- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S258.g01897.01.t
Possible name(s)
RASSF1; RASSF3; RASSF5
Gene model
Location
S258 [97,281 / 105,285]
Amino acid sequence
Length: 553
>Harore.CG.MTP2014.S258.g01897.01.p
MPFTKPVETPSTGKLTPNERRNLRKHVDILSNKSGPKKQNDKLVGRSAPVSRPSDVAKQQ
VQTPYGATKNGGLKPTTNSRPSSAYSKPPSPWQRDKQADKPPTFQNNKSRPTSGFHQQQR
TNSPAGNASAVQQRSNSPAGNASAVAARNRSRTTIGDSTNIPNTKVQSNGSRARSTSSPK
PVQAVKPNIKPEQRSNEKLAVSYNSGSSSVAMPQIKETKATLKKDEQVEKVVKKDDKLLA
VVPKRSRAHVMPQSSTSKPKKKGHDFHPHELTDWVNWCDACGSIILSLFGKCVQCKKCKM
VCHLKCAETVSLTCEADAARGIDPSWYKTIVEETKDEATLKEYNTITRVLPQEEIKEKIE
AFNKTVKSTQQMTLQEDGETFRGFIRVTMNLTRPVSVNSDKPASKLQRNDSFYVSKGAVK
ALYLSSNTTAEEVVSALLNKYGIRDNPLKFALYEKQFREEGHIILRKMMTRERPLFLRLL
WGDGNTQQHAFILQENESREIQWESFSVPELNTFLKILEKEQNDHIKCIRTKFDSRRQDM
VNAMKHRKKMGLI
Nucleotide sequence
Length: 2,735
>Harore.CG.MTP2014.S258.g01897.01.t
AGTAGATCTGTTTTTTCCATGCTAAACACCTTAAATTTCCAGTAAATGCGAAGGAAACAA
AGGCAAGTGTCGCTGTTCAAAATAAAACTGGAGCGTAATAAAGATGCCGTTCACCAAACC
GGTTGAAACACCGTCCACGGGAAAATTGACACCAAACGAACGGAGAAATCTACGAAAACA
TGTTGATATACTTTCAAATAAATCAGGACCTAAGAAACAAAATGATAAATTAGTCGGTCG
GTCTGCTCCTGTGTCTCGTCCTAGTGATGTGGCAAAACAGCAAGTACAAACCCCGTATGG
AGCTACAAAGAATGGAGGATTAAAACCAACTACGAACTCACGACCTTCATCAGCATACAG
TAAACCACCATCACCTTGGCAACGAGATAAACAAGCAGATAAACCGCCGACCTTTCAGAA
TAATAAATCTAGACCAACTAGCGGTTTTCATCAGCAACAGAGGACTAATTCACCTGCTGG
AAATGCATCGGCAGTTCAACAGAGGTCAAATTCACCTGCTGGAAATGCATCGGCAGTTGC
CGCAAGAAATCGATCAAGAACTACAATTGGAGATAGCACTAATATTCCTAATACGAAAGT
TCAATCGAATGGATCCCGTGCACGATCAACATCATCACCGAAACCCGTTCAAGCAGTGAA
ACCAAACATTAAACCAGAGCAGAGGTCGAACGAGAAACTCGCTGTGTCGTATAATTCCGG
AAGCTCGTCGGTTGCGATGCCGCAAATCAAAGAAACGAAAGCAACTTTGAAGAAGGATGA
ACAGGTTGAAAAAGTTGTGAAGAAAGATGATAAATTATTGGCTGTTGTACCGAAACGTTC
ACGAGCACATGTGATGCCTCAGTCAAGTACTTCGAAGCCTAAAAAGAAAGGTCACGACTT
TCACCCCCATGAACTCACGGATTGGGTTAATTGGTGCGATGCGTGCGGAAGCATAATTCT
CTCGTTATTTGGAAAATGTGTACAATGTAAAAAATGTAAAATGGTTTGCCATCTCAAATG
TGCCGAAACTGTATCGCTGACGTGCGAGGCTGATGCTGCTCGCGGAATCGATCCATCTTG
GTATAAAACAATTGTTGAGGAAACAAAAGATGAAGCTACATTGAAGGAATACAACACAAT
CACACGAGTTTTGCCGCAAGAGGAAATCAAAGAAAAAATTGAAGCCTTCAATAAAACTGT
GAAAAGCACACAGCAAATGACACTGCAAGAGGATGGGGAAACATTTCGTGGTTTCATCCG
TGTCACAATGAATCTCACGCGTCCAGTCAGTGTTAACAGTGATAAGCCAGCCAGTAAACT
TCAGAGAAACGATTCCTTCTACGTTAGTAAGGGTGCAGTGAAAGCTTTGTATCTAAGTTC
