- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S25.g13757.02.t
Possible name(s)
THBS1; THBS2; THBS3
Gene model
Location
S25 [295,756 / 314,263]
Amino acid sequence
Length: 1,434
>Harore.CG.MTP2014.S25.g13757.02.p
MKILYLTVLIAVSLTVAASDLSTKAHDVFEMTGLHGRMRDRNFNRAIKKIRGYDEFVPQA
YRFRRPVSELNLKASDENFRLLALDMSNNNQFVLVMSMKNDNKKRGTLIAVRPKDEFAGS
TDYLEIVCDPTEDYLSLFASIDGDKMAYTFETAGVKVGVQDPVWTNLTLHVSMETVTLFH
GCRYVGQFTLQRSIFQVFDYNQKALLLATGYGKGQRDYRGSLERIRFYVGASLSEILKQE
EGCSDSDLAPTNKGASESRQTSEARAPTISSVSSPDNDDMMCGIPCNTWTDFFHRRRAEP
AIGKPATSITFPEPESQSCWDQSHRYEHGEQWSRDECQSCNCSNGRVTCMVAECPPLHCI
DVIKMEGECCAVCSETADPYSEWSDWTