- Transcript 'Phmamm.CG.MTP2014.S5...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S248.g06829.01.t
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
S248 [5,174 / 77,446]
Amino acid sequence
Length: 1,479
>Harore.CG.MTP2014.S248.g06829.01.p
MMTDLSFNKIAIIQKKTLRGPTVLRTLQLNNNEITCLHDSSLRPVRTLEFLTLDNNKLST
LSPMSFLHMSKLRTFRFNENPIHCDCHLAWMAEWLRARPSAGLYTQCVEPTALRGMEIKH
LERSEFVCNVLTSRSRPTCELDSYCPSVCTCDNGIVDCRDKGLTSLPASLPSDVTEIRLE
RNMIKVLPSRAFADYKKLRRIDLSNNMITDVSKDAFQGLKQLNSLIMYGNKISDLHKGTF
DGLVNLQLLLLNANKIMCLRHDSFDSLTSLKLLSLYDNKIQSISKGTFKSLKSVQTLHLA
QNPFICDCNLRWLADYLQENPVETSGARCAAPRKLSNKKIAQIRSRKFKCDADNGFPPPL
AGECTPESECPDRCKCDGTIVDCSSQELTGIPDNIPPYVTDLILSFNNIDTLVRVDVFKK
MTNLKKIDLSNNKLTKIEKGAFNGASSVLELWINDNELKELKGEMFSGLDNLKTLMARNN
RLSCINNETFSGLSSLSHLSLYGNKISSIVEGAFDSLSSLALLNLLSNPLNCNCHMAWLS
VWLRQGTFSSGNPRCSQPSFLHGFPVADINPQDFRCTSQERSDPPTCKPEVKCPQHCSCE
GNIVRCINSGLTSFPVDDIPEDVTELYLNLNMIRMIPPEIKKFTKLVKLDLSNNQIATLQ
DYIFSNFTQLSTLLLAYNKLRCIPPKGFVGLRNLRILSLHSNEISTVADGTFDDLVSLSH
TGFGSNPWYCDCNLAWFNEWINEDYLEPGIAQCSGPPPVAGMVLLTTPISKFVCAGPLSL
PIASKCDPCLSTPCLHNGTCRFHPMEYYQCICPPGFKGKHCEMPVNACNLKPCLNGASCR
GRDEISYTCTCPAGFSGMNCEQNINDCLPSPCRAENATCIDGVNSYKCRCPPGWSGEYCD
IEVEDPCISKTCLNGGECVTVFGSESKISYRCDCKPGFRGQNCSEEFDPCLNHKCENAGR
CVWDETSLSGYRCECPTRTRGQYCEFRHGETTLIQQDDPCHNHDCKNGAQCFVEAGGSSD
FTCKCLPGYSGVKCEILSGVSIRRNGSFIQLPTTLDGMEEIHINLEISTKEMNGVIMYAS
KSAQHLALELFTGYVRLSCNGINSYSSAVINDEEFHEIEVDITASDITLTVDGVQTHGAP
STRLISVTSYLFLGGMPADVLIGARQSWHIRNTTSFIGCIRNVIVGGKSVNFFTARQGEH
EDLFSQDVGIKPGCSADGEASSCYKCLHGDCTYSEESGFTCSCFKGYTGPACDITDEPQT
TPCSNNQCHHGSCRVDSSSSNSYICDCDAGYSGSICDIRDYCAGVDCGQHGTCVTAASGY
ICKCKRGYTGRHCERRIRRCKGTKTRQFVQITIPRPSASGISSSSSSMMCKSSRKMSNLV
CDGSNCSRRRKSAARRRSKSSQATMTSPFSFSDQEEPVATCCVPLRQKTKSVELVCDDGS
RIMQEVTKVQSCGCQTLNASPLERMYLKNVLPRVSIVYQ
Nucleotide sequence
Length: 6,222
>Harore.CG.MTP2014.S248.g06829.01.t
AGTTTTTAACGACAGTAAAAGTACGAATAGCATTTAGTTTTTGACGAGAGCTTCTACTGA
ATCTTTTCCTTCGATCTGCATGAGGAAAAGACTTAAAAAAATAGGAAGAAAGCCGAAAAA
CATTAGCGACAAGTGATACTTCGAAAATCGTGGAAAAAAACTGAGTATTTGAGGATTTTT
TGACATCGGAAGAATTCGGTCGCCTCGCCGCCATGAGAGCATTCATTTTGTCGCTGACGC
TGGCGTATATCGCCGGGCTCGGATACGCCTGCCCTGCCAAGTGTACATGCACGGAAGAAA
TGATGCAATGCATAGAAAAGGGACTTACAAGAATACCAAGTGATATACCGTCGACCATTG
AAAAAATAGAACTACAGAGAAACAACATTACCCATATAACACGGGATGATTTTGCTGGAA
