- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S227.g07710.01.t
Possible name(s)
MLH1; PMS1; PMS2
Gene model
Location
S227 [30,187 / 46,684]
Amino acid sequence
Length: 583
>Harore.CG.MTP2014.S227.g07710.01.p
FYKKYIIFSMAGCSNQPIIRRLEESVVNRIAAGEVVQRPANGLKEMLENSLDAGSTSITV
TIKSGGLKMLQISDNGHGIRREDMEIVCERFTTSKLREFNDLRSIATFGFRGKLKAPPRP
TAGNQGTQITVEDLFFNVPARRRALTNFSEEHQKIADVVSRYAIHNSGISMMLRKAGQSN
TAAGNISVRTHVGASVCDNIAAIYGSQIAKDLIEVVHNDEKLQFKVSGYISNANCSSKKF
NFLLFINHRLVDCTSLKRALDTVYQAYLPKGSHPFVYLALEITPCNVDVNVHPTKHEVHF
LHEEEIVESVQKAVDRKLLGCNSSRTFYTQTFLPTAPGVTVTDVIKEKNGKSAENQARIY
EHQMVRTDSKLQKLDAFIMKPSNMSPSSAGILSPSQQFPSEAQSPQLKHPNKNSEEHQEI
CAKYGSPRFYDPKLNSARIAKRRQIKLTSILKLQAEIKSDVQQDLVNLIGDHTWVGCINP
EQALIQHSTKLYLSDTRRLSEELFYQILIFDFGNFGLLKFSQPIPIYDIALLALENGESG
WKPTDGNKEDLAAHIKEFFKQKSEMLSDYFSFDVDEVNIYFVQ
Nucleotide sequence
Length: 3,983
>Harore.CG.MTP2014.S227.g07710.01.t
GTTTTATAAAAAGTATATTATTTTTAGTATGGCAGGTTGTAGCAACCAGCCTATTATTAG
GCGTTTAGAAGAATCTGTGGTTAATAGGATAGCTGCAGGAGAAGTCGTTCAGCGTCCGGC
AAATGGTTTGAAAGAAATGCTCGAGAACAGTCTTGATGCAGGTTCTACATCCATTACTGT
AACGATCAAATCGGGTGGTCTCAAGATGCTTCAAATATCAGACAATGGCCACGGTATTAG
GCGTGAAGATATGGAAATTGTTTGCGAGCGATTTACTACTAGCAAATTACGAGAATTCAA
TGACCTGCGTTCCATTGCCACGTTTGGTTTCCGTGGCAAACTAAAAGCCCCTCCTAGACC
AACTGCTGGGAACCAAGGAACCCAGATAACAGTGGAAGACTTGTTTTTTAACGTCCCTGC
ACGCAGAAGAGCGCTCACTAATTTTTCTGAAGAGCATCAAAAAATTGCTGATGTTGTTAG
CAGGTATGCAATACACAACTCTGGAATATCCATGATGTTACGGAAAGCTGGTCAAAGTAA
CACAGCTGCAGGGAATATCAGTGTTCGTACTCATGTTGGCGCATCTGTTTGTGACAACAT
TGCAGCCATTTATGGTTCTCAGATTGCCAAAGATTTGATTGAAGTAGTCCACAATGATGA
AAAGCTTCAATTCAAGGTCTCCGGATACATCAGTAATGCAAACTGCTCTTCGAAGAAATT
TAACTTCCTTCTTTTCATTAATCATCGCCTGGTGGACTGCACAAGCCTCAAGCGTGCTCT
TGACACCGTCTATCAAGCCTATCTTCCTAAAGGAAGTCACCCATTCGTTTACCTTGCTTT
GGAAATAACCCCTTGCAATGTTGATGTCAATGTTCATCCTACAAAGCATGAGGTGCACTT
TCTACATGAAGAAGAAATAGTAGAATCCGTGCAGAAGGCTGTAGATCGCAAGCTACTCGG
CTGCAATTCATCGAGGACATTTTACACTCAGACATTCCTCCCAACCGCCCCAGGTGTGAC
