- Transcript 'KH2012:KH.C8.640.v2....' >
- Transcript 'KH2012:KH.C3.101.v2....' >
- Transcript 'KH2012:KH.C6.158.v1....' >
- Transcript 'KH2012:KH.C6.158.v2....' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S254.g08686.01.t
Possible name(s)
RNF144A; RNF19A; RNF19B
Gene model
Location
S254 [106,358 / 122,214]
Amino acid sequence
Length: 830
>Harore.CG.MTP2014.S254.g08686.01.p
MSASEDAVSQSSKKRKHNRRRRFFRFFRFSHCNAKGQYKHDELAAGNGSSVEGLQVTSSL
SGDSASLGMSSRADALTIGSMQSENAASAYGGASASTHSQVGESRYKPESASTEPTHLEC
PLCLNVQVSENYPRLMTCSHRSCIDCLRQYLMIEITESRVNVTCPECQERIHPVDMQLIL
KNSPNLIEKWEEFTLRRCLSVDPDCRWCPAPDCGFAVIAHGCASCPKLHCDKSGCNTDFC
YHCRQEWHPNQTCDAAHLQRTKQFRLRSNSVAYSQGSSLNDQIKPCPKCGALIAKMNDGS
CNHMTCTVCEAEFCWLCLQEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGLLIGAPLGI
GLVAGVAVPAIVIGLPIWVARQVMAQFANRTSSKHKRNSAVALCVMLSVVVSPLLAALAV
GVGVPVMLLYVYGVVPFSLCRTGSYGISARNAAIRARSAMRIECGNPVVPAPSSGKVSYE
VNSLPEPSANNGIRQTITNPSIGETSVGGLTMASLTESHASNNDRADGDGASTTAIAGAS
ITGSITGSMAAFVEASSTRVKDNEPGTSLASNGINSAVTSVQVHMQDNVSVHSTSSYAPS
SSSTASKSFSSKSLGAKRKSSKSGKIKAPRKSSVPKKISEQEESKISAESSTATTVMFTN
HSDITASKSLAQSTIVNISNTSKTCKTVSKPVVIDIEKEPVSSTVTIKVFNDDTSCASDE
TSSCGSQNALLDGTKCKDSSGTTYTEEVPTVTNDECTSSKAGPEVSAYECMKLDMIPQLC
TRINQCVIDIDCLLPSWKLLVPTFISILSISIHVCTTLTDFFTATLHLLD
Nucleotide sequence
Length: 3,742
>Harore.CG.MTP2014.S254.g08686.01.t
AGAATTCCTACCATTAGTTAGACATACAACCTATCTATACCGGTAATATAAAAACATATA
TACGTGAAGTTGTCTACTGTCACCCAAGAGGATGTCAGCAAGTGAAGATGCAGTCAGCCA
GAGCAGTAAAAAACGGAAACATAATAGAAGAAGACGCTTTTTCAGATTTTTCAGATTTTC
ACACTGTAATGCAAAGGGACAATACAAACACGATGAACTAGCTGCAGGAAATGGCTCGAG
TGTCGAAGGATTACAAGTGACGTCCAGCTTGTCAGGCGACTCCGCTTCCTTGGGTATGTC
ATCTCGTGCCGACGCATTAACTATAGGCAGCATGCAGAGCGAGAATGCAGCTTCTGCATA
CGGAGGTGCTAGTGCAAGCACTCACAGTCAAGTTGGTGAATCCAGATATAAACCAGAAAG
TGCTTCCACGGAACCAACACACCTTGAATGTCCGCTGTGTCTAAACGTGCAGGTTTCGGA
AAATTATCCACGACTAATGACATGCAGTCACAGATCTTGCATAGATTGCCTTCGGCAATA
TCTCATGATTGAAATTACAGAAAGCAGGGTGAATGTTACTTGTCCTGAATGCCAGGAGAG