TTGAACATCTTCGAATTTTGTATCTCTCCGAAAACCAAATTTCTAACATCGAGAAGAATT
CGTTCGCTGAGAACACACAGCTCGAGATATTGCGACTAAACCACAATGAACTCACGATAC
TTCCCGAACTGCTCTTCAGCAAGCTTAAGAATCTGCAAAGACTATGATGACCGATCTGTC
GTTCAACAAAATTGCAATCATTCAAAAGAAAACACTTCGTGGTCCGACTGTTCTTCGCAC
ACTACAACTGAACAACAATGAGATCACGTGTCTTCACGATTCTAGTCTACGACCAGTCAG
AACTTTGGAATTTTTGACGTTGGACAACAACAAATTGTCCACATTATCACCCATGAGTTT
CCTGCACATGTCAAAACTGAGAACTTTTCGTTTCAATGAAAATCCAATTCACTGCGATTG
TCACTTAGCATGGATGGCCGAATGGTTACGAGCGAGACCAAGTGCTGGATTATATACACA
GTGCGTGGAACCAACTGCATTGAGAGGAATGGAAATAAAACATCTTGAGCGATCGGAATT
CGTCTGTAATGTACTGACGTCACGAAGTCGTCCAACATGTGAGCTTGATTCCTACTGCCC
TTCTGTTTGTACCTGCGATAATGGAATTGTGGATTGCAGGGATAAAGGGCTGACGTCACT
ACCGGCTTCCCTTCCGTCCGACGTCACTGAAATACGTTTGGAACGAAACATGATCAAAGT
GTTGCCTTCCCGCGCTTTTGCTGATTACAAGAAACTACGAAGAATAGACTTAAGCAACAA
TATGATCACTGATGTTTCAAAAGATGCATTTCAAGGACTCAAACAGTTGAATTCGCTGAT
CATGTACGGAAACAAGATATCAGATTTGCATAAGGGAACTTTTGATGGACTTGTCAACCT
GCAGTTGCTTTTGCTGAACGCGAACAAGATTATGTGCCTTCGACATGACAGTTTCGACAG
CCTGACATCTCTCAAATTGCTGTCACTCTACGACAACAAAATTCAGTCAATATCAAAGGG
AACATTTAAATCTCTCAAATCAGTTCAAACTCTTCATCTTGCACAAAATCCTTTCATTTG
TGATTGCAATCTTCGCTGGTTGGCCGACTATCTGCAAGAGAATCCAGTCGAGACGAGCGG
TGCCAGGTGCGCTGCACCGAGGAAACTAAGCAACAAGAAAATTGCTCAGATACGAAGCAG
AAAATTCAAATGCGATGCAGACAATGGTTTTCCACCACCACTGGCAGGAGAGTGCACACC
GGAATCAGAATGCCCTGACAGATGCAAGTGTGATGGAACAATCGTTGATTGCTCCAGTCA
AGAACTGACTGGAATTCCTGATAATATTCCTCCATATGTAACAGATCTGATTCTTTCCTT
CAATAATATTGATACGCTGGTTCGTGTTGACGTCTTCAAGAAAATGACAAATTTGAAAAA
AATTGATCTGTCTAATAACAAATTGACGAAGATTGAGAAAGGAGCGTTTAATGGTGCTAG
CAGTGTGTTGGAACTATGGATTAATGACAATGAACTGAAAGAATTAAAAGGAGAAATGTT
CTCTGGCCTCGACAATCTCAAGACTTTAATGGCACGTAACAACCGACTTAGTTGCATCAA
CAATGAAACATTTTCCGGATTGTCTTCTCTCTCTCATTTGTCTTTGTACGGAAACAAGAT
TTCAAGCATCGTGGAAGGAGCGTTCGATTCACTTTCATCACTTGCACTTCTAAATCTTCT
ATCCAATCCTCTCAACTGCAATTGTCACATGGCATGGCTCTCTGTCTGGCTTCGTCAGGG
GACTTTCTCTTCCGGAAATCCCCGTTGTTCCCAGCCATCTTTCTTGCACGGCTTCCCAGT
AGCAGACATCAATCCGCAAGATTTCCGATGCACGTCGCAGGAACGAAGCGATCCACCAAC
ATGTAAACCAGAAGTAAAATGTCCGCAACACTGCAGTTGTGAAGGCAACATAGTACGATG
CATCAACTCTGGTCTGACATCATTTCCTGTTGATGACATACCTGAAGATGTCACAGAACT
TTATCTGAACCTTAACATGATAAGAATGATACCGCCAGAGATCAAGAAATTTACAAAACT
TGTAAAACTGGATCTCAGCAATAACCAGATCGCAACTCTGCAGGATTATATTTTCTCCAA
CTTCACTCAACTCTCCACTCTCCTGCTTGCCTATAACAAGTTGCGTTGTATTCCACCCAA
