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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S258.g01897.01.t

Possible name(s)

RASSF1; RASSF3; RASSF5

Location

S258 [97,281 / 105,285]

Sequences

Amino acid sequence

Length: 553

>Harore.CG.MTP2014.S258.g01897.01.p
MPFTKPVETPSTGKLTPNERRNLRKHVDILSNKSGPKKQNDKLVGRSAPVSRPSDVAKQQ
VQTPYGATKNGGLKPTTNSRPSSAYSKPPSPWQRDKQADKPPTFQNNKSRPTSGFHQQQR
TNSPAGNASAVQQRSNSPAGNASAVAARNRSRTTIGDSTNIPNTKVQSNGSRARSTSSPK
PVQAVKPNIKPEQRSNEKLAVSYNSGSSSVAMPQIKETKATLKKDEQVEKVVKKDDKLLA
VVPKRSRAHVMPQSSTSKPKKKGHDFHPHELTDWVNWCDACGSIILSLFGKCVQCKKCKM
VCHLKCAETVSLTCEADAARGIDPSWYKTIVEETKDEATLKEYNTITRVLPQEEIKEKIE
AFNKTVKSTQQMTLQEDGETFRGFIRVTMNLTRPVSVNSDKPASKLQRNDSFYVSKGAVK
ALYLSSNTTAEEVVSALLNKYGIRDNPLKFALYEKQFREEGHIILRKMMTRERPLFLRLL
WGDGNTQQHAFILQENESREIQWESFSVPELNTFLKILEKEQNDHIKCIRTKFDSRRQDM
VNAMKHRKKMGLI

