- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S25.g00282.01.t
Possible name(s)
TRPC3; TRPC4; TRPC5
Gene model
Location
S25 [72,859 / 78,383]
Amino acid sequence
Length: 841
>Harore.CG.MTP2014.S25.g00282.01.p
MEDFTASFRTRRLQPANSCKSSRQNSGQVDSFRLHGYHQNRTLSRDILDSIEIKYLQYAA
SGNVQAVKNLFTAYNQAQLNRNCIDYFERTALVLAIMNRQKEMIKYLLENEVELTESLYY
AVEMEYAEAVEIIVTSDNPRYISHKDIVIISEESTFPRFLSPIMLAAHKNNYEILDILYS
HGHTLVDLSKHASNKWDEMRLKWLFYKAHSSQAYLILMYYKNKIDPLNEAIELYGKLKIE
GRNARETLRTAQEVADLLRFRLFDHNLVKTGQLADSGITTIAGNSDDNIFTLMNMSNKDG
SLDSSSIPLDSGPSPDVPSRMQGLGKAKTLPSIQEQSPAQVVRAFTGNSEVNLKKQSSTL
PLVKGNNPDANSTLSPCQRRISSAIENVPKARHRSLGIRRPMTSAVDMEYVRPKDFLKPI
EKAVDNGMVRLVTSQNAQFALTYLKEGTLFRDSSWKKQWVLTILIATMFPFISVMFYLFP
TTKIGRVAKNPTAKFTMEELEGYQWSPIPLADIMITIVYVFVFLRPLEMLRVSLEGMMQD
VSKVFVIFLFIWFAFSSGITTLFARYYIPAVNQSYTGDSICQSRLLQHNGADHQEDIADS
NNFTCCFSDQRLSKLGSSLQVLFWSTFGYSENYMSWLDLRCTHEDRIQRGATTKFGEFVF
AFYHTAIVIVLVNMLIAIMSGTLQKAVDQNDEQWQFHRMRVWFRFIRTGFYRPPPMNIIL
RPGEIKFVFRVIYNGFRRFGRYLGGKYRSSQKGTHRSTEEYEMHHSNLMAGRNFSGISNN
AGLNKIKESNPHQSIGQRFSSDTSVEEPISRYNIALQKVVKRYLKVNVLFNKDKNSHDGE
H
Nucleotide sequence
Length: 2,526
>Harore.CG.MTP2014.S25.g00282.01.t
ATGGAAGACTTCACTGCTTCATTTCGGACCAGACGCTTGCAGCCTGCAAACAGTTGTAAA
AGTTCTAGACAAAACTCTGGTCAGGTGGATTCTTTTCGTCTGCATGGCTACCATCAAAAC
CGCACGCTTAGTCGTGATATACTGGATAGCATCGAAATAAAATATTTGCAATATGCCGCT
TCTGGCAATGTTCAGGCAGTGAAAAATCTATTCACCGCATACAACCAAGCACAACTGAAT
AGAAATTGCATCGATTATTTTGAAAGGACCGCCCTCGTTCTGGCAATCATGAACAGACAA
AAAGAAATGATAAAATATTTGCTGGAAAATGAAGTTGAGCTGACCGAATCGCTCTACTAC
GCCGTTGAAATGGAGTATGCCGAAGCGGTGGAGATAATTGTTACCTCCGATAATCCGCGA
TACATTTCTCACAAGGATATCGTTATAATAAGTGAGGAGTCGACCTTTCCGCGCTTTCTC
AGCCCCATTATGCTGGCAGCTCACAAGAATAACTACGAAATCCTGGATATACTTTACAGT
CACGGTCATACCCTTGTTGATTTATCTAAACATGCCAGCAACAAGTGGGATGAGATGCGT
CTGAAATGGCTTTTCTACAAAGCGCATTCCAGTCAAGCCTACTTGATTCTCATGTACTAC
AAAAATAAAATTGATCCATTAAACGAGGCGATCGAACTGTATGGAAAACTGAAAATCGAG
GGTCGGAATGCACGTGAAACGCTTCGCACAGCCCAAGAGGTCGCAGACCTACTGCGATTC
CGCCTATTCGACCACAACCTAGTAAAAACAGGTCAACTCGCCGATTCTGGAATCACAACG
ATCGCAGGCAACAGCGACGACAATATATTTACCTTGATGAACATGAGTAATAAAGATGGT
TCACTGGATTCCAGCTCAATCCCTTTGGATTCAGGGCCAAGCCCGGACGTTCCTTCGAGG
ATGCAGGGTTTAGGTAAAGCTAAAACTTTACCTTCCATTCAGGAACAGTCGCCGGCCCAA