GGGATTTGTCGGCCTCCGTAATCTTCGGATATTGAGTCTTCACAGCAACGAGATATCAAC
TGTAGCGGATGGAACTTTCGATGACCTTGTCTCTCTATCACATACTGGGTTTGGTTCAAA
TCCTTGGTATTGTGACTGCAACCTTGCTTGGTTCAATGAATGGATCAATGAAGATTACCT
GGAACCAGGAATTGCGCAATGTTCTGGTCCTCCACCTGTCGCTGGAATGGTTTTGCTCAC
AACTCCTATATCCAAGTTCGTCTGTGCTGGTCCGCTGAGTTTGCCGATTGCTTCAAAGTG
CGATCCATGTTTGTCAACTCCTTGTCTTCATAATGGAACTTGCAGATTTCATCCGATGGA
GTATTATCAGTGCATATGTCCACCAGGATTCAAAGGAAAACATTGCGAAATGCCAGTTAA
TGCATGTAACCTTAAACCTTGTTTGAATGGAGCATCATGCAGAGGAAGAGATGAGATATC
ATACACATGCACTTGCCCAGCAGGATTTAGTGGAATGAATTGTGAACAAAACATCAACGA
TTGCTTGCCAAGCCCATGCAGAGCTGAGAATGCAACTTGTATTGATGGTGTCAACTCGTA
TAAATGCAGATGTCCCCCTGGATGGTCTGGTGAATATTGCGACATTGAAGTTGAGGATCC
TTGCATTTCTAAAACTTGTTTAAACGGTGGAGAATGTGTGACTGTATTTGGGAGCGAAAG
CAAGATTTCTTACAGATGTGATTGCAAACCTGGTTTCCGTGGACAAAACTGTTCAGAAGA
ATTTGATCCGTGCTTGAATCACAAATGTGAAAATGCCGGACGCTGTGTTTGGGATGAGAC
AAGTTTGTCTGGATACAGATGTGAATGCCCAACCAGAACACGTGGTCAATATTGTGAATT
CCGGCATGGAGAAACAACACTCATACAACAGGACGATCCGTGTCACAATCACGATTGTAA
GAATGGAGCGCAGTGCTTCGTTGAAGCTGGTGGATCATCGGATTTCACTTGCAAATGTCT
GCCTGGATATTCAGGGGTCAAGTGTGAAATTTTATCTGGTGTCAGTATAAGAAGAAATGG
AAGTTTTATTCAACTGCCAACAACATTAGATGGAATGGAAGAAATTCATATTAATCTTGA
AATATCAACAAAAGAGATGAATGGAGTGATCATGTACGCTAGCAAATCAGCTCAACATTT
AGCACTGGAACTTTTTACGGGATATGTCAGATTGAGCTGCAATGGAATAAACTCTTACAG
TAGTGCAGTCATCAATGATGAAGAATTCCATGAGATCGAAGTCGATATAACGGCAAGTGA
CATCACGTTGACTGTGGATGGTGTTCAGACACATGGAGCACCATCAACGAGACTTATCAG
CGTCACATCATACTTGTTTCTTGGAGGAATGCCAGCAGATGTATTGATTGGTGCCAGACA
GAGTTGGCATATTCGTAATACAACCAGTTTCATTGGTTGCATTCGGAATGTGATTGTTGG
TGGGAAATCTGTTAATTTCTTCACTGCGAGACAAGGAGAACACGAGGATCTGTTCAGTCA
AGATGTCGGGATCAAACCAGGATGTTCGGCAGATGGAGAAGCTTCATCATGCTATAAATG
TCTTCATGGAGATTGCACATATTCTGAAGAATCTGGATTCACTTGCAGTTGTTTCAAAGG
TTACACAGGACCAGCCTGTGATATTACCGATGAACCTCAGACAACACCATGTTCTAACAA
TCAATGTCACCATGGATCGTGCAGAGTTGATTCCTCTTCATCAAATTCATATATCTGTGA
TTGTGATGCAGGTTATAGTGGGTCAATATGTGATATCAGAGATTACTGTGCCGGTGTTGA
TTGTGGGCAACATGGCACTTGTGTCACTGCTGCATCTGGATACATCTGTAAATGCAAGAG
AGGATACACTGGAAGACATTGCGAAAGAAGAATACGACGTTGCAAAGGCACCAAAACAAG
ACAATTCGTCCAAATAACAATTCCTCGTCCCTCCGCATCTGGAATTTCATCATCAAGCTC
CTCCATGATGTGCAAGAGCTCAAGAAAAATGTCAAATCTTGTGTGTGATGGTTCGAACTG
TTCACGACGAAGAAAATCAGCCGCTAGGAGGCGCTCCAAAAGCTCGCAGGCAACGATGAC
CAGTCCTTTCAGTTTCTCGGATCAGGAAGAGCCGGTCGCCACATGCTGTGTTCCTCTTCG
