAAAGTATTCAAAATTGGACGTGTTACCGGTTGAATATTCT
CGAGGGAGATCCAATTCCGTGTGCAGTTCCATCAGCGAAAGCGGTACATTTAGCATTGCC
GTGCCATACTACTGCCAGGAGTGTAGGAAAAAGCGAAAGTGTAGAATGTCTAGTTCATCT
TCAGGACAAAGCACTGTCTTGTTGGATGCTTCTTCTTTGCGTCAGAAATCAGAATCCAGA
GATCCTAACGAAGACTCGACCTTCTTGCCAATACCCATTGATCGGGCAAATCGTCTGAGT
TCTTCCTCATCTGCTAGCTTCGATGCCGAGGAGCAGGTTGTGCAAGCGGAAATATCTCAC
ACTTCTCACTGGCTCACACCACCATCCGGTGGTTCCATCGCCTCAAGCAAAAATGCTGAA
TTAGGATCGTGTAACGCGTTATCAACCTTGTCCCAACGTAGAGATTCTACTCTGCCCACC
TATGGCATGTCTCTAACCAGTTCTCCACCTCTTCAAGTTCCTTGTCTCCTAATAACCTCC
GCATCTTCGGAGCACATTTCGAGCTTGTCAAAGGAAGCTTCGGAATCTAGTCTTGTCAAC
ACTGATAAACTTTTGAAGGAAAAGTCCCCTGATCTGGTTTGTAACACACTGGAATGGGGG
GTAACACACGAGGAAGAAATCATACCCAAAAAAAAACTGGACGTATTTTTACCTGGCGTC
AGTGAGACAGGTGACAGCAGTTGTGCTGCGTTTAAGAGACGTCAGTGGCGAGATCAGATA
AATAGTTTCTCAAATGTGGAGAATGAAGAAGCTCCCTTGTGTAACATTAGAGAAGTTTGC
GGCGAAGACTTAGGATCACCGACCACGATGTTCTCCAGTCGAAGCCAGTCTCAAAACTTC
AGTCAATATGATGCAGCTGCTGCCTTTCGGGCTGTTGCATTTAATGAAGATGTAGAATCT
TATGAGATGCCTTTAATGGACGGAGTTCAAAATGGAGAAACGCAACACGATCAAGAATTA
CAAGTTGTTACTCATCACGAATGCTCAGAAAAGAAAAGCAGACCTTTCAAACGCATGGTT
CAGCATAACTACAACGGTTTTAAACGAGCTGTTACAAATGTCTTCTGCAAATGGAGCTGT
TGTCCGAGTTGCTGGCAGCCTTTTCAAGCCAATATGAAAATATTTGTATTAGATCCTTTC
ATGGATCTGTTCATAACATTATGCATCTTGTTAAACACTCTATCCATGACAATAGAGCAG
CATCCTATGGAGCAATGGTTCCAGAACATGTTAGAGCAAGCTAATTTGGCATTCACGATC
ATATTCGCGCTCGAGATGTTTCTGAAGATCATTGGTATGGGACCTCATACGTATTTTAAA
GAAACATGGAACCTGTTTGACGCTGTGATCGTAATATCTAGTCTACTGGAGCTTTTGTTG
CAGTCGATTCAAGGGATTTCTGTCTTGAGAACCTTTCGATTGCTAAGAATTCTTAAGCTT
GCTAAATCGTGGCCAACGCTTAACAAGTTGTTACGAATCATTGGTCGAACCTTAGGGAAG
CTCTGGCATTTGACGATAGTGTTTCTGCTTGTGCTTTTCATATTTGCTGTCGTAGGAATG
CAGTTACTCAGAGAAAAATACGTGGAAGAATATCATGACAACATGCCAAGGTGGAACTTT
GTTGACTTTCAGCATTCGTTCATGGTTGTGTTTCGTATCCAATGTGGAGAATGGATCGAG
AATATGTTCGCGTGTATGAACATTGCTCACCCTGGCATATGCATACCGCTATTCGTTCTC
GTTTATATTATTGGAAACCTGGTGATATTGAATTTATTTTTGGCGCTCTTGCTAAATTCT
TTTTGCGGTGACGCACTCCAGAGAATTGACAGCGAAAGGAACAGTATAGCTGAGGCCATG
GTCAGGATAAGAAGGTGGTCAAGGAAGTGTCGTAAATTCCTGCGTTCTTGTAATGTCATA
ATGCATTGCTGCAACAAAATACAGCTGCAGCTATCGCTGAGAAAAAAGACATCGTGCAAC
GAGCCAAAAATAAAACCCATCGCAATGAAGAAGAAGATGAAAAACGGGAATGGTTCGACT
GACTTGCCTATGGATCCGGCATCTACTGGAACTACTTTCTTAAACGAGGACGTGCATTCC
TCGAATAATACCTCCAAGAGAGATCCTGATCCTGATCCTGTCATCAGTTGCAAAGCTGTT
GACAAGCAGCCTGGTACTCACAATGAAAATTCAACCAAACCACTCAATGGTGACAAACCT
GTGACTACTACTTTGCCTGATTTACTGGACAATAATAATCATACTGTACAGAAGAACGAT
ACTGAAAACGAAAATGATGATCATGGGCACCACCAGCACCACCATCAACAACAACACCAT
CACCACCATCACTCACACAGTCATCATCGCAGTAACACACGAAGACGAAACAGCAGGTGC
TACATAGATCATAATTCCCTTCGACAAGGATCAGATGAAAAAGACTCTCCATGCCACAAA
ATACACAGACCCAGGAATGAGGAAGCAAGGCATCACAAACACCATGTCGTCCGGTGTCAT
GGATGCAACACACAAATAATGCCTAAGTCCCCCGAGCGAAGGCTGCCCAGGAGACGAATA
