Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S25.g11189.01.t

Possible name(s)

MRPL4

Gene model

Harore.CG.MTP2014.S25.g11189

Location

S25 [62,347 / 63,307]

Sequences

Amino acid sequence

Length: 319

>Harore.CG.MTP2014.S25.g11189.01.p
MISVRSISLRNICQRIISRHMSESPTGKEKKRPHNIVMLGFDRHKAEPAKPVNFKVPEEC
PIVRQVKDCSRHRMPVRVFLDSYTSVEHKPVSAIELHPDVFADNPRIDFLHLCKQWQKNY
REVDYSWEPTRAEMGKGHKKPWPQKGLGKAQQGSSVGPHWKGGGIAHGPRGPKALYQEIL
PNVRLRSLTSALSIKYFQEDLFVLKDFEIPSAEQSYLENVLAARGMESKSVLLVFTEKDN
VKEADNICSAVKSWPQVNLIPLVGLNMWSILKHFKLVLTLSSVEELETKILWEKQRYDWI
DKPHNFYRDLPFEINNNVE

Nucleotide sequence

Length: 960

>Harore.CG.MTP2014.S25.g11189.01.t
ATGATTTCCGTGCGCAGTATAAGTTTGCGTAATATATGTCAGAGAATAATTTCAAGGCAC
ATGTCAGAGAGTCCCACAGGAAAGGAGAAAAAGCGGCCTCACAATATAGTGATGCTTGGA
TTCGATAGACACAAAGCAGAACCCGCTAAACCAGTTAACTTCAAAGTACCAGAAGAATGC
CCAATCGTTCGACAAGTCAAAGACTGTTCACGTCATCGTATGCCTGTTCGTGTATTTTTG
GATTCCTACACGAGCGTTGAACACAAGCCGGTATCTGCGATTGAATTGCATCCAGACGTA
TTTGCAGATAATCCAAGAATTGATTTTCTTCATTTGTGTAAGCAATGGCAGAAAAACTAC
AGAGAAGTAGATTATAGTTGGGAACCGACCAGGGCAGAAATGGGTAAGGGTCATAAAAAG
CCCTGGCCACAAAAAGGTCTAGGAAAAGCACAACAGGGTAGCTCTGTTGGACCGCACTGG
AAAGGTGGTGGAATAGCACACGGGCCTCGAGGACCCAAAGCGCTTTATCAAGAGATATTG
CCCAATGTACGACTTCGCTCTTTGACGAGTGCTCTGAGCATCAAGTACTTTCAAGAAGAT
CTGTTTGTTTTGAAAGACTTTGAGATACCTTCCGCAGAACAAAGCTATCTAGAAAATGTA
TTGGCTGCTCGAGGCATGGAAAGTAAGTCGGTGTTGCTGGTGTTCACAGAGAAAGACAAT
GTCAAGGAGGCGGACAATATATGTTCTGCAGTGAAGTCATGGCCCCAAGTAAACTTGATT
CCCCTTGTGGGCCTCAATATGTGGAGCATTCTCAAACATTTCAAGCTTGTATTGACACTG
TCATCGGTAGAAGAGCTGGAAACAAAAATTTTATGGGAAAAACAAAGATACGATTGGATT
GACAAGCCACATAACTTCTATCGTGATCTGCCATTTGAAATCAATAATAATGTTGAATAA

InterProScan

Gene3D	Ribosomal_L4_dom_sf (IPR023574) - T[61-311] 1.9E-58
PANTHER	Ribosomal_uL4/L1e (IPR013005) - T[79-309] 4.5E-58
SUPERFAMILY	Ribosomal_L4_dom_sf (IPR023574) - T[84-290] 4.58E-46
Pfam	Ribosomal_L4/L1e (IPR002136) - T[94-288] 8.3E-42

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RM04_HUMAN	41.797 %	194	5.7E-60