ACAGAAAACGAAAAGTGTTGAACTTGTCTGTGACGACGGGTCAAGGATAATGCAAGAGGT
CACTAAAGTTCAAAGTTGCGGTTGTCAGACGTTAAACGCCTCACCGCTCGAACGAATGTA
TTTGAAGAATGTTTTGCCTAGAGTATCAATAGTTTATCAATAAGTGGATTAAAGTATTTT
AGTTTCTATGTGTCAGCTGATAAGAATCCAGTTCTGGTAGTAGATCAACTTTAAAAAAAG
TAGACTCACATCCTGCACATTGGCTAAGTTCTGGAAACAGCATCTGGTTTCTATACACTG
CAATAAAGCATATAGGAGCAGTGTTGTATAGTAGTTTTTATTTAAATTTGGAAGAAAGGA
TGAGGCACTGGTGGGATTCATCCGATTACTAAAAATAGAAGAGTTTGAATGAACCATTTC
CCGAATTGTTTTAAAATCAAACTTTTCCTTCATTCCTGATGGAGTAGAGATTTGTAATTC
TCCTTATCAATTTCAAATCAAAAGAACCCGCACCTCCCTTTAGATTCAGAAAGTTACTTT
TTGGATTGGATTGAATTGTTTTTTTCGTGCCTAAACCCTCTGACTTCTGTTTATATTTCA
GCACACATAACTTAGCGAGACTTGTGAGTCCACTGTTGTCCCTTAGTGTTAATCGTTCAG
TCCGATAAACCATTTTTTATGACGAGTGATTTCCCACAAATATAGATTTTACAAATGTAG
CTGAGAAAGAGTTTTGTGTGAATGAAAACCAGACAGTTTCCGTAAATCTTACGGTTAGTA
TCCTTACAGCGACATTTTCTTGCTGGTGCTCATAATCTTACAAATGGTATGTGTAAGAAA
TTATGTTATAACAAATCCGTAAGAATTCGTATTCTGTGAGAAATTGTTGCATACCCATGC
AGATAGATTAACACTCTACAAGCGGATAACATTTCGAGAACTTGTTTGATACTGGTTAAT
TTCAATGTTTAATTCGTTATTTGACTTGCGAACTACTTTGAATGTTTTGCATTGTAGATA
AAAGACAGCAGGTTTTGTCTTAAATCATCTTTCTGTGTTTTCGCTCTCGACGTTTTTATT
AACCTTTGAAGTATTATTCGTTCTTTATTTTATCATACGCAATATGGTAATCGTAAGATA
TAATCGAGTGTATTGTAGAGGTTAATTTTTCAATATCGTCATAGTAGTCATGACTGACAT
ATGAATTTTACTTTTCATATTATTGGCACATAATAGATCTATAGCTGTATACGTCTTTCT
TAAAAAATAATATGATGCAGAATGGAAGAACTGCATAATGTTTATTGTCGAACCTGTGTG
ATGACTTAACTCAGAACCTCCCAAACTTTTCCAGTTGGTGAC
| Gene3D |
LRR_dom_sf (IPR032675) - T[2-133] 1.1E-29 - T[142-355] 3.4E-66 - T[367-583] 2.7E-61 - T[590-776] 1.1E-51 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[22-44] 26.0 - T[45-68] 5.4 - T[170-194] 70.0 - T[195-218] 5.6 - T[219-242] 0.16 - T[243-266] 1.6 - T[267-290] 0.014 - T[421-444] 7.1E-4 - T[446-468] 330.0 - T[469-492] 3.7 - T[493-516] 0.012 - T[643-666] 0.0059 - T[667-690] 2.4 - T[691-714] 7.4E-4 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[23-44] 6.888 - T[47-68] 7.835 - T[197-218] 7.558 - T[221-242] 5.302 - T[245-266] 5.471 - T[269-290] 7.042 - T[398-419] 4.624 - T[423-444] 8.028 - T[447-468] 4.924 - T[471-492] 6.68 - T[495-516] 6.88 - T[622-643] 5.101 - T[645-666] 8.143 - T[669-690] 6.295 - T[693-714] 6.703 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[24-81] 1.9E-7 - T[174-232] 1.4E-12 - T[245-303] 2.7E-10 - T[669-720] 2.4E-10 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[80-129] 3.7E-12 - T[302-351] 1.6E-8 - T[528-577] 8.5E-11 - T[726-775] 3.9E-13 |