AGTGACTGATGTTATTAAAGAGAAAAATGGTAAATCAGCAGAAAATCAGGCGAGAATTTA
TGAACATCAGATGGTTAGAACCGATAGCAAACTGCAGAAGCTGGACGCTTTCATTATGAA
ACCATCTAACATGTCACCAAGCAGCGCTGGAATACTATCACCAAGCCAACAGTTTCCAAG
CGAAGCACAGTCACCACAACTCAAACATCCTAATAAGAACAGTGAAGAACATCAAGAAAT
TTGTGCGAAGTATGGCAGTCCTCGTTTTTACGATCCAAAGTTAAATTCTGCCAGGATTGC
GAAAAGAAGGCAGATCAAACTTACGAGTATTCTTAAACTTCAGGCGGAAATCAAAAGCGA
TGTTCAGCAAGATCTCGTCAACCTAATAGGGGATCACACGTGGGTCGGTTGCATAAATCC
AGAACAAGCACTTATTCAGCACAGCACAAAACTGTATCTGAGCGACACAAGAAGACTTTC
TGAAGAATTGTTTTATCAAATATTAATATTTGACTTTGGGAACTTCGGTTTACTGAAATT
TTCGCAACCAATTCCTATCTACGACATTGCTCTACTTGCGCTCGAAAATGGCGAGAGCGG
ATGGAAACCTACAGATGGAAATAAGGAAGATTTGGCTGCACACATAAAGGAATTTTTCAA
ACAAAAATCTGAAATGCTCAGCGATTATTTCTCTTTCGATGTTGATGAGGTGAATATATA
CTTTGTTCAGTAAAAAGGTCAAATTACCGGCATACCCATGCTTCTACCCAATTATGTACC
AGCAATGGAAGGTCTACCCATGTTAGTTCTGCGCCTAACAACGGAAGTTAATTGGGAATC
AGAAAAGGAATGTTTCCAGACCTTTTGTAGAGAATGTGCAAGATTTTACTCCGTGCGCAA
AGGACACATTGACTTGGAGGATGTTTCTCCGAGAGAAGGGTCAAAACTACATGAAAAAGA
TATGAAAGACGACGAAAGTAATTCAAAAGCTGCAAGTGCAAGTTTGGAGAAAAACATGGA
GCTTGAAACTTTGCCGTGCAACAACACCAGCTCATGGAAATGGACTCTGGAACATGTCAT
TTACAGAGCTTTACAGACGTACCTTCTACCCAGTACAAAAATGCTGGATGACGGAACGTT
CTTACAGCTGGCCAATTTACCCGATTTATATAAAGTATTTGAAAGATGTTAATAGACTAG
AAGTTTTTTTTATTCCTTGCACTGCATGGATGTATTTTTGTAATAAACACATGTTAGTAA
CATGATACATCAGTAATATAAGCACATTTTTATTTAATGAGACTTGTTACCTGGGTTGAT
TACATCAGGTTCAAGCAGAGCTATTGTATTCCATTGTATGGATATATATAAAAGACATTT
TCAAATGACTTTACATTATTCTGCTGATACTTGGCGAGCAAGGAGATGGAGAACACAACT
GTGCAAGCGGCTTATTCAAATATTGTACCAACTTTTGATCAACAAATACAACCTTTCAAA
CCTTTTCAAGACTATGAGGCAATTTGTTTTGCTGTTATCTTGATCTTCTTCTGCATATTC
GGACTGTTGGCCAACGGAATAACTATTTTAGCTATTTGGAGCTCACCAAAGCTCAATAAC
AATTGATAGCCTCGGAGTACTCTACCGTCGTACTTGGGGCTTTCGCGAGTGGAAGATATC
GGTGATACTCTGTAAGATCACTCTTGGGCTGGAACTTTGGACAACAGTAACCACTATGCA
ACATGTAGTTGTGTTTTCAATCCTTCGTCTGATATCACTGAAAATGCCAATCAAGTTCAA
ACAAATTACTCCCTTCCACGCAAAGGTCTTGGTTTGCTTCCTATGGTTTGAAACGTTTTT
