Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S247.g09408.02.t

Possible name(s)

VIPAS39

Gene model

Harore.CG.MTP2014.S247.g09408

Location

S247 [69,294 / 72,547]

Sequences

Amino acid sequence

Length: 522

>Harore.CG.MTP2014.S247.g09408.02.p
MTSARKTTKPLTGQNEAADEYWNASSTFKKFDFDEDDEEEDSIDVIEWNGSTAKPVRPHS
QQMQKTVSSITPTKAQSARTHRSRTQIPPSAGQAVKYNVGNNTINTGNKSASETRSTTET
PKNKDTFSTTDIVKFETEMNLLRRKLLQAKRDRAQAPSRSETLKRIMLGDPCVLELYRSI
EDKTALLDDAIKRHDGNAIIAVIFFMRNSLKRELFSKELMNRPVAVDHYCAYLRGMSEHE
ELHEILTVLGRTEEAAMLKYRQCLHNSRSPELRVNGLKDCIKYYFDSDPLLATQTREIQE
EAALLQRQIIIDDNDQQMQDSSTPSVFQTHPRRESLKKKSLITTLYYCCYYHWGEKEGIL
SSPLSLKNEYKVGEKQFTYIAVAALCRMRKWRDLEQLMTIPKSLFRSARLQTCIGFDKVV
DVLAKNLAPPDAIGKYCAEIENSETRLETASKYKCYKVVIDTLVHMKDRQQLMSYLNSIP
DNNQHMRQYLISQTRRQVMNRYYRTGIRNQMEKLKFIGDTCA

Nucleotide sequence

Length: 1,569

>Harore.CG.MTP2014.S247.g09408.02.t
ATGACTTCGGCGAGGAAAACAACCAAACCTCTGACTGGACAAAATGAAGCTGCAGACGAG
TACTGGAATGCATCTTCGACCTTCAAGAAATTCGATTTTGATGAAGATGACGAGGAAGAG
GATAGTATCGATGTTATTGAATGGAACGGATCAACTGCTAAACCAGTCCGACCTCATTCT
CAACAAATGCAGAAGACGGTCAGTAGTATCACTCCAACTAAAGCACAGTCCGCTAGAACA
CACAGATCCCGGACACAGATTCCACCATCGGCAGGGCAGGCAGTCAAGTACAATGTTGGG
AACAACACAATAAACACAGGCAATAAATCAGCAAGTGAAACAAGAAGTACCACGGAAACA
CCAAAGAACAAAGATACCTTCTCGACCACTGATATTGTAAAGTTTGAAACAGAAATGAAC
TTGTTGCGTAGAAAGCTTCTGCAAGCGAAGCGTGACAGAGCTCAGGCTCCTTCTCGTTCG
GAAACATTGAAGCGAATTATGTTGGGTGATCCATGTGTATTGGAACTCTACCGTTCTATT
GAGGACAAAACCGCTCTGCTTGACGATGCGATAAAAAGGCACGACGGCAATGCAATCATC
GCTGTTATATTTTTCATGAGGAATTCTCTAAAAAGAGAACTATTCAGCAAAGAGCTGATG
AACAGACCAGTAGCAGTAGACCACTACTGTGCTTATTTACGAGGCATGTCCGAGCACGAA
GAACTGCACGAAATATTGACGGTGTTAGGTCGAACAGAAGAAGCAGCGATGCTTAAATAC
AGACAATGTTTACATAACTCCAGATCGCCGGAACTTCGAGTCAACGGCTTGAAGGATTGC
ATAAAGTACTATTTCGATTCCGATCCTCTTCTCGCCACTCAAACACGAGAAATACAGGAA
GAAGCTGCCTTGTTGCAGAGGCAAATCATTATAGATGACAACGATCAACAAATGCAAGAC
TCTTCGACACCTTCCGTGTTCCAAACTCATCCTAGACGAGAATCTCTTAAGAAAAAATCG
CTCATCACAACGCTGTATTACTGTTGCTATTATCACTGGGGTGAAAAAGAGGGGATACTA
AGCAGTCCACTATCACTGAAGAACGAATATAAAGTTGGAGAAAAGCAGTTCACATACATA
GCTGTTGCGGCTTTGTGCCGTATGCGGAAGTGGAGAGATTTGGAGCAGTTGATGACCATC
CCAAAATCGCTGTTTCGGAGCGCACGACTCCAAACTTGCATAGGTTTCGATAAAGTCGTC
GATGTACTCGCCAAGAATTTGGCTCCACCTGACGCAATCGGGAAGTACTGCGCTGAGATC
GAAAATTCAGAGACTCGTTTGGAAACCGCTTCCAAGTATAAATGCTATAAAGTGGTTATC
GATACCCTTGTCCATATGAAAGACAGACAACAACTAATGTCTTACCTCAATTCAATACCT
GATAACAACCAACATATGAGACAATATTTGATCAGTCAAACAAGAAGACAGGTAATGAAC
CGTTATTATCGAACAGGAATTAGAAATCAAATGGAAAAATTGAAATTCATCGGAGATACT
TGCGCTTAA

InterProScan

Gene3D	Vps16_C_sf (IPR038132) - T[173-456] 6.3E-20
Pfam	Vps16_C (IPR006925) - T[176-289] 9.8E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SPE39_HUMAN	33.058 %	240	2.75E-73