| Pfam |
Cys-rich_flank_reg_C (IPR000483) - T[105-128] 0.44 - T[327-350] 1.5 - T[552-576] 1.9E-5 - T[751-775] 0.0062 |
| SMART |
LRRNT (IPR000372) - T[144-176] 1.0E-6 - T[369-401] 7.9E-6 - T[592-625] 4.1E-4 |
| Pfam |
LRRNT (IPR000372) - T[145-171] 6.6E-6 |
| Pfam |
LRR_5 (IPR026906) - T[416-527] 3.4E-12 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[785-822] 0.022 - T[824-861] 9.0E-4 - T[863-900] 5.9E-10 - T[904-944] 0.25 - T[946-985] 0.34 - T[996-1035] 0.23 - T[1300-1334] 0.0063 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[787-822] 18.348 - T[824-861] 20.108 - T[863-900] 20.811 - T[903-944] 17.304 - T[946-985] 15.889 - T[996-1035] 18.356 - T[1210-1253] 8.273 - T[1259-1297] 14.433 - T[1298-1334] 17.213 |
| SMART |
EGF-like_dom (IPR000742) - T[788-822] 2.0E-5 - T[827-861] 3.8E-7 - T[866-900] 1.6E-6 - T[906-944] 3.0E-6 - T[949-985] 0.0084 - T[999-1035] 1.3E-5 - T[1213-1253] 0.91 - T[1262-1297] 1.7E-5 - T[1301-1334] 2.5E-5 |
| Pfam |
EGF-like_dom (IPR000742) - T[789-820] 1.3E-7 - T[828-857] 3.0E-5 - T[910-941] 1.5E-4 - T[1263-1293] 1.2E-4 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[810-821] . - T[810-821] . - T[849-860] . - T[849-860] . - T[888-899] . - T[888-899] . - T[932-943] . - T[932-943] . - T[973-984] . - T[1023-1034] . - T[1023-1034] . - T[1241-1252] . - T[1241-1252] . - T[1285-1296] . - T[1285-1296] . - T[1322-1333] . - T[1322-1333] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[863-888] . |
| Pfam |
EGF-like_CS (IPR013032) - T[876-894] 6.7E-8 - T[1005-1029] 0.0012 - T[1307-1328] 0.012 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[879-890] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[1022-1214] 7.52E-28 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[1038-1214] 31.699 |
| SMART |
Laminin_G (IPR001791) - T[1059-1188] 1.1E-20 |
| Pfam |
Laminin_G (IPR001791) - T[1068-1188] 4.6E-17 |
| ProSiteProfiles |
Cys_knot_C (IPR006207) - T[1340-1461] 10.144 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 43.851 % | 1184 | 0 |
| SLIT3_HUMAN | 43.177 % | 1202 | 0 |
| SLIT2_HUMAN | 44.467 % | 1226 | 0 |