Nucleotide sequence

Length: 2,735

>Harore.CG.MTP2014.S258.g01897.01.t
AGTAGATCTGTTTTTTCCATGCTAAACACCTTAAATTTCCAGTAAATGCGAAGGAAACAA
AGGCAAGTGTCGCTGTTCAAAATAAAACTGGAGCGTAATAAAGATGCCGTTCACCAAACC
GGTTGAAACACCGTCCACGGGAAAATTGACACCAAACGAACGGAGAAATCTACGAAAACA
TGTTGATATACTTTCAAATAAATCAGGACCTAAGAAACAAAATGATAAATTAGTCGGTCG
GTCTGCTCCTGTGTCTCGTCCTAGTGATGTGGCAAAACAGCAAGTACAAACCCCGTATGG
AGCTACAAAGAATGGAGGATTAAAACCAACTACGAACTCACGACCTTCATCAGCATACAG
TAAACCACCATCACCTTGGCAACGAGATAAACAAGCAGATAAACCGCCGACCTTTCAGAA
TAATAAATCTAGACCAACTAGCGGTTTTCATCAGCAACAGAGGACTAATTCACCTGCTGG
AAATGCATCGGCAGTTCAACAGAGGTCAAATTCACCTGCTGGAAATGCATCGGCAGTTGC
CGCAAGAAATCGATCAAGAACTACAATTGGAGATAGCACTAATATTCCTAATACGAAAGT
TCAATCGAATGGATCCCGTGCACGATCAACATCATCACCGAAACCCGTTCAAGCAGTGAA
ACCAAACATTAAACCAGAGCAGAGGTCGAACGAGAAACTCGCTGTGTCGTATAATTCCGG
AAGCTCGTCGGTTGCGATGCCGCAAATCAAAGAAACGAAAGCAACTTTGAAGAAGGATGA
ACAGGTTGAAAAAGTTGTGAAGAAAGATGATAAATTATTGGCTGTTGTACCGAAACGTTC
ACGAGCACATGTGATGCCTCAGTCAAGTACTTCGAAGCCTAAAAAGAAAGGTCACGACTT
TCACCCCCATGAACTCACGGATTGGGTTAATTGGTGCGATGCGTGCGGAAGCATAATTCT
CTCGTTATTTGGAAAATGTGTACAATGTAAAAAATGTAAAATGGTTTGCCATCTCAAATG
TGCCGAAACTGTATCGCTGACGTGCGAGGCTGATGCTGCTCGCGGAATCGATCCATCTTG
GTATAAAACAATTGTTGAGGAAACAAAAGATGAAGCTACATTGAAGGAATACAACACAAT
CACACGAGTTTTGCCGCAAGAGGAAATCAAAGAAAAAATTGAAGCCTTCAATAAAACTGT
GAAAAGCACACAGCAAATGACACTGCAAGAGGATGGGGAAACATTTCGTGGTTTCATCCG
TGTCACAATGAATCTCACGCGTCCAGTCAGTGTTAACAGTGATAAGCCAGCCAGTAAACT
TCAGAGAAACGATTCCTTCTACGTTAGTAAGGGTGCAGTGAAAGCTTTGTATCTAAGTTC
CAATACAACCGCTGAAGAAGTCGTCTCTGCCTTGTTAAATAAATATGGAATTCGAGATAA
TCCACTGAAATTCGCTCTCTATGAGAAGCAATTTCGCGAAGAAGGTCACATCATTCTTCG
TAAAATGATGACCCGCGAACGACCTCTGTTTCTAAGGTTACTGTGGGGCGACGGCAACAC
ACAGCAGCACGCATTCATATTGCAGGAGAACGAGTCAAGAGAGATACAGTGGGAATCGTT
CTCAGTTCCCGAACTCAACACATTCCTTAAAATTCTCGAAAAAGAACAAAACGATCACAT
CAAATGCATCAGGACGAAATTCGACAGCAGAAGACAGGACATGGTTAATGCTATGAAACA
CAGGAAAAAAATGGGTTTGATTTAATGACATCATCTAAGTCAAAATTATGACATAACTAT
GAAATTATTACGTAATCATGAACGGTAGAACTATCCTTAATGGTGGCATTATACCTCAAT
AGTAGAAAAAAGCATCTTATTTCAAGAGTCACTCATTAGTTCCCGATAGCTTTTCAGTAT
GGCATTTTCCCACAACCTTAACTTCGTACTTGCTAGACTTCGAACGAGAAATTCATGAGA
AATTTCATTCAGAGTTCTGGTCCTATGTTTGAACTGCGTGCAAACTTAAAAAATGTACTT
CGATGTGTAAAGTACAGTTGTGATTGATGTGCTGTCGAATTTGACGTGAAATTGACACTT
TCATGAACATCATTTTGGCAGAACTTATTCGAGTCTTGAGCCAAGTTGCTTCATGTTTTC
TGTCAATCCTTAAGCAACAACATCATGCTTTGTCTTTCCAAGTCGGTCATCCATATTATA
GTCTATCCACTGCTAGTAAATGGCATTCCTTTATAAGAATTCAAATATTGCAGGCTCACA
CTGAACTTCAATGGTGACTAAAATAGACCATTGTGAGTTTCAAGATCTCTGTCTAATTTG
GTCATGAAGTTCTTCGTCTGCCTTGCTAGTACTGTACAGTGCGTCACCCTTATGGTGTTA
TTTCATCAGTTGTTAAATGTTCCAATATTATTATGTAATGAAAGCTGAATCCTGAGTAGA
CATGGCACTATGTTGGAATATTTTGAGTGTTTTATAGTGAGATTTGATTGGTTACTATAT
TTGACCCCTAGTCTTGCCAGTCCATTCCACCAACATATTGTTGTTTACTCAAGGGTAATA
CTAAGCTTGCAACAGGGAATTATACAATCATTCAGGCTTCTGCTGCTGTAGGCTGTGATG
CAAATGGAACATTTGAGTAGATGCTCCAGGACAGTGGTTCCCAGGGGGCAACGAACACAT
TTTCAGCAGGTCACAGAGCTATTTTGAACAGACTA

InterProScan

PANTHER
C-RASSF (IPR033614) - T[150-150] 1.8E-68 - T[260-546] 1.8E-68
ProSiteProfiles
PE/DAG-bd (IPR002219) - T[263-314] 11.599
CDD
PE/DAG-bd (IPR002219) - T[264-314] 2.36786E-9
Pfam
PE/DAG-bd (IPR002219) - T[264-316] 1.9E-6
SMART
PE/DAG-bd (IPR002219) - T[264-314] 4.1E-6
ProSitePatterns
PE/DAG-bd (IPR002219) - T[264-314] .
SMART
RA_dom (IPR000159) - T[402-498] 6.5E-6
ProSiteProfiles
RA_dom (IPR000159) - T[402-498] 14.22
Pfam
RA_dom (IPR000159) - T[416-497] 1.0E-12
SUPERFAMILY
Ubiquitin-like_domsf (IPR029071) - T[418-496] 9.3E-9
ProSiteProfiles
SARAH_dom (IPR011524) - T[500-547] 13.175
Pfam
SARAH_dom (IPR011524) - T[506-544] 6.9E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RASF5_HUMAN 35.333 % 193 6.49E-56
RASF1_HUMAN 38 % 190 1.42E-55
RASF3_HUMAN 37.879 % 125 9.21E-33