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  1. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S22.g06179.01.t

Possible name(s)

SNF8

Location

S22 [412,003 / 414,048]

Sequences

Amino acid sequence

Length: 246

>Harore.CG.MTP2014.S22.g06179.01.p
MRRRGVGAGAIAKKKLEDAKYKERGNVLAAQQLQQLSNQLESFHSNLEEFAAKHKQEIRK
SPQFRHQFQQMCAAIGVDPLASGKGFWSEMLGVGDFYYELGIQAIEACIATRSRNGGIMT
LHELLQRLLKSRGKYGQDISREDVITAIKKIKVLGTGFTIIGSGERCMIQSVPGELNMDH
TTVLEQAQKNGGKICCPILEKALSWKQERSELILDHLLREGMCWVDKQSPDKQLWYWFPA
LFNEAD

Nucleotide sequence

Length: 1,446

>Harore.CG.MTP2014.S22.g06179.01.t
TTGGCAACCTGTCCATCATTCATTACTCATCCTCATCCTGCAGAGTTTTGTAGAAGTTGT
GTATTAGTATTATTTGAGTAGAAAATGAGACGCCGCGGTGTAGGAGCAGGTGCTATAGCA
AAGAAAAAACTTGAAGATGCAAAGTATAAAGAAAGAGGCAACGTACTGGCTGCTCAGCAG
CTGCAACAACTTAGCAATCAGCTAGAGTCTTTTCACAGTAATTTGGAAGAGTTTGCCGCC
AAACACAAGCAGGAAATTCGAAAAAGTCCACAGTTCAGACATCAGTTTCAACAAATGTGT
GCTGCAATCGGTGTTGACCCGCTAGCCTCTGGAAAAGGATTCTGGTCTGAAATGTTAGGC
GTGGGAGATTTCTATTATGAACTTGGCATTCAGGCTATAGAGGCTTGTATTGCAACACGA
TCAAGGAATGGTGGAATAATGACATTGCATGAATTACTACAGAGACTTCTGAAGAGCAGA
GGAAAATATGGTCAAGACATATCCCGAGAAGATGTTATAACTGCTATTAAGAAAATAAAG
GTGTTAGGTACCGGTTTTACCATAATCGGCAGTGGAGAAAGGTGCATGATACAGTCTGTC
CCAGGTGAATTGAACATGGATCATACTACTGTACTTGAGCAAGCTCAAAAGAACGGTGGA
AAAATCTGCTGCCCTATCCTGGAAAAAGCTTTGTCCTGGAAACAGGAAAGATCCGAACTT
ATACTCGATCATCTATTACGTGAAGGAATGTGCTGGGTTGATAAACAGTCACCTGATAAA
CAGTTGTGGTACTGGTTTCCGGCATTGTTCAACGAAGCAGATTGATGAAGATTTGAAATT
GTGTTTTTTATTTCTATGATGTAACAGTCATCTGTGTGTGTGATAGAACTATATGCTTAT
GAGGATTGTTTACTGATCAGAGATAAGGTTTGGCTATTACATGACCTCTTCATTATGATT
CACTTGAATTATCGTGGTATGCTTATGTGTCTAAAAACCTGAAGTTGATTCGGACTTTTT
TTTTAATGTGAACTATGTGACATGTAAGACGGGTGTGCATGAAATAATTAAGAATCGTTT
TGGAATATTGAAGTATTCCCTATTCTATACATACGTGCAAATTTTCAAAGTTGTTTCATA
ATAACTTAGGTAGCATACACACAATCATTTACCTGTTCTGTTTTGTACAAAATATTATTA
AGATTTTTTGAAGTTCCATTCGTAATCAGTGTATACTGTTTGTATAAATGATATGCTTCC
TTTATAGCTCAAGCTAACATAAGATTTCACTGTTTTAATTTTCTGGCATTGAGTTTACTT
GTTTTGAAATGAATCATACTCTTTGTAGGGATATTGAATTTATAGCATGTTTTTATGCAC
TTGATAGTGAAAGTTTTATATCCTTTCCTCTACCTGATGTCAAGAAATGCTATGTTCTTT
TTTCAG

InterProScan

PANTHER
ESCRT-2_cplx_Snf8 (IPR016689) - T[1-244] 3.7E-98
PIRSF
ESCRT-2_cplx_Snf8 (IPR016689) - T[2-246] 4.0E-92
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[25-175] 9.52E-48 - T[176-242] 1.41E-12
Gene3D
WH-like_DNA-bd_sf (IPR036388) - T[92-172] 2.2E-30 - T[173-246] 1.7E-23

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SNF8_HUMAN 64.344 % 329 8.03E-115





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