TGTGGGTTTCCTTCCATTTTTCATTTTTCTCGGAGTCAAACCTGCACCTAAAGACCTAGC
TAAACCATATTGGTATTCCTGTACTATGCAAAGAGATTGGCTTCCGAGCGTGAGACTTTA
TACTAATATTGGATTTCCGATTATGCTCTACACTCCGTTGTTCCTCGTCGTCACCATGTC
ATTCTACATCATATTCCTGATTCTTAGGCGAAGAAAAAACAATCGCTTCAAGAGCCAGGT
TAAGACCGCTGCTACAAAAAGAGAAAACTCCGCTTTACTTCAGCTCAGCGTAGTCGCCTT
CTCCTTTTTGCTCGGTTATATTCCTGACATTGGCTATCGACTCTTCTCTTTAAGTGCTCG
ATCAAGCGGAATCCAAATTAAAAACCATGTTAATTGGTTTCTTTCTCTCATTTCGCACAC
AGTTCTTCGATTCTCTGAATGCCTCAATCCTGTTCTGTATAATTTGGCCTCCAGCAATAT
GAGGGAAGCTACTCGCAGTTTATTGACTGGTTGCCGCAATACTGCTCGCGTTCAGCCGTC
GCGCACTGCTGTTAAAACATTCAATGGGTGATACAAGAAACTCATTAATTTCCTTGTTTA
TTGTGGTCCTTCGTTTCGTAACGCTGTGATAAGAGTCTTTAAAAAACTATTTTGAAGGAA
ATTGTAAATATAGGCTTAATCAGTAGTGGCTCGTCCATAAGAACTACAAGAGCTTCAGTC
CCCCCAGACATGTTAGGTGTATGACAATGTCAATCTCATGTTAGAATGATAAAAATGTAT
TTGTGCTCAGCTCACTTCCTTATTTACGTTGCATGAGGCCGCGATTGTGGTCTAATAAGC
CGTTCTTGCTTCAAATACTTTAATTATCCTCTGACAAACGGTGACAATGTGAAGTGAACT
CAATGAAGTATTTACAAAGTATCAATTTTTTGATAGATGAATGTGTAATGTTGTGTCGTC
CTGCAGTGAGTGAATATAATAGCATTAAGGCAACAATTCAACCTGTCTATTGATCTCTGC
AACGTGAGTTGATATTCCAGGTTTCCAGCGGAAATACAGTACTTTCACTAAACTAAATAA
GCCAAAACTTTCACGACACTAAG
| PANTHER |
DNA_mismatch_repair_MLH1 (IPR011186) - T[18-112] 2.5E-191 - T[112-402] 2.5E-191 - T[411-576] 2.5E-191 |
| Gene3D |
HATPase_C_sf (IPR036890) - T[18-113] 1.0E-37 - T[114-204] 1.7E-15 |
| SUPERFAMILY |
HATPase_C_sf (IPR036890) - T[19-205] 1.7E-37 |
| CDD |
HATPase_C (IPR003594) - T[43-94] 2.49002E-6 |
| SUPERFAMILY |
Ribosomal_S5_D2-typ_fold (IPR020568) - T[184-316] 6.07E-32 |
| SMART |
DNA_mismatch_repair_C (IPR013507) - T[200-319] 3.5E-47 |
| Pfam |
DNA_mismatch_repair_C (IPR013507) - T[200-318] 6.3E-36 |
| Gene3D |
Ribosomal_S5_D2-typ_fold_subgr (IPR014721) - T[205-331] 8.2E-49 |
| Pfam |
Mlh1_C (IPR032189) - T[446-576] 1.4E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PMS2_HUMAN | 28.977 % | 129 | 2.74E-31 |
| PMS1_HUMAN | 22.965 % | 96.7 | 8.79E-21 |
| MLH1_HUMAN | 49.527 % | 599 | 0 |