AATACATCCAGTTGATATGCAGTTAATACTTAAAAATTCTCCAAATCTCATTGAAAAATG
GGAAGAATTCACTTTGAGGCGTTGCCTCTCGGTTGATCCAGATTGCAGGTGGTGTCCGGC
TCCAGACTGTGGATTTGCTGTGATTGCCCACGGATGTGCCAGCTGCCCAAAATTACACTG
TGATAAGTCGGGATGTAACACCGACTTTTGTTATCATTGTAGACAGGAATGGCATCCAAA
TCAAACATGTGATGCTGCCCACCTTCAGCGGACCAAGCAATTTCGATTAAGAAGTAATTC
CGTGGCGTACAGCCAAGGGTCTTCTCTTAATGACCAAATAAAGCCGTGTCCGAAATGTGG
AGCTCTAATTGCCAAGATGAATGATGGATCGTGCAATCACATGACCTGCACTGTATGCGA
GGCAGAATTTTGCTGGCTCTGCCTACAAGAAATTTCTGATCTACATTACTTAAGTCCGTC
CGGATGTACATTCTGGGGGAAGAAACCATGGAGTAGGAAGAAGAAAATCCTTTGGCAACT
CGGCCTTCTAATCGGAGCTCCCTTGGGTATAGGGCTAGTCGCCGGCGTTGCTGTTCCGGC
AATCGTCATTGGCCTTCCTATATGGGTAGCCAGACAGGTCATGGCACAGTTTGCAAATCG
GACTTCTTCGAAACACAAAAGGAACTCAGCAGTTGCTCTATGTGTCATGCTTTCTGTTGT
GGTATCACCACTTCTGGCAGCTTTGGCCGTTGGTGTCGGCGTGCCTGTCATGCTTCTCTA
TGTGTATGGTGTTGTACCATTTTCTCTGTGTCGTACCGGAAGTTATGGCATATCTGCCCG
CAATGCAGCTATACGAGCCAGGTCTGCCATGAGAATAGAGTGTGGAAATCCCGTTGTTCC
TGCACCAAGCAGCGGAAAAGTAAGCTATGAGGTGAACAGCCTTCCGGAACCGTCCGCCAA
TAATGGAATTCGGCAAACTATCACAAATCCAAGTATAGGAGAAACCAGTGTCGGCGGACT
TACTATGGCAAGTTTAACCGAATCCCATGCAAGCAACAATGATCGAGCAGATGGAGATGG
GGCAAGTACTACAGCTATTGCTGGTGCAAGTATAACGGGCAGTATAACAGGAAGCATGGC
AGCATTCGTTGAGGCTTCAAGCACTCGTGTCAAAGACAACGAACCAGGTACTTCTCTTGC
TTCCAATGGCATCAACTCAGCTGTAACATCAGTTCAGGTCCACATGCAAGACAATGTGTC
TGTCCATAGTACATCCAGTTACGCTCCCTCCAGTAGCAGCACTGCAAGCAAGTCTTTCTC
TTCAAAATCACTGGGAGCCAAAAGAAAATCTAGCAAATCTGGAAAAATAAAAGCGCCACG
TAAATCTTCCGTCCCAAAAAAGATTTCGGAGCAGGAGGAATCCAAGATATCAGCGGAATC
ATCCACTGCAACAACCGTAATGTTTACAAATCATTCGGACATCACTGCCAGCAAATCCCT
TGCGCAATCAACAATTGTGAATATTTCAAACACAAGTAAAACGTGTAAAACAGTTAGTAA
GCCAGTAGTAATTGATATTGAGAAGGAGCCAGTTTCTTCCACTGTTACCATTAAGGTTTT
TAACGACGATACGTCCTGTGCAAGTGACGAAACCAGCAGTTGTGGGAGCCAAAATGCTTT
ATTGGATGGCACAAAATGCAAGGATTCATCCGGAACAACATATACTGAAGAAGTCCCGAC
TGTCACCAATGATGAATGTACTTCTAGTAAAGCAGGGCCGGAGGTAAGTGCATATGAGTG
TATGAAACTTGACATGATTCCACAACTCTGCACTAGGATCAATCAATGCGTTATTGACAT
