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- Transcript 'Haaura.CG.MTP2014.S1...' >
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- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S245.g05817.02.t
Possible name(s)
AMY1A; AMY1B; AMY1C
Gene model
Location
S245 [85,490 / 90,909]
Amino acid sequence
Length: 576
>Harore.CG.MTP2014.S245.g05817.02.p
MKLIFIFTTLVACASAQWDANFANDRFGIVHLFEWHWDTIADECETVFQDYKIGGVQTSP
PNENRVIDNRPWWERYQPISYILGTRSGDRNAFINMVQRCNAAGVRIYPDIVINHMCGNG
GSGTGTAGSPFNADIGKESFPGVPYGPNDFNSKDKCGTSNGEIQNYGDANEVRNCMLVGL
LDLNQGTDYVRGEIIAFMNDLIDIGVAGFRVDACKHMWPGDLEVIFGNLRDLNSNYFGTG
KRAYIFSEVIDQGGEPITASEYTGLGSVTEFKYGLNLANNKNSLQNLKSFGEAWGMLPGS
EALAFINNHDNQRGHGGGGSIVTFKDSYDLKILTAFMLAWPYGVPRVMSSYYFDDPDQGP
PSSQRGVNGDGSCSNGWVCEHRWRQIRNMFGFSTAVIGTSMNDWWDNGNNQIAFARENKG
FIAINRAGYDMSENLQTGLPQGTYCNVINGDYTNGGCGGECIAVGTDGKANIFIAGDSSD
PIVAIHANARSDTCNTGESGGGGTGTGTGTGGGSSTTCVDCTCTSKIDCGDLTSTEASCE
ADGCMWCESQIAGEPWCFYTADTTPSGGNGLFFTIS
Nucleotide sequence
Length: 1,731
>Harore.CG.MTP2014.S245.g05817.02.t
ATGAAGTTGATTTTCATTTTCACGACTTTGGTCGCCTGTGCTTCGGCACAGTGGGACGCA
AATTTCGCTAACGATCGGTTCGGCATCGTTCATTTGTTTGAATGGCACTGGGACACAATC
GCTGATGAATGTGAAACTGTCTTTCAAGATTACAAAATTGGTGGAGTTCAGACATCCCCA
CCAAACGAAAATCGTGTCATTGACAACCGACCCTGGTGGGAAAGATACCAACCAATATCA
TACATTCTTGGTACGAGATCAGGAGACAGGAATGCATTCATAAACATGGTCCAACGTTGC
AATGCAGCTGGCGTGAGAATTTATCCAGATATCGTAATCAACCATATGTGTGGAAACGGT
GGCTCAGGAACTGGAACCGCTGGTAGTCCATTCAATGCCGATATAGGAAAAGAAAGCTTC
CCTGGTGTCCCATATGGTCCAAACGATTTCAACAGCAAGGACAAGTGCGGAACAAGTAAT
GGAGAGATTCAAAACTATGGAGATGCAAACGAGGTGCGAAACTGCATGTTGGTCGGTCTA
CTAGATTTAAATCAAGGAACAGACTATGTGAGAGGTGAAATTATCGCTTTTATGAATGAC
TTGATCGACATTGGCGTTGCTGGATTTCGAGTCGACGCTTGCAAGCACATGTGGCCTGGA
GATTTAGAAGTCATATTCGGAAACCTAAGAGATCTGAACTCCAATTATTTTGGTACAGGG
AAGAGAGCTTATATTTTCTCGGAAGTGATTGACCAAGGAGGAGAACCTATCACTGCTAGT
GAATACACTGGCCTCGGATCAGTAACAGAGTTTAAGTATGGGCTCAACCTTGCAAACAAC
AAAAATTCACTTCAGAACTTAAAAAGCTTCGGAGAGGCATGGGGAATGTTGCCGGGATCA
GAAGCCTTGGCATTTATCAATAACCATGACAACCAGAGAGGACATGGTGGTGGCGGTTCC
ATTGTCACATTCAAAGATTCATATGATTTAAAGATCCTGACTGCTTTCATGTTGGCCTGG
CCATACGGAGTACCAAGAGTGATGTCCAGTTACTACTTTGATGATCCGGATCAAGGACCC
CCGTCCAGTCAACGTGGCGTGAATGGAGATGGTTCATGTTCGAACGGATGGGTATGTGAG
CATAGATGGCGACAAATAAGAAATATGTTTGGATTTTCCACCGCAGTCATAGGCACCTCC
ATGAATGACTGGTGGGACAACGGTAACAACCAGATTGCTTTCGCTCGTGAAAACAAGGGA
TTTATTGCTATAAATCGTGCTGGCTATGACATGTCGGAGAATCTACAAACTGGATTACCA
CAAGGAACCTACTGCAATGTAATTAATGGTGATTATACCAACGGAGGTTGTGGAGGTGAA
TGTATAGCGGTCGGTACCGATGGAAAGGCTAATATATTTATTGCTGGAGACAGCTCTGAT
CCGATAGTCGCTATACATGCCAATGCACGATCAGACACATGCAACACAGGTGAATCTGGG
GGAGGTGGCACCGGCACCGGTACTGGTACCGGAGGAGGGTCAAGCACAACTTGTGTCGAC
TGCACATGCACTTCTAAAATCGATTGCGGAGATCTGACTAGCACGGAAGCATCATGTGAA
GCTGACGGATGCATGTGGTGCGAGTCTCAAATAGCAGGCGAACCATGGTGCTTTTATACA
GCAGATACTACACCGAGCGGTGGGAATGGTTTATTCTTTACTATATCTTAA
| SUPERFAMILY |
Glycoside_hydrolase_SF (IPR017853) - T[22-392] 1.29E-87 |
| SMART |
Glyco_hydro_13_cat_dom (IPR006047) - T[27-393] 1.6E-75 |
| PRINTS |
Alpha_amylase (IPR006046) - T[72-89] 3.1E-30 - T[104-115] 3.1E-30 - T[206-217] 3.1E-30 - T[244-262] 3.1E-30 - T[300-312] 3.1E-30 |
| Pfam |
Glyco_hydro_13_cat_dom (IPR006047) - T[88-340] 2.2E-10 |
| Gene3D |
Glyco_hydro_b (IPR013780) - T[399-491] 9.5E-35 |
| SMART |
A-amylase_C (IPR031319) - T[402-490] 1.4E-41 |
| Pfam |
A-amylase/branching_C (IPR006048) - T[405-475] 2.5E-15 |
| ProSiteProfiles |
P_trefoil_dom (IPR000519) - T[516-561] 12.558 |
| SMART |
P_trefoil_dom (IPR000519) - T[521-564] 0.0061 |
| Pfam |
P_trefoil_dom (IPR000519) - T[524-559] 1.0E-5 |
| CDD |
P_trefoil_dom (IPR000519) - T[526-559] 1.86386E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| AMYP_HUMAN | 52.529 % | 503 | 1.57E-174 |
| AMY1_HUMAN | 53.113 % | 511 | 1.35E-177 |
| AMY2B_HUMAN | 52.529 % | 503 | 1.41E-174 |