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  1. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S247.g09408.01.t

Possible name(s)

VIPAS39

Location

S247 [69,190 / 72,903]

Sequences

Amino acid sequence

Length: 503

>Harore.CG.MTP2014.S247.g09408.01.p
MTSARKTTKPLTGQNEAADEYWNASSTFKKFDFDEDDEEEDSIDVIEWNGSTAKPVRPHS
QQMQKTVSSITPTKAQSARTHRSRTQIPPSAGQAVKYNVGNNTINTGNKSASETRSTTET
PKNKDTFSTTDIVKFETEMNLLRRKLLQAKRDRAQAPSRSETLKRIMLGDPCVLELYRSI
EDKTALLDDAIKRHDGNAIIAVIFFMRNSLKRELFSKELMNRPVAVDHYCAYLRGMSEHE
ELHEILTVLGRTEEAAMLKYRQCLHNSRSPELRVNGLKDCIKYYFDSDPLLATQTREIQE
EAALLQRQIIIDDNDQQMQDSSTPSVFQTHPRRESLKKKSLITTLYYCCYYHWGEKEGIL
SSPLSLKNEYKVGEKQFTYIAVAALCRMRKWRDLEQLMTIPKSLFRSARLQTCIGFDKVV
DVLAKNLAPPDAIGKYCAEIENSETRLETASKYKCYKVVIDTLVHMKDRQQLMSYLNSIP
DNNQHMRQYLISQTRRQEIKWKN

Nucleotide sequence

Length: 1,998

>Harore.CG.MTP2014.S247.g09408.01.t
AAAAATATATTTGGTAATATTTTTTAATAAGCCGGGTAGTAATGACCAGCAGTTAATTCG
CATGGAAATTACTCCACACAAAGCTTAAGAGTTCAACCGCAGACATGACTTCGGCGAGGA
AAACAACCAAACCTCTGACTGGACAAAATGAAGCTGCAGACGAGTACTGGAATGCATCTT
CGACCTTCAAGAAATTCGATTTTGATGAAGATGACGAGGAAGAGGATAGTATCGATGTTA
TTGAATGGAACGGATCAACTGCTAAACCAGTCCGACCTCATTCTCAACAAATGCAGAAGA
CGGTCAGTAGTATCACTCCAACTAAAGCACAGTCCGCTAGAACACACAGATCCCGGACAC
AGATTCCACCATCGGCAGGGCAGGCAGTCAAGTACAATGTTGGGAACAACACAATAAACA
CAGGCAATAAATCAGCAAGTGAAACAAGAAGTACCACGGAAACACCAAAGAACAAAGATA
CCTTCTCGACCACTGATATTGTAAAGTTTGAAACAGAAATGAACTTGTTGCGTAGAAAGC
TTCTGCAAGCGAAGCGTGACAGAGCTCAGGCTCCTTCTCGTTCGGAAACATTGAAGCGAA
TTATGTTGGGTGATCCATGTGTATTGGAACTCTACCGTTCTATTGAGGACAAAACCGCTC
TGCTTGACGATGCGATAAAAAGGCACGACGGCAATGCAATCATCGCTGTTATATTTTTCA
TGAGGAATTCTCTAAAAAGAGAACTATTCAGCAAAGAGCTGATGAACAGACCAGTAGCAG
TAGACCACTACTGTGCTTATTTACGAGGCATGTCCGAGCACGAAGAACTGCACGAAATAT
TGACGGTGTTAGGTCGAACAGAAGAAGCAGCGATGCTTAAATACAGACAATGTTTACATA
ACTCCAGATCGCCGGAACTTCGAGTCAACGGCTTGAAGGATTGCATAAAGTACTATTTCG
ATTCCGATCCTCTTCTCGCCACTCAAACACGAGAAATACAGGAAGAAGCTGCCTTGTTGC
AGAGGCAAATCATTATAGATGACAACGATCAACAAATGCAAGACTCTTCGACACCTTCCG
TGTTCCAAACTCATCCTAGACGAGAATCTCTTAAGAAAAAATCGCTCATCACAACGCTGT
ATTACTGTTGCTATTATCACTGGGGTGAAAAAGAGGGGATACTAAGCAGTCCACTATCAC
TGAAGAACGAATATAAAGTTGGAGAAAAGCAGTTCACATACATAGCTGTTGCGGCTTTGT
GCCGTATGCGGAAGTGGAGAGATTTGGAGCAGTTGATGACCATCCCAAAATCGCTGTTTC
GGAGCGCACGACTCCAAACTTGCATAGGTTTCGATAAAGTCGTCGATGTACTCGCCAAGA
ATTTGGCTCCACCTGACGCAATCGGGAAGTACTGCGCTGAGATCGAAAATTCAGAGACTC
GTTTGGAAACCGCTTCCAAGTATAAATGCTATAAAGTGGTTATCGATACCCTTGTCCATA
TGAAAGACAGACAACAACTAATGTCTTACCTCAATTCAATACCTGATAACAACCAACATA
TGAGACAATATTTGATCAGTCAAACAAGAAGACAGGAAATCAAATGGAAAAATTGAAATT
CATCGGAGATACTTGCGCTTAATCATGTGGCCGCTAAACGCTGTCTGCTTCTCCTAATGA
TATCAATCATATTTTAACACTAACCTTGCTTTAGTAGTATTTTTCAACTGTAGAAAGGTT
GTAAATTACCAGGGGAGAATCTGTGACTCAAGATTGAAATAATCCCATAGGTACTTTTAG
TACTAAAAGTCATAATAAATTATTAGCCATATTGTGTTGTCACAAATGCGTATTTTATAA
TCAACCATGTGCTGTAGTCAAATGTTATCTGTAGTTATGAATGGTCCTAGTTCTGCATTG
CTGTATATTGTGCTATTGATCGACTATATATAATTTATAACAATGATGCGTACACTATAT
CAAAATAAATGCACAAAC

InterProScan

Gene3D
Vps16_C_sf (IPR038132) - T[173-456] 5.8E-20
Pfam
Vps16_C (IPR006925) - T[176-289] 9.2E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SPE39_HUMAN 32.48 % 244 5.24E-75





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