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  1. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S241.g13932.02.t

Possible name(s)

SMC2; SMC5; SMC6

Gene model

Harore.CG.MTP2014.S241.g13932

Location

S241 [48,792 / 66,524]

Sequences

Amino acid sequence

Length: 1,077

>Harore.CG.MTP2014.S241.g13932.02.p
MIVDDESIAVASTQRKLSRKKFCRGSIVRIATKNFLTYDQFQFSINPKLNVIIGPNGTGK
SSIVCAVCLGLGGKTGYLARAKDVGEYVKYGKTKAIIEIELFDQPSNILICREIVKHNNS
NKSTTAWFKNGVSVSAKVIEETVSDLNIQLSNLCQFLPQEKVADFAKMNKHELLENTELA
VCDPQMHKDHMALKDFRTIEKQLQSRHVSEQENLELMKRKNQRMEQDVQRFKERKNLLEK
AEELEKKRAWTVYEIARQEFVELKQKFEVLKKECSESQKDSLFLDKKLDAAARAAEEINQ
SMRLKGEKLKAAANATKKIHDQISAIEDSIKDKEVEFAEKEKYEQQRLKKLDQCRLMVDG
WKKEMQEISNEDVQPKIDILSKELHELVTKINSLEFDMQSKSSECDNRNKEIQECDRKLG
HLMNLSNRRLECLKMMNKDMYNAVEWLRNNHSIFKGRVFEPIMLVLTMTDDRCAEILENH
VAIRDMIAFVCEEPEDNARLVAELRGKLKLKINVVKAPRDKSGKLIKANEFRPLKPIGHL
KQWGFTSYLREMFTAPDPVMAFLCKQYGVHRVPVGSQRTMDIVDQVTDKSQQSLFYIPST
VNPRTKKVVPGIRFSVRKSKYSNNSTVANRSLKQPQYLTANVDPEQIQELESRKRELIDL
NMAAKQDIIEFQKKKKLWEKEDNKLREDKKSLQMQKSRRKTMENNIQMKLKTIEELLSSH
VDVESLRNQLKISLGEIYMGKKQLALNFARNIKECTMLSLDKAHTTVKYVAAIAVKNKIE
DSIRFGHARQLESRTKLERAEGEKKDSQAKAKNLLGEAKQKTGGDPGDEMRKIFSSLPDS
VTEMDTLIHDYRARAECCTATDPHVIEEYNKRQKEIEILQRRVDDFCTQLAKSRTEIEVV
KQRWLKPLEKLVREINAKFSKYFAHMGCAGEVDLHSDNVEEYDKYGIRIRVKFRSSSSLQ
ELNPFRQSGGERSVSTMLYLMALQSLRTCPFRLVDEINQGMDPYNERRVFEIIVSSSSET
DSSQYFLITPKLLPNLTYNEHMTVHCIYNGPYMLSCPQWKISRFKRKRKHLRYEDED

