- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S224.g10603.01.t
Possible name(s)
POU4F1; POU4F2; POU4F3
Gene model
Location
S224 [118,859 / 123,024]
Amino acid sequence
Length: 418
>Harore.CG.MTP2014.S224.g10603.01.p
MLTHHHHHRPGSPLGATSASSINGSPLSSNSPPEQKYAPLHNAADAMRRHCMPSPVTYSS
NLFAGFDESFLARAEALAAVDYTGKNQFKTDSSVSGYYPMSAPPPHHMGPQSHLGGVPMG
PGAVPPPPVYGTMPPPHSLHHPSALHSMPQCVTQGPLSIADSGADLMEQLSNPTHCSSFS
SYQPPSFTSSSVMMPTTEGMSFSVAAAAVASQPHYMSSMPNTHPGGVSVSAFNAQPPSSI
SFHPGAAMATPSTVPSDSHLQHGTACSPPNHPSLPVGDFDTDPRELEAFAERFKQRRIKL
GVTQCDVGQALAKLKLPGVGSLSQSTICRFESLTLSHNNMVALKPILMTWLDQAEAEYRR
KMEDSGLAEKKRKRTSIAAPEKRSLEAYFSLQPRPSSEKIAAIADKLDLKKNVVRVWF
Nucleotide sequence
Length: 1,428
>Harore.CG.MTP2014.S224.g10603.01.t
ATGCTGACACACCACCACCATCACAGGCCCGGATCCCCACTCGGCGCAACCTCCGCCTCG
TCGATAAATGGATCCCCGCTGAGCTCGAATTCTCCGCCCGAGCAAAAATACGCTCCATTA
CATAATGCAGCCGATGCGATGCGCCGACATTGCATGCCCTCGCCGGTAACGTATTCGAGC
AATTTGTTCGCTGGCTTTGACGAATCCTTTTTAGCCCGCGCTGAAGCATTGGCTGCAGTG
GATTATACCGGAAAGAATCAGTTCAAGACAGATTCGTCAGTGTCTGGCTATTATCCTATG
AGTGCACCTCCCCCACATCATATGGGCCCACAGTCTCACCTCGGGGGTGTACCTATGGGT
CCTGGCGCGGTACCACCTCCTCCAGTATACGGAACCATGCCACCGCCACATAGCCTGCAC
CATCCTTCAGCTCTACACAGCATGCCCCAATGCGTTACGCAGGGACCACTGAGTATAGCG
GATTCTGGAGCAGATCTTATGGAACAGTTAAGCAACCCGACTCACTGCTCTTCGTTCTCA
TCGTACCAGCCGCCTTCATTTACATCATCATCGGTAATGATGCCAACTACAGAAGGTATG
TCGTTCTCTGTGGCAGCAGCGGCAGTCGCATCTCAGCCCCACTACATGTCTAGCATGCCA
AACACGCATCCAGGTGGAGTATCTGTATCCGCCTTTAACGCCCAGCCACCAAGTTCAATC
TCTTTCCATCCTGGCGCAGCTATGGCAACACCTTCAACGGTACCATCGGATTCACATTTA
CAACACGGTACAGCCTGCTCTCCGCCCAACCATCCTTCGTTGCCTGTTGGAGATTTCGAT
ACAGACCCGCGCGAGTTGGAGGCATTCGCCGAAAGATTCAAACAACGAAGAATAAAGCTT
GGAGTTACACAATGTGATGTCGGGCAAGCTCTTGCGAAATTAAAGCTCCCAGGCGTTGGT
TCATTAAGTCAAAGCACAATCTGCAGGTTCGAATCTCTCACACTCAGTCACAACAACATG
GTCGCACTGAAACCTATTTTAATGACGTGGCTGGACCAGGCCGAGGCCGAATACAGACGG
AAAATGGAAGATTCAGGACTGGCGGAAAAGAAACGAAAACGCACGTCCATTGCAGCTCCA
GAAAAACGATCTTTAGAAGCCTACTTTTCCTTACAGCCGAGACCATCATCGGAGAAAATA
GCTGCTATTGCAGACAAATTGGATTTAAAAAAGAATGTTGTTCGAGTATGGTTTTGAAAA
CATCATGTAAGCCAAGAAAAACTTTTCAATTCCTGCACACGGAATTCAATGAAAATCAGC
ACAACATGCGATAGACATCCGCGAACGGTGAAAAGCATGCAAGCTAAGAGATACATCAAT
AACTCTAATACGAGCAAGCTTTGCTGGACAAACACGACTCGAAAATAA
| ProSiteProfiles |
POU_dom (IPR000327) - T[278-355] 46.536 |
| SMART |
POU_dom (IPR000327) - T[278-355] 9.8E-49 |
| SUPERFAMILY |
Lambda_DNA-bd_dom_sf (IPR010982) - T[278-355] 4.61E-20 |
| Pfam |
POU_dom (IPR000327) - T[283-355] 3.6E-29 |
| ProSitePatterns |
POU_dom (IPR000327) - T[296-308] . - T[323-336] . |
| PRINTS |
POU (IPR013847) - T[297-314] 3.9E-33 - T[323-336] 3.9E-33 - T[339-354] 3.9E-33 - T[369-389] 3.9E-33 - T[404-418] 3.9E-33 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[368-418] 2.78E-9 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[368-418] 13.604 |
| SMART |
Homeobox_dom (IPR001356) - T[370-418] 0.0027 |
| Pfam |
Homeobox_dom (IPR001356) - T[371-418] 8.6E-11 |
| CDD |
Homeobox_dom (IPR001356) - T[371-418] 1.83452E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PO4F2_HUMAN | 69.022 % | 246 | 8.32E-78 |
| PO4F3_HUMAN | 47.315 % | 268 | 4.35E-87 |
| PO4F1_HUMAN | 81.507 % | 244 | 5.38E-77 |