- Transcript 'KH2012:KH.C1.274.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'KH2012:KH.L18.18.v4....' >
- Transcript 'KH2012:KH.L170.28.v3...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S205.g09921.01.t
Possible name(s)
SCN2A; SCN3A; SCN9A
Gene model
Location
S205 [36,467 / 45,546]
Amino acid sequence
Length: 1,563
>Harore.CG.MTP2014.S205.g09921.01.p
MVVIFLGSFYLINLILAVVAMAYEEQHQLVAMEEERKTALMQKKREEIDALLTEVHDAEM
KLESRRASVVCTDSSPASSAGSLLSMYRRKSLVINVESGRACGRQTSVKSISKAGHHNGN
LTKTPFSDILIGTETISVDSKTSSVSFSLKNEAPPTGRRQTNPQIPEIVVNSFTSPHTPS
QEFDGEELSKRIQEELNRQRSQPQFQSKFTNLDGHYNSGTVVDRNGAVTLAQTTEHPTGG
PHISVLLPEVIIESAHDSEAGRSSPDCEMICMDSLKPYSRSRATSIDLLGEPELAMLKKR
AMSQASIMTAELDRQDRKCSPCWYKFTNIFCIWNCCGAWNYIHKICKIICEDPFLDLFIT
ICIIVNTAFMTAEYQPMEESYARILEVANLVFTVIFTAEMVLKVVGMQPFQYFQDPWNCF
DSVIVSFSLLEYALQSVGGLSVLRTFRLMRVFKLAKSWPTLNMLIKIIGNSMGSLGNLTL
ILIIVLFIFAVVGMQLFRERYKEAELAGNLNMRWHMKDFGHSFLIVFRILCGEWIETMWD
CLRWGGDIRGLCVPVFLLVQVVGNLVVLNLFLALLLSSFLADNFVNEEEEPNAIQLSMIR
VNKFLAIAKVKVNAAKATLLESCRKKLVIGLDSKLMTQPHCNDINRDRMANTGNGLADGQ
KIVYNAPINQNEKPMTEKPKICFETTESVPIKHRKSNTLAVTWSPSKMKVPRADGESDFE
VPDSDEQSLDDESDYMSSVRSSRSGTLSMDSRSDFEGVETSLPEKNTEEEEDVPSPCWPD
KWKERVACCDPVVDEGLCLVWWNMRKICYRIIEHAWFESFIILMIMLSSGALAFEDVYLK
DKIGLQRVLKYADRIFTYVFIFEMLLKWVGYGFKKYFTNAWCWLDFLIVGVSLISLIAEA
LGMDQIGSIRSLRTLRALRPLRAMSRFEGMKVVVNALVGAIPSIFNVLLVCLIFWLIFSI
MGVNFFAGKFRKCLNTTSGISLPAENFTLYGVTYPEINSTVCKYIHENVTQDIMWRNSKI
NFDNAFSGYLALLQVATYKGWMEIMYDAVDVTYTNKQPKFENSVGYYFYFVAFILFGSFF
TLNLFIGVIIDNFSQQKKKLGGQDIFMTEEQRKYYNAMKKLGSKQPQKPVPRPKNELQAW
VFDIVVHQTFEIAIMILIVTNMFTMMIEYHDMPKNLMDVLEYINYVFIAIFTGECLLKPT
LFRIIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIALLLVLVMFIYSIFGMSQFA
YVHRGDGIDDIFNFETFPNSFLCLFMITTSAGWAGLLSPIMDSDAPDCNILLQNDNPNGR
GDCGNPKIGIIFFVTYLIMTFLIVVNMYIAIILENFGVATEESADPLGEDDFEMFYEIWE
RFDPKATQFIAYEHLSDFVDNLDLPLKVPKPNFDTLIAMDLPMVMGDRLHCLDVLFALTK
