- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S237.g03857.01.t
Possible name(s)
RARA; RARB; RARG
Gene model
Location
S237 [58,475 / 65,783]
Amino acid sequence
Length: 500
>Harore.CG.MTP2014.S237.g03857.01.p
MNMIEFQEQWRNRMNGILSDIFSNGTGVTMMMDTSPPMGPPNGHPPQNIHYPPHSIPNGH
HHHHSQPTSNMAYSTNHLSGNHHSAALNTQSSYYPWEYTSRSSPDSVGLSSASSSTSGSE
SEAIASSYATPPSPPPPPRVYKPCFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTC
HRNKNCVINKSTRSRCQYCRLQQCFQAGMLRESVRNDRNKKRGKEKDGKSGEGSPGSSTS
PGQTPDDIVVTSEIESVVSTVSQAHIDTFPLTQTLSKYNAANEKVKLPPVEQQKGPLDLW
LWSKFSELSTKSIIKIVEFAKRVPGFTDLTIADQITLLKCACLEILFFRICSRYDPTNDT
MSFSDGLTLNRTQLCNCAFGPMTEQVFSFASSLHPFDLDHTEGGLLCAICLICADRPDLE
EPEKVEQLQEPLVEGLKWYSRKRRANKPQVFPKLILKIADLRCISFRGADRVITIRKEIP
STAMPPLMTEMLINEDTVDN
Nucleotide sequence
Length: 1,982
>Harore.CG.MTP2014.S237.g03857.01.t
ATCCCGGGTGATTTTATCTTTGCCTGCTGACACTTTACTCCAAAGCAGCAAAGATGAATA
TGATTGAATTCCAAGAACAATGGCGAAACAGAATGAACGGGATTCTGTCCGATATATTTT
CGAATGGAACGGGTGTTACGATGATGATGGATACCTCGCCTCCCATGGGTCCTCCTAACG
GTCACCCACCTCAAAACATCCATTACCCTCCACATTCGATTCCGAATGGGCATCATCATC
ACCATAGCCAACCGACTTCAAACATGGCCTATTCGACCAATCATCTCTCTGGAAATCATC
ACTCGGCTGCATTGAATACTCAATCTTCTTACTATCCATGGGAATATACTTCGAGATCGT
CTCCTGATAGCGTGGGACTTTCCTCTGCGAGTAGCAGTACTTCCGGTTCCGAGTCGGAAG
CGATAGCATCCTCTTATGCTACGCCTCCTTCCCCTCCACCTCCCCCTCGCGTCTATAAGC
CGTGCTTTGTTTGTGGAGACAAGTCGTCGGGTTACCACTATGGAGTGGCGTCATGTGAAG
GATGCAAGGGATTCTTTCGACGTTCTGTGCAGAAGAATATGCAATACACTTGTCATCGAA
ACAAGAATTGCGTCATTAACAAGTCGACGCGTAGTCGTTGTCAATATTGTCGTCTGCAGC
AATGTTTTCAAGCAGGCATGTTGAGAGAATCTGTAAGAAACGACAGAAATAAGAAGCGTG
GTAAGGAAAAGGATGGTAAATCGGGAGAAGGTTCTCCTGGATCATCAACTTCACCTGGCC
AGACACCGGACGATATCGTTGTGACCTCTGAAATCGAGAGTGTTGTGAGCACTGTTTCTC
AAGCACATATTGATACCTTTCCCCTGACACAAACCTTAAGCAAATATAATGCTGCGAATG
AAAAAGTGAAGCTGCCACCGGTCGAACAGCAGAAAGGACCGTTGGATCTCTGGTTGTGGA
GTAAATTCTCCGAACTTTCAACTAAATCCATCATCAAAATCGTTGAGTTCGCCAAACGTG
TTCCTGGATTTACCGATCTTACCATTGCTGATCAAATAACGCTGTTGAAATGCGCCTGCC
TCGAAATATTGTTCTTTCGTATTTGTTCCCGATACGATCCTACAAACGACACCATGTCGT
TTTCTGACGGCCTTACGTTGAATCGAACACAGCTGTGTAATTGTGCATTTGGACCGATGA
CAGAACAGGTTTTTTCTTTTGCAAGTTCTCTGCATCCTTTCGATTTAGATCATACAGAAG
GGGGACTTCTGTGTGCTATTTGCTTAATATGCGCCGATCGTCCTGACCTCGAAGAACCAG
AGAAAGTCGAACAATTACAGGAACCTCTTGTCGAAGGACTGAAATGGTATTCAAGAAAAA
GGAGAGCTAACAAACCTCAAGTTTTTCCCAAGTTAATCTTGAAAATAGCTGATTTAAGAT
GTATAAGTTTCAGAGGTGCCGATCGTGTCATCACAATCAGAAAAGAAATACCATCTACAG
CGATGCCGCCACTAATGACGGAAATGCTGATTAATGAAGACACCGTCGATAATTGAGCAT
AAATTTAAAACTCTCCAAACTCCCCGTGATTTTTCTACATTCTGCCTCTATACGCTGCTC
CACAGCAAGGTTGTTAGTTAAGTTTTCGTCTTTTCCGAAATCCACCTTGCGTTTTGCCTT
ACGAAATACACCCTTACATCTGTTCTAACCGGAGCAATGAAGAACGAAAAAGGAAATAGA
TTCACACCATAAATAGAAGGGAATAACTTGTTTTATAAGTTTTTTTTCTTTTTCATGAAT
GCAGTAGTTGCTTCTGCTAGCTAAAAACTCGTAACTTTCTGCATTAGCGGTAGCGTGGAA
CCTGACAACTCCCAAAACAACAGAAAATATTATTTTTCGCCTCATAGTTTCTTTAATTAC
AAAATAATATTAATGGTAACATCAAACATGATACCCTCCTCTTGCATGAGATCCAGGGAA
GT
| PRINTS |
Retinoic_acid_rcpt (IPR003078) - T[118-135] 3.1E-28 - T[351-375] 3.1E-28 - T[388-400] 3.1E-28 - T[418-439] 3.1E-28 - T[462-477] 3.1E-28 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[138-233] 8.3E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[141-216] 20.657 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[141-212] 1.3E-39 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[143-210] 1.9E-31 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[144-160] 1.2E-18 - T[160-175] 1.2E-18 - T[193-201] 1.2E-18 - T[201-209] 1.2E-18 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[144-170] . |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[193-264] 4.73E-68 - T[296-492] 4.73E-68 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[205-215] 5.1E-28 - T[308-329] 5.1E-28 - T[329-345] 5.1E-28 - T[396-411] 5.1E-28 - T[453-470] 5.1E-28 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[304-469] 5.9E-19 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[307-465] 3.7E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 60.942 % | 452 | 1.64E-156 |
| RARG_HUMAN | 59.452 % | 427 | 1.15E-146 |
| RARA_HUMAN | 54.846 % | 440 | 1.05E-151 |