TGATTGTCTATTACCCTCATGGAAATTGCTTGTGCCAACATTTATTAGCATTCTGTCTAT
TTCAATTCATGTCTGTACCACATTAACTGACTTTTTTACTGCAACTCTTCACCTGCTTGA
TTAGGCTAGATTTCCCATTAGGTTATGTGGCTAAGATATCATAGATAGGTTGTGGGCAAG
GGATGATGGAATTTGTTAAATCAAAATGGAATACAGTACACTGGAGCTACCGTATTTCAC
TAAGTATAATCCGCATCTGCCAAATGAGATTTTGAATGAAAAATGCTTGAAATTTTTAAT
AAAATGCAGTTGGTCATTGCTACATATAAGGTCTGATAAGCTAGTTATTTAAGCGGGCTC
TTGTTTGTCGAGAGGCTAGTGCTAGTGCTATTCACACATATGTATTTTTCAAATTAGCTA
TAGCTATTGTCCAATTATTGTCTCTCGGCTAGCCAGGAATAATTAATTTCATATTTCTTA
AACAGTAGTAAATAAACCTGCATTGAAAAACCGTTCTTAAATCGAATGTAACCATGAGAT
TTATTGTATTACGGTTGTACAAAATAATCCTGGGATTTTCTTGTCCATAGGTAAATTAAA
TAAGTCTTTACAAGTGCAATGTATCGTCTACAGTTCTAGTATTATTTTGCCACCTTATTA
CTGTATATATATATAGCAGAACTGATTCTGTTGAACGGTCAGTTCCAAGTTCTTGCTCTA
GAGCCCTCTACTCTTTCTTTCCGTGCTAACAGTATTTATTACCTGTTTGCCGTTAATTTT
CTTTCTAGATCTTCATATTGTGATATTTTTCTATTCCCTGTTCACTTTTCTGTATCTGTT
ACATTTTTGTGCTTAGCCCACCTTTGTAATGGTTACAAGCCCACCTAACTATTATATCCG
ACGTCCTTACTATTCATTCATTGGGAAACCTGCCTATGGTGCCGCTTTCTTGATTCCATT
AATTTGTGTTATGACAGAATTATATCTGTCGCATTTCAATTCTTAATAAATGTTGCTTAA
GTTAGCAACTTCGTGTTGCCCTTTTTGTTATGTACAGGATGAATTTATTACTGAGGAGAA
CTCATCAGCCAGTTTGTTGTGATGTCATCAAGAAATGTAATGCACTATTTACGTTTGTTT
TATCGAATGTAGAGACTTGGGGTCAAAATCTGCGAATTATCATGTTTTTTTTCTGACAGT
TAAAAGTTTAAATTTCAGTTGAAGATTTTTCATGAACAACCAATAGAAACAAATATAATG
CTTTGGAAGTTTTCAATAGAAC
| PANTHER |
E3_UB_ligase_RBR (IPR031127) - T[78-549] 1.6E-148 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[115-201] 5.3E-14 |
| SMART |
Znf_RING (IPR001841) - T[120-167] 2.6E-5 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[120-168] 11.294 |
| Pfam |
Znf_C3HC4_RING-type (IPR018957) - T[120-167] 9.7E-6 |
| Pfam |
IBR_dom (IPR002867) - T[188-253] 8.1E-12 - T[280-325] 1.1E-8 |
| SMART |
IBR_dom (IPR002867) - T[188-253] 2.2E-20 - T[271-332] 0.0085 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| R144A_HUMAN | 25.704 % | 88.2 | 4.35E-19 |
| RN19A_HUMAN | 57.596 % | 534 | 2.65E-178 |
| RN19B_HUMAN | 54.897 % | 508 | 9.27E-170 |