RVLGESDALEGLRSQMEDKFMEANPSKVSYEPITTTLRRKQEEMSAVIIQRSWRRYRIRH
AVHTASRLFLGLNLLHDDPFENSTQETVNNDSLHPDFLHQDATSSNYDRRTSAGFLAEEN
TYS
Nucleotide sequence
Length: 4,692
>Harore.CG.MTP2014.S205.g09921.01.t
ATGGTGGTCATATTTCTCGGGTCTTTCTATCTCATCAACCTTATCCTGGCTGTCGTAGCT
ATGGCATACGAAGAGCAACATCAGTTGGTGGCGATGGAAGAAGAGCGAAAAACAGCGCTT
ATGCAAAAGAAAAGGGAAGAAATAGATGCGCTTCTAACGGAGGTTCACGACGCTGAAATG
AAATTAGAGAGCAGGAGAGCCAGTGTGGTATGCACAGATTCTTCGCCAGCGTCGTCTGCA
GGATCTCTGCTTTCGATGTACCGTCGTAAAAGCTTAGTAATTAATGTAGAGAGTGGCAGA
GCATGCGGGCGGCAAACAAGTGTAAAGTCTATTAGCAAGGCTGGTCACCACAATGGAAAT
TTAACCAAGACACCGTTTAGTGACATTCTAATTGGAACGGAAACAATAAGTGTTGATAGT
AAGACTTCATCTGTCAGTTTTTCTCTTAAAAATGAAGCTCCCCCGACTGGCAGGCGACAA
ACAAATCCACAAATTCCCGAGATAGTCGTGAATTCGTTCACTTCTCCGCACACGCCCTCC
CAAGAATTTGACGGAGAAGAACTTTCGAAGAGAATTCAGGAGGAACTGAATCGTCAAAGA
AGTCAACCGCAATTTCAATCAAAATTCACTAATTTAGACGGTCATTACAATTCAGGAACA
GTGGTGGATCGGAATGGAGCTGTTACATTAGCGCAGACTACTGAACATCCTACTGGCGGT
CCTCATATTTCTGTGCTTCTACCTGAGGTTATTATAGAATCAGCACACGATTCGGAAGCC
GGAAGGTCGTCACCCGATTGCGAAATGATATGCATGGATAGCCTGAAGCCTTATTCACGT
TCCCGTGCAACATCCATAGATTTGTTGGGTGAGCCAGAGCTAGCAATGCTAAAAAAGAGA
GCTATGAGTCAGGCGTCTATTATGACAGCAGAACTAGACAGACAGGACAGAAAATGCAGT
CCATGCTGGTACAAATTTACAAATATCTTCTGCATATGGAATTGTTGCGGTGCTTGGAAT
TATATCCACAAAATTTGCAAAATTATATGCGAAGATCCCTTCCTGGATTTGTTCATAACG
ATATGTATAATTGTCAACACTGCCTTCATGACAGCAGAATACCAACCAATGGAGGAGTCA
TACGCGAGAATTCTGGAGGTTGCAAATCTGGTTTTCACGGTTATATTTACTGCGGAAATG
GTTTTAAAAGTAGTAGGGATGCAACCCTTCCAATACTTTCAAGACCCATGGAATTGCTTC
GATTCTGTCATTGTATCGTTTTCTCTCCTTGAATATGCACTACAATCGGTGGGAGGACTT
TCTGTACTGCGCACCTTTCGTCTGATGAGGGTATTCAAGCTTGCAAAGTCGTGGCCGACT
CTGAACATGTTGATCAAAATTATTGGAAATTCGATGGGATCTTTGGGAAATCTTACTTTG
ATTTTGATTATCGTATTATTCATATTTGCTGTAGTCGGAATGCAACTGTTTAGGGAGAGA
TACAAGGAAGCCGAGTTAGCTGGGAATCTCAATATGCGGTGGCACATGAAAGATTTTGGT
CATTCGTTTTTGATTGTGTTTCGCATATTGTGCGGTGAATGGATTGAAACCATGTGGGAT