AAAGAGGGATTCGCCCCGGCTTCCGAATTTCAAAACGATACATTCAATGAAAACAAAGTT
GACCCTTCAAACAGGGACGACGAAGAGACTTCACCCATGATCCAGCAAGAGGACACTAAC
ATACCTGCATCCCGTTCCAGGTTCCCGGCTTACGACAGCATCGAATATACTAGAACTCCC
TCTTGCGAACGAGAAATACTTGGCCAGAAACGCAGCAGCAAGCGAAACCGAAAATCGAAG
AGTGTTGAAGAAAGTATAGATGAAGTAGTTGGTCGTTCTAGAAATACTAAACGAGATAGC
TGGAAACAGGGGCAAGCCTCGTCATTGCCGTTATCGAGGAAGAACTCCCCGATCCCTGCT
CCAGCCATGCTTGACGTATCGACTGCTGCAGGAAAATTACTAAAGTATAAAGGTGCAGAA
GAAAGCGACGTACCCCTACGCGGTTCCGTTCACAGCAGCCGGCCCCCAAGCATCAAAAAT
GGCAGCACAGCGAACGGGGGAATCCTACGTCGAAAGAGCACTGCCAGCGTTTCAGTGCGA
TATCATTCGGGAAGAGCAAGTATAAGCAGCGTCAAATCAAATTACTCATCTATTAGGAGT
CACAAGCCACTGAGCAATGCCTCAAGTGCTGCTGAACTAGGAGCAGCAGCGACAGAAGAA
ACTGAAACGAAGGAAGAAATACGAGAATGCATGCCACTGTGTTTCAACGAACCGAAGGAC
GGAGATTGGTGGAAAATAAGAAAGTTTTTTTATGATGTGGTGAACCATCCTTATTTTGAA
AACCTCGTCATATTCTGTATCTTGTTAAGCAGTATTGCACTGGCCTTTGAAGACATCCAT
TTGAATTCACGTCCCACCATGAAGAGGGTTCTGGAAGTACTGGACATCATTTTCTGCATT
TTTTTCACCGTCGAGATGTTGCTGAAGTGGATTGGTCACGGTCTCAAATATTACTTCACC
AACGCTTGGTGTCTACTCGATTTTGTTATTGTTTTTGTTTCATTGTTGAACTTATCAATG
TCTAAGAGCGACTTGGGATCATTACGAGTACTTCGAACATTCAGGGCACTCAGGCCTCTA
AGGGCTTTGTCTAGATTTCAAGGAATGAAGGTTGTGGTCGACGCTTTAATGCGAGCTATA
CCTTCGATAGCGCACGTATTTTTGGTCTGTGTGATAGTATGGCTGATTTTCAGTATTCTC
GGCGTCAATCTTTTCGCCGGTCGATTCGGTCGTTGCGTCTTGTTAACCGGTGACACCGGA
ATAATCCTGCCTCGTCCTCCCGACGACGCGAACGAAACTTTTGTGTCAGCTAATATAAAC
GAGTTGTGTAATCCAAACATCACTTTGCCTCTACGGGAATCACAAATGCCGCAAATCGCC
AATAAACAAAATTGCACGGAATGTGGAGAACTGACACTGATTCAGTGGGTCATACCAAGC
ATCAACTTTGACAACGTTTTTCAAGGATTACTCGCTCTCATGCAGGTTGCGACATTCAAA
GGATGGCTGGAAATTATGAACAACGCGATAGATATCCGAGGAATTGAGGTACAACCATCG
TACGAATACTCTTTCCACAACTATCTTTATTTCTGCATATTCATCGTGTTCGGTGCTTTT
TTCTCACTCAATCTCTTCATCGGTGTCATTATAGACAATTTCAATCAGCAGAAGGTGAAG
TGCGCAGGCGGTGAAGATGGCGTATTCTTGACTGATGAACAAAGACGATATTATAACGCT
ATGAAAAAAATGGCCGCGAAGACTCCGAAGAAGCCCATACCGAGGCCAACATCTCGTGTG
GCAAATAAGATCTACGACCTCGTCACAAGTAGAAAATTTGAAATCATAGTCATGGCGATG
ATTCTCCTCAACATGGTGGTGATGGCACTCGAACATTACGACATGAGTCCGAGAATGGAT
CTGATACTGGAAAATTTTAATTTCGTTTTCATAGGTATATTCACTGTTGAAGCTATTTTG
AAGTTGATCGGACTTCGTCAATATTACTTTACGATACCTTGGAACGTCTTTGACATAATT
GTCGTTGTTGTGTCAGTTATAGGTAAGTTAATTCGCCGCTTCGTCAGAGGCACTGGTGAT
TTATATTGTTTGAAACATAACAACTCGATCAATAATAATATTACGCTATTTTACTGTACT
ATATTTTTTGTGTACTCGGCCAAAGCATGA

InterProScan

Gene3D
Volt_channel_dom_sf (IPR027359) - T[197-316] 1.1E-22 - T[1430-1546] 1.5E-31 - T[2166-2284] 2.4E-31 - T[2520-2625] 4.7E-28
Pfam
Ion_trans_dom (IPR005821) - T[206-436] 2.6E-46 - T[728-840] 1.2E-22 - T[1439-1661] 1.2E-51 - T[2176-2479] 6.0E-62 - T[2532-2609] 1.6E-15

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SCN2A_HUMAN 46.704 % 463 2.32E-132
SCN3A_HUMAN 48.276 % 464 1.07E-132
SCN5A_HUMAN 49.485 % 470 1.35E-134