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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S201.g00031.01.t

Possible name(s)

CHRNA1; CHRNA3; CHRNA6

Gene model

Harore.CG.MTP2014.S201.g00031

Location

S201 [151,681 / 153,729]

Sequences

Amino acid sequence

Length: 225

>Harore.CG.MTP2014.S201.g00031.01.p
MTLSVSLLLSLVVFLLVIVEAIPSTAKGVPLLGQYILFTMILVTLSIIITVFVLNIHYRT
PSTHTMPDWVKKVFIVWLPRIMFSSTIKRMDPFAEKEIADSKKNFYNDISAENYIDLFYF
TFKEISGKTHTREQPFLLNPDAKLAIDGVQLMAEHFKDEEESFKVWYGIVYNNTLFRVFS
HGYSSQDLSPFKFECQVKPFYFTDSSQFRHLSHFGKSRVTHYCPG

Nucleotide sequence

Length: 678

>Harore.CG.MTP2014.S201.g00031.01.t
ATGACGCTCAGTGTATCTTTACTGCTTTCTCTGGTTGTGTTTCTCCTAGTTATCGTTGAA
GCAATCCCATCAACCGCTAAGGGTGTACCTTTACTTGGCCAGTATATCCTGTTCACTATG
ATTTTAGTCACATTATCGATCATCATAACAGTCTTTGTACTGAACATTCATTATCGGACA
CCATCGACTCACACCATGCCAGACTGGGTGAAAAAGGTCTTTATTGTCTGGCTTCCTCGT
ATCATGTTCAGTTCCACCATAAAGAGAATGGATCCGTTTGCGGAAAAGGAAATAGCCGAC
TCTAAAAAGAATTTTTATAACGATATTTCAGCGGAAAATTACATAGACCTTTTTTACTTT
ACTTTTAAAGAAATCTCTGGAAAAACGCATACGAGAGAGCAGCCTTTTCTACTAAATCCT
GATGCGAAATTGGCTATCGACGGAGTGCAGTTGATGGCGGAACATTTTAAAGACGAAGAA
GAAAGTTTCAAGGTATGGTATGGTATAGTATACAATAATACTTTATTTCGAGTATTTTCT
CACGGATATTCCTCCCAAGATTTAAGTCCTTTCAAGTTCGAGTGTCAAGTCAAACCATTT
TATTTCACTGATTCAAGTCAATTCAGGCATTTAAGTCATTTCGGCAAGAGTCGAGTAACG
CATTACTGCCCTGGATAA

InterProScan

Pfam
Neurotrans-gated_channel_TM (IPR006029) - T[1-165] 2.2E-34
SUPERFAMILY
Neuro-gated_channel_TM_sf (IPR036719) - T[1-169] 1.01E-35
PANTHER
Neur_channel (IPR006201) - T[2-109] 3.7E-43

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ACHA3_HUMAN 39.583 % 127 3.47E-34
ACHA6_HUMAN 68.675 % 117 8.51E-31
ACHA_HUMAN 50.602 % 128 1.06E-34