TGCTTGAGATGGGGAGGCGATATACGTGGTTTATGCGTTCCAGTATTCTTGTTGGTACAA
GTTGTTGGAAATCTGGTGGTACTAAATCTATTCCTTGCTTTGCTGTTGAGTTCGTTTCTC
GCGGATAATTTTGTGAATGAGGAGGAGGAACCAAATGCTATTCAGTTGTCAATGATACGA
GTGAATAAATTCTTAGCAATAGCAAAAGTAAAAGTAAATGCGGCGAAGGCGACCTTACTG
GAGTCGTGCAGGAAAAAGCTTGTGATTGGACTGGACAGTAAGCTGATGACACAACCTCAC
TGTAACGATATCAATAGAGATCGCATGGCAAATACGGGGAATGGATTGGCTGACGGACAA
AAAATTGTTTATAATGCACCGATCAATCAAAACGAAAAACCAATGACGGAGAAGCCTAAA
ATTTGTTTTGAAACTACTGAAAGCGTACCTATTAAACATCGCAAGTCCAACACTCTAGCT
GTAACGTGGTCACCGAGCAAAATGAAAGTTCCAAGAGCTGACGGGGAATCTGATTTCGAA
GTACCAGACAGTGACGAACAGTCCCTTGACGATGAGAGTGATTACATGTCGAGTGTAAGA
AGTTCCAGAAGTGGTACTCTATCTATGGATTCAAGATCAGACTTCGAGGGTGTAGAAACA
TCTTTACCAGAAAAAAATACCGAGGAAGAGGAAGATGTACCATCTCCATGCTGGCCTGAT
AAATGGAAAGAAAGAGTGGCTTGTTGCGATCCCGTTGTTGACGAAGGATTATGTTTAGTG
TGGTGGAACATGCGTAAAATATGCTATCGCATTATAGAACACGCTTGGTTCGAAAGTTTC
ATTATTTTGATGATCATGCTTAGCAGTGGAGCTCTGGCATTTGAAGACGTGTATTTGAAA
GACAAAATAGGCCTTCAACGCGTTCTCAAATACGCAGATCGAATCTTTACTTACGTCTTT
ATATTCGAGATGCTGCTGAAGTGGGTTGGCTATGGTTTTAAAAAATACTTCACAAATGCG
TGGTGTTGGCTGGACTTTCTGATTGTTGGGGTGTCACTGATAAGCCTTATTGCTGAAGCG
TTGGGCATGGATCAGATTGGTAGCATAAGATCACTGCGAACCTTGAGAGCACTGAGACCA
CTACGGGCCATGTCAAGATTCGAGGGAATGAAGGTAGTAGTGAACGCCCTAGTCGGAGCT
ATTCCATCAATCTTCAATGTGCTCTTGGTGTGCCTCATTTTCTGGCTAATATTTTCGATC
ATGGGTGTTAATTTCTTCGCGGGAAAGTTCCGAAAATGTCTCAACACAACGTCAGGGATA
TCATTACCTGCAGAGAATTTCACCCTATACGGTGTCACTTACCCAGAGATTAACAGTACC
GTTTGTAAATATATACATGAAAACGTAACACAAGATATCATGTGGAGGAACAGCAAAATA
AACTTTGATAATGCTTTTTCCGGATATCTCGCCCTGCTACAGGTTGCGACATACAAGGGC
TGGATGGAGATAATGTACGATGCAGTGGATGTGACATATACTAACAAACAACCCAAATTT
GAGAATAGTGTTGGATATTATTTTTACTTCGTCGCATTTATCCTGTTTGGAAGCTTCTTC
ACTCTGAATCTATTTATTGGTGTCATTATTGATAACTTCAGTCAGCAAAAGAAGAAACTT
GGCGGACAAGACATCTTCATGACTGAAGAACAAAGGAAATACTACAATGCAATGAAAAAA
CTAGGGTCAAAACAGCCACAAAAGCCTGTCCCAAGACCAAAAAATGAACTACAAGCATGG
GTATTCGACATAGTAGTCCATCAAACATTTGAAATCGCCATCATGATTCTGATTGTGACT