CAATACAACCGCTGAAGAAGTCGTCTCTGCCTTGTTAAATAAATATGGAATTCGAGATAA
TCCACTGAAATTCGCTCTCTATGAGAAGCAATTTCGCGAAGAAGGTCACATCATTCTTCG
TAAAATGATGACCCGCGAACGACCTCTGTTTCTAAGGTTACTGTGGGGCGACGGCAACAC
ACAGCAGCACGCATTCATATTGCAGGAGAACGAGTCAAGAGAGATACAGTGGGAATCGTT
CTCAGTTCCCGAACTCAACACATTCCTTAAAATTCTCGAAAAAGAACAAAACGATCACAT
CAAATGCATCAGGACGAAATTCGACAGCAGAAGACAGGACATGGTTAATGCTATGAAACA
CAGGAAAAAAATGGGTTTGATTTAATGACATCATCTAAGTCAAAATTATGACATAACTAT
GAAATTATTACGTAATCATGAACGGTAGAACTATCCTTAATGGTGGCATTATACCTCAAT
AGTAGAAAAAAGCATCTTATTTCAAGAGTCACTCATTAGTTCCCGATAGCTTTTCAGTAT
GGCATTTTCCCACAACCTTAACTTCGTACTTGCTAGACTTCGAACGAGAAATTCATGAGA
AATTTCATTCAGAGTTCTGGTCCTATGTTTGAACTGCGTGCAAACTTAAAAAATGTACTT
CGATGTGTAAAGTACAGTTGTGATTGATGTGCTGTCGAATTTGACGTGAAATTGACACTT
TCATGAACATCATTTTGGCAGAACTTATTCGAGTCTTGAGCCAAGTTGCTTCATGTTTTC
TGTCAATCCTTAAGCAACAACATCATGCTTTGTCTTTCCAAGTCGGTCATCCATATTATA
GTCTATCCACTGCTAGTAAATGGCATTCCTTTATAAGAATTCAAATATTGCAGGCTCACA
CTGAACTTCAATGGTGACTAAAATAGACCATTGTGAGTTTCAAGATCTCTGTCTAATTTG
GTCATGAAGTTCTTCGTCTGCCTTGCTAGTACTGTACAGTGCGTCACCCTTATGGTGTTA
TTTCATCAGTTGTTAAATGTTCCAATATTATTATGTAATGAAAGCTGAATCCTGAGTAGA
CATGGCACTATGTTGGAATATTTTGAGTGTTTTATAGTGAGATTTGATTGGTTACTATAT
TTGACCCCTAGTCTTGCCAGTCCATTCCACCAACATATTGTTGTTTACTCAAGGGTAATA
CTAAGCTTGCAACAGGGAATTATACAATCATTCAGGCTTCTGCTGCTGTAGGCTGTGATG
CAAATGGAACATTTGAGTAGATGCTCCAGGACAGTGGTTCCCAGGGGGCAACGAACACAT
TTTCAGCAGGTCACAGAGCTATTTTGAACAGACTA
| PANTHER |
C-RASSF (IPR033614) - T[150-150] 1.8E-68 - T[260-546] 1.8E-68 |
| ProSiteProfiles |
PE/DAG-bd (IPR002219) - T[263-314] 11.599 |
| CDD |
PE/DAG-bd (IPR002219) - T[264-314] 2.36786E-9 |
| Pfam |
PE/DAG-bd (IPR002219) - T[264-316] 1.9E-6 |
| SMART |
PE/DAG-bd (IPR002219) - T[264-314] 4.1E-6 |
| ProSitePatterns |
PE/DAG-bd (IPR002219) - T[264-314] . |
| SMART |
RA_dom (IPR000159) - T[402-498] 6.5E-6 |
| ProSiteProfiles |
RA_dom (IPR000159) - T[402-498] 14.22 |
| Pfam |
RA_dom (IPR000159) - T[416-497] 1.0E-12 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[418-496] 9.3E-9 |
| ProSiteProfiles |
SARAH_dom (IPR011524) - T[500-547] 13.175 |
| Pfam |
SARAH_dom (IPR011524) - T[506-544] 6.9E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RASF5_HUMAN | 35.333 % | 193 | 6.49E-56 |
| RASF1_HUMAN | 38 % | 190 | 1.42E-55 |
| RASF3_HUMAN | 37.879 % | 125 | 9.21E-33 |