- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S25.g13757.01.t
Possible name(s)
THBS1; THBS2; THBS3
Gene model
Location
S25 [296,198 / 303,925]
Amino acid sequence
Length: 798
>Harore.CG.MTP2014.S25.g13757.01.p
MHGGKQCAGDSSQIESCNEKPCPIDTCRKSPCYRGVTCTPYDDGTFVCGSCPEGMQGDGI
KCIDIDECSLVPDACFHYEDKHRCQNQHGGYTCMPCPEGYKGTRPSGVGVEYATEHKQQC
KVSNPCTDGSNPCPGNSECIYLDPTMSPPFMCKCLPGFSACPSCRGLVCSEDSDLDGWPD
QEATCERENGTIICHKDNCPTLPNSGQENADKDEEGDACDSDDDDDGIQDARDNCPLSFN
PSQYDSDGDRVGDVCDNCPFLRNPGQIDTDGDGLGDDCDPDIDGDYILNGEDNCQYVSNK
EQKDGDLDGVGDECDNCPTVENRDQHDIDDDLVGDACDTNRDIDMDGWQDNRDNCPFVAN
SAQTDHDHDGIGDSCDPDDDGDGILDVDDNCVLIFNPDQLDTDGNGRGDVCEDDFDHDGV
ADFEDACYANAKIQKTDFSVFDRVKLDPSGTAQIDPNWVIRNKGKEIIQTINCDPGLAIS
RDTFEGVDFDGTFFVNTGNDDDYAGFVFGYQSSSRFYVLMWKQVTQSYWKSYPSHAMGMA
GLQLKVVESKTGPGEELRNALWHTGDTEGQVRTLWQDPTSQGWNNHNAYRWRLNHRPSTG
EIRVVMHNGKDLLVDSGRIVDKTYAGGRMGMFIFSQEMVFYSDMEYKCNDMNEVNCYRMI
TYFTHSVRAPTRNSASILLHSSDRSAALRTIRRILRADRLAYTHSGIGGCVLMIYLYLKK
SLAMIASFCIISHCTKYRTIVITFVITEHELPQKKSKNRRNDKKISSLLHFIVVFIFILD
SSCFLPPFASSFHFIYDH
Nucleotide sequence
Length: 2,397
>Harore.CG.MTP2014.S25.g13757.01.t
ATGCACGGAGGCAAGCAGTGTGCCGGCGACTCAAGTCAAATCGAAAGTTGCAACGAAAAG
CCATGTCCAATAGACACATGTCGGAAATCTCCGTGTTATCGTGGAGTTACATGTACTCCT
TATGACGACGGAACTTTTGTGTGCGGATCCTGTCCGGAAGGAATGCAGGGAGATGGAATT
AAATGCATTGACATCGACGAGTGCTCATTGGTACCAGACGCGTGCTTCCACTACGAAGAT
AAACACAGATGTCAAAATCAGCACGGAGGTTATACTTGCATGCCTTGCCCAGAAGGATAT
AAAGGGACAAGACCAAGCGGTGTTGGAGTGGAATATGCAACGGAACATAAGCAACAATGC
AAAGTATCCAACCCGTGCACTGACGGTTCAAACCCCTGTCCCGGAAATTCAGAATGCATC
TACCTGGATCCCACCATGTCGCCACCATTTATGTGCAAGTGTCTTCCTGGATTCTCTGCC
TGTCCGTCTTGCAGGGGATTAGTTTGCTCCGAAGATAGCGATTTAGACGGATGGCCTGAT
CAAGAGGCAACGTGTGAAAGGGAAAACGGAACCATAATATGTCATAAGGACAACTGTCCC
ACTCTGCCTAACAGCGGCCAAGAAAACGCAGATAAGGATGAAGAAGGAGACGCGTGCGAT
TCAGACGATGATGATGACGGAATTCAAGATGCCAGAGACAACTGTCCTCTTAGTTTCAAC
CCAAGTCAATACGACAGTGATGGAGACAGAGTGGGTGATGTCTGTGACAACTGCCCGTTT
TTGCGTAACCCAGGACAAATCGACACAGACGGTGACGGGCTAGGCGATGATTGTGATCCA
GATATTGATGGAGATTATATCCTTAACGGGGAGGATAACTGCCAATACGTCAGTAATAAG
GAGCAGAAGGATGGAGATTTAGATGGAGTCGGAGACGAGTGTGACAATTGTCCCACGGTT
GAAAACAGAGATCAGCACGATATTGATGACGATTTAGTCGGAGATGCTTGCGATACTAAC
AGAGACATAGATATGGATGGATGGCAAGACAACCGAGACAACTGCCCATTCGTAGCGAAC
AGCGCGCAAACAGACCATGACCACGACGGCATAGGTGACAGTTGCGATCCTGATGATGAT
GGCGATGGAATTTTGGACGTGGATGACAATTGTGTACTCATCTTCAATCCAGATCAATTA
GATACAGACGGAAACGGACGAGGAGACGTTTGCGAAGATGATTTTGATCACGACGGTGTG
GCGGACTTCGAGGATGCCTGTTACGCAAATGCAAAGATCCAAAAAACAGATTTCAGCGTT