AACATGTTCACAATGATGATAGAATATCACGATATGCCTAAAAATCTGATGGATGTCTTG
GAATATATAAATTATGTATTCATTGCTATATTTACCGGAGAATGTTTGCTAAAGCCCACA
TTGTTTCGGATCATTCGTTTGGCTCGAATTGGTCGTATTTTAAGACTCATTCGAGGAGCA
AAGGGAATTCGTACACTTCTCTTCGCCCTGATGATGTCACTTCCAGCTCTCTTCAACATT
GCTCTGTTGCTTGTGCTTGTAATGTTTATTTACTCCATATTCGGTATGTCTCAATTTGCA
TACGTTCATCGTGGCGATGGAATTGATGATATTTTCAATTTTGAAACGTTTCCGAATTCT
TTTCTGTGTCTGTTTATGATAACAACTTCTGCAGGCTGGGCTGGTTTGCTGAGCCCTATA
ATGGATTCTGATGCGCCGGATTGTAATATTCTTTTGCAAAATGACAATCCTAACGGTAGA
GGGGATTGTGGCAATCCGAAGATAGGAATCATTTTCTTCGTCACGTATCTAATAATGACC
TTCCTTATCGTCGTGAATATGTATATAGCCATTATACTTGAAAATTTTGGTGTTGCTACT
GAAGAAAGTGCTGATCCTTTAGGAGAAGATGATTTTGAGATGTTCTATGAAATCTGGGAG
CGATTTGATCCGAAAGCAACCCAGTTCATTGCATATGAACATTTATCAGACTTTGTGGAC
AACCTAGATTTACCTCTTAAAGTTCCTAAGCCTAATTTCGACACGTTGATAGCAATGGAC
CTTCCGATGGTGATGGGCGATCGTTTACATTGCTTAGATGTTCTTTTTGCTTTAACTAAA
CGCGTGTTGGGTGAGTCGGATGCGCTGGAAGGCCTTCGTTCCCAAATGGAAGACAAATTC
ATGGAAGCAAATCCATCGAAAGTATCTTACGAACCAATCACAACGACATTACGTCGTAAG
CAAGAAGAAATGTCTGCTGTTATCATTCAAAGATCTTGGAGACGCTATCGCATTCGTCAC
GCGGTTCATACGGCGTCTCGTCTATTTCTCGGTCTAAATTTATTACATGATGATCCGTTT
GAAAATAGCACTCAAGAAACCGTAAATAACGACAGCTTGCATCCGGATTTCTTACACCAG
GATGCGACCAGTAGCAACTATGATAGAAGAACTAGCGCGGGCTTTCTAGCAGAGGAAAAT
ACGTACAGTTAG
| Gene3D |
Volt_channel_dom_sf (IPR027359) - T[342-463] 1.7E-32 - T[805-928] 6.4E-29 - T[1138-1201] 6.3E-14 |
| Pfam |
Ion_trans_dom (IPR005821) - T[353-579] 1.8E-54 - T[814-1099] 8.8E-65 - T[1147-1198] 1.7E-8 - T[1200-1363] 1.3E-32 |
| Pfam |
Na_trans_assoc (IPR010526) - T[590-810] 2.6E-16 |
| PRINTS |
Na_channel_asu (IPR001696) - T[1335-1354] 2.5E-12 - T[1370-1383] 2.5E-12 |
| SMART |
IQ_motif_EF-hand-BS (IPR000048) - T[1481-1503] 0.0058 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SCN2A_HUMAN | 49.842 % | 1390 | 0 |
| SCN3A_HUMAN | 49.875 % | 1369 | 0 |
| SCN9A_HUMAN | 53.437 % | 1386 | 0 |