GTCGTTCGTGCTTTCACTGGAAATTCGGAGGTGAATTTGAAGAAGCAGTCCTCCACATTA
CCGCTAGTCAAGGGAAACAATCCTGACGCGAATTCTACCTTATCGCCGTGTCAGCGCAGG
ATATCGTCGGCTATTGAAAACGTGCCAAAAGCAAGGCATCGAAGTTTGGGTATACGTCGA
CCAATGACCAGCGCTGTAGATATGGAATACGTGCGACCAAAAGACTTTCTTAAGCCAATT
GAAAAAGCGGTGGATAATGGCATGGTGAGACTGGTGACCAGTCAGAATGCACAGTTTGCT
CTCACTTATCTGAAAGAAGGAACTCTTTTTCGGGATTCGTCCTGGAAAAAGCAATGGGTT
TTAACTATCTTGATCGCTACTATGTTCCCATTCATCAGCGTTATGTTCTATCTTTTCCCA
ACGACTAAGATCGGACGGGTCGCTAAAAATCCGACGGCGAAGTTTACCATGGAGGAACTG
GAAGGGTATCAATGGTCACCTATCCCTCTGGCAGATATTATGATAACTATAGTTTACGTT
TTTGTGTTCTTGAGGCCTCTTGAAATGTTGCGCGTTTCCTTGGAGGGTATGATGCAAGAC
GTCTCCAAAGTGTTTGTTATATTTCTTTTCATCTGGTTCGCATTTTCGAGCGGAATCACC
ACGCTTTTTGCCAGATATTACATCCCGGCTGTCAACCAAAGCTACACTGGTGACTCTATT
TGTCAATCAAGGCTGCTACAACACAATGGGGCTGACCATCAAGAAGACATAGCTGACTCG
AATAATTTTACATGTTGTTTTTCGGATCAAAGACTATCTAAACTCGGTTCTTCGTTGCAA
GTTTTGTTTTGGTCTACATTTGGCTACAGCGAAAACTACATGAGCTGGTTAGACTTGAGA
TGCACTCACGAAGATAGAATCCAAAGGGGAGCAACTACCAAATTTGGAGAGTTTGTTTTT
GCTTTTTATCACACCGCAATCGTTATTGTCTTGGTGAACATGTTGATAGCAATCATGAGC
GGAACTTTACAGAAGGCTGTGGACCAGAATGACGAACAGTGGCAGTTTCATCGAATGAGG
GTATGGTTTCGCTTTATACGGACAGGATTCTACCGACCTCCTCCGATGAACATCATTCTA
CGACCTGGAGAAATCAAATTTGTATTTCGTGTTATCTACAATGGATTCCGAAGATTCGGC
AGATACCTTGGAGGTAAGTACCGAAGTAGTCAAAAAGGGACCCACCGATCAACTGAAGAG
TACGAGATGCATCACTCGAACCTCATGGCTGGAAGAAATTTCAGCGGAATCAGCAATAAC
GCGGGCCTCAACAAAATTAAGGAATCAAATCCTCACCAATCGATCGGTCAGAGATTTTCC
TCTGACACTTCGGTTGAGGAACCGATTTCTCGTTACAACATCGCTTTGCAGAAGGTAGTT
AAGAGGTATTTAAAAGTCAACGTATTGTTTAATAAAGACAAGAACTCTCATGATGGTGAG
CATTAG
| Gene3D |
Ankyrin_rpt-contain_sf (IPR036770) - T[35-340] 2.1E-12 |
| PANTHER |
TRPC_channel (IPR002153) - T[40-239] 5.5E-83 - T[417-498] 5.5E-83 - T[504-829] 5.5E-83 |
| SUPERFAMILY |
Ankyrin_rpt-contain_sf (IPR036770) - T[47-184] 4.97E-12 |
| Pfam |
Ankyrin_rpt-contain_dom (IPR020683) - T[56-135] 2.3E-7 |
| CDD |
Ankyrin_rpt-contain_dom (IPR020683) - T[82-182] 4.94591E-9 |
| SMART |
Ankyrin_rpt (IPR002110) - T[87-116] 0.11 - T[158-187] 20.0 |
| Pfam |
Ion_trans_dom (IPR005821) - T[506-687] 6.7E-8 |
| PRINTS |
TRPC_channel (IPR002153) - T[661-682] 1.1E-6 - T[683-696] 1.1E-6 - T[711-724] 1.1E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRPC5_HUMAN | 27.347 % | 94 | 1.58E-19 |