TTCGACCGAGTCAAATTGGACCCTAGCGGCACTGCACAAATCGACCCAAATTGGGTGATA
AGAAACAAAGGCAAAGAAATCATTCAAACAATAAACTGCGATCCTGGTTTAGCTATTAGT
CGAGACACTTTCGAAGGCGTTGATTTTGACGGAACCTTCTTTGTCAACACTGGCAATGAC
GACGATTACGCCGGTTTCGTTTTCGGTTATCAATCGTCAAGCCGATTTTACGTTCTCATG
TGGAAGCAAGTCACACAGAGTTATTGGAAATCTTACCCAAGTCACGCTATGGGTATGGCT
GGTCTTCAACTCAAGGTTGTGGAATCAAAAACAGGACCGGGAGAAGAGCTACGAAATGCG
CTGTGGCATACTGGCGATACAGAAGGCCAGGTAAGAACATTATGGCAAGATCCAACATCT
CAAGGATGGAATAATCACAACGCTTACAGGTGGAGACTCAATCATAGACCGAGTACCGGT
GAAATCAGGGTTGTCATGCACAATGGAAAAGACCTTCTAGTTGACTCCGGTCGCATTGTC
GATAAAACATATGCCGGTGGACGCATGGGAATGTTCATCTTCTCACAAGAAATGGTATTT
TACTCCGACATGGAATACAAATGCAATGATATGAACGAGGTGAACTGTTATCGCATGATT
ACATACTTTACCCATTCTGTACGCGCGCCCACAAGAAATAGCGCTTCAATTTTACTCCAT
AGCTCGGACAGAAGCGCCGCATTAAGAACCATACGCCGAATACTACGCGCTGACAGGCTA
GCTTATACCCATTCCGGCATAGGAGGTTGTGTTCTCATGATCTATCTATATTTGAAGAAA
TCTTTAGCCATGATAGCTTCTTTTTGTATAATCTCACACTGTACAAAGTACAGGACAATT
GTAATAACCTTTGTAATTACAGAACACGAGTTACCACAAAAAAAATCGAAAAATCGCCGT
AATGATAAAAAGATATCTAGTTTACTTCACTTTATTGTCGTCTTCATATTTATTCTTGAT
TCAAGCTGCTTTTTGCCACCTTTCGCTTCCAGCTTTCATTTCATTTATGACCATTAG
| PANTHER |
Thrombospondin (IPR037349) - T[2-652] 0.0 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[13-63] 0.41 - T[64-121] 1.3E-4 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[23-63] 7.369 - T[64-106] 7.723 - T[122-162] 9.487 |
| SMART |
EGF-like_dom (IPR000742) - T[26-63] 0.19 - T[67-121] 13.0 - T[125-165] 2.7 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[64-103] 2.5E-8 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[166-255] 2.0E-21 - T[256-314] 1.5E-19 - T[315-436] 2.6E-42 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[170-256] 1.44E-14 - T[256-315] 1.57E-11 - T[314-432] 2.09E-32 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[171-207] 13.357 - T[208-243] 15.898 - T[244-266] 11.836 - T[267-302] 15.309 - T[303-325] 11.392 - T[326-363] 13.253 - T[364-399] 16.33 - T[400-435] 13.74 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[210-243] 2.7E-8 - T[245-266] 0.0077 - T[268-302] 2.6E-8 - T[302-325] 0.0016 - T[327-363] 2.2E-10 - T[364-399] 3.3E-7 - T[401-434] 6.6E-10 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[436-650] 5.22E-97 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[439-653] 92.766 |
| Pfam |
Thrombospondin_C (IPR008859) - T[453-650] 7.7E-92 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 60.648 % | 770 | 0 |
| TSP2_HUMAN | 58.218 % | 727 | 0 |
| TSP3_HUMAN | 50.225 % | 563 | 0 |