Nucleotide sequence

Length: 3,636

>Harore.CG.MTP2014.S241.g13932.02.t
AAGATACTAGCATAATAGTGAGAGTTGTGCTACCAAGACAATGATAGTTGATGATGAGTC
CATAGCAGTCGCCTCAACGCAACGTAAGCTTAGCAGAAAGAAATTTTGCCGTGGTTCAAT
TGTCAGAATTGCAACCAAGAATTTTCTAACATATGACCAGTTCCAGTTTTCCATCAATCC
CAAACTCAACGTAATCATTGGTCCCAATGGCACAGGCAAATCAAGCATAGTGTGTGCGGT
TTGTCTCGGTCTCGGCGGGAAGACTGGATACCTTGCGAGAGCAAAGGATGTCGGAGAATA
TGTTAAATATGGAAAAACAAAAGCTATCATTGAAATTGAGCTATTTGATCAGCCAAGTAA
CATTTTGATATGCCGGGAAATAGTAAAGCACAACAACTCAAATAAATCCACTACGGCTTG
GTTTAAGAATGGGGTTTCGGTATCTGCAAAGGTGATTGAAGAGACAGTTAGTGATTTGAA
TATCCAGCTTTCGAATCTTTGCCAATTCTTACCACAAGAAAAGGTGGCTGATTTTGCGAA
AATGAACAAGCATGAGCTTTTGGAGAACACAGAACTAGCAGTTTGTGATCCTCAAATGCA
CAAAGATCACATGGCGTTAAAAGATTTTCGAACCATCGAAAAACAGCTGCAATCTCGTCA
CGTGTCAGAGCAAGAAAACCTCGAACTCATGAAGAGAAAGAACCAAAGGATGGAGCAAGA
TGTGCAGAGGTTTAAAGAACGAAAGAATCTTTTGGAGAAGGCTGAAGAACTGGAGAAAAA
ACGAGCATGGACAGTATATGAAATAGCTCGTCAGGAATTTGTGGAATTGAAGCAAAAATT
TGAAGTGTTGAAGAAAGAATGCAGTGAATCGCAAAAAGATTCATTGTTCTTGGACAAAAA
GCTTGATGCTGCAGCAAGGGCCGCTGAAGAAATCAATCAAAGCATGAGATTAAAGGGTGA
GAAACTTAAAGCAGCCGCAAACGCCACAAAAAAGATTCATGATCAGATAAGTGCAATCGA
GGACAGCATCAAAGACAAGGAAGTCGAATTTGCTGAGAAAGAAAAATACGAACAGCAGCG
TCTGAAAAAGCTTGATCAGTGCCGTCTTATGGTAGATGGTTGGAAGAAGGAAATGCAAGA
AATTTCTAACGAGGACGTTCAGCCAAAGATCGACATCCTAAGCAAGGAACTACATGAACT
TGTCACAAAAATCAATAGTTTAGAGTTTGATATGCAGAGCAAATCTTCAGAATGTGACAA
CAGAAACAAAGAAATACAAGAATGCGATCGAAAGCTGGGCCACCTGATGAATTTGAGTAA
CAGAAGATTGGAATGTTTGAAGATGATGAACAAGGACATGTACAATGCTGTCGAATGGCT
CAGAAACAATCATTCCATCTTCAAAGGAAGGGTTTTTGAACCAATCATGCTTGTTCTCAC
AATGACAGATGACCGATGCGCAGAAATTTTGGAAAATCACGTTGCCATACGAGACATGAT
AGCCTTTGTGTGTGAAGAACCAGAAGACAATGCAAGACTTGTAGCTGAATTGCGTGGAAA
GCTGAAACTGAAGATTAATGTAGTCAAAGCTCCGAGAGATAAGAGTGGAAAACTTATTAA
GGCAAATGAGTTTCGACCCCTGAAACCGATCGGACATTTGAAGCAATGGGGATTCACTTC
TTATCTAAGAGAGATGTTCACAGCACCAGATCCAGTCATGGCATTCCTCTGCAAGCAATA
CGGAGTGCACAGAGTGCCGGTTGGATCGCAAAGAACAATGGACATCGTTGATCAGGTTAC
TGATAAAAGTCAACAATCACTGTTCTACATTCCTTCAACCGTCAATCCTCGTACGAAGAA
AGTCGTTCCCGGCATTAGGTTCTCTGTCCGTAAATCAAAGTATAGCAACAACAGCACAGT
TGCAAATAGATCCTTGAAACAACCACAATATCTCACAGCTAATGTCGACCCTGAACAAAT
TCAAGAACTTGAATCAAGAAAAAGGGAGTTGATTGATCTCAACATGGCCGCAAAACAGGA
TATCATTGAGTTTCAAAAAAAGAAGAAATTGTGGGAGAAGGAAGACAACAAATTGAGAGA
GGACAAGAAATCGTTGCAAATGCAGAAATCAAGAAGAAAAACAATGGAAAATAATATTCA
AATGAAGTTGAAAACTATTGAGGAGCTTCTCTCATCTCACGTAGACGTGGAATCCTTGCG
GAACCAACTCAAGATTTCGCTCGGTGAAATCTACATGGGGAAGAAACAACTTGCGTTGAA
CTTTGCCCGGAACATTAAGGAATGCACAATGCTAAGTTTAGATAAAGCACATACCACTGT
AAAATATGTTGCTGCTATCGCTGTAAAGAACAAGATTGAAGACAGCATCAGATTCGGACA
TGCTCGACAACTGGAAAGTAGAACGAAACTGGAAAGGGCAGAAGGTGAGAAAAAAGATTC
GCAGGCAAAAGCAAAGAATTTGCTCGGGGAAGCAAAGCAAAAGACAGGTGGAGATCCTGG
TGATGAAATGAGAAAAATATTTTCGTCTCTACCTGATTCTGTTACGGAAATGGACACGCT
GATTCACGACTACAGAGCAAGAGCTGAATGCTGTACTGCTACTGATCCTCATGTTATTGA
AGAATACAACAAAAGGCAGAAGGAAATTGAAATCCTGCAAAGGCGTGTGGATGATTTTTG
CACACAGTTGGCTAAAAGCCGTACAGAAATCGAAGTGGTAAAGCAGAGGTGGTTGAAGCC
TTTGGAAAAATTAGTAAGAGAAATAAATGCCAAGTTTTCCAAGTATTTTGCTCACATGGG
TTGTGCTGGGGAAGTTGACCTCCATTCAGACAACGTGGAGGAGTATGATAAATACGGAAT
ACGAATCCGTGTGAAATTCCGAAGTTCTTCCTCGTTGCAGGAGCTAAATCCTTTTCGACA
GAGCGGGGGGGAAAGGAGTGTTTCCACAATGTTATACTTGATGGCTTTGCAATCACTACG
TACTTGCCCATTTAGATTAGTTGATGAGATAAACCAAGGTATGGATCCATATAATGAAAG
GCGAGTCTTCGAAATCATTGTTTCTTCATCATCTGAAACAGATTCTTCACAATATTTCTT
GATCACACCAAAGCTCCTACCGAATTTAACATACAATGAGCATATGACTGTTCACTGCAT
ATACAACGGTCCCTACATGCTCTCTTGCCCACAGTGGAAAATAAGTCGATTCAAGCGTAA
AAGAAAACACCTTCGCTATGAGGATGAAGACTAAAATAATTTTGCTGCATCCTAACCTTA
TTTCTTCAGTTTTTGTAAGTTGTTTATTACCATATTTGAGTATCGGATTAGTGTCTTAAA
TTTCGTTATGAAAGTACAGAATTCTTTCATATTCAAGAATCCACTTTTTTCTTTCTTTCA
TTACCTTATTTTACATTACAAATACAGTTGTAATTGTGATCATGCTTTTGTACAGTAGTT
TTTTGATCAGTTATGGAGCGCAAATGTGCAGAGAAAGAGTAAAAAAATCTTGTTGCTTCA
AAATAAAACTGGATTTTGCCATAATAAAGCAGATTAAATAATTTTAAAATACACTTGCTA
TTTTTACGCAAGTTTGAAATTGGAAAGTTCAGGGTC

InterProScan

PANTHER
SMC5 (IPR027131) - T[20-1063] 0.0
Pfam
RecF/RecN/SMC_N (IPR003395) - T[27-1029] 1.2E-21
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[27-182] 1.94E-30 - T[939-1030] 1.94E-30

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMC5_HUMAN 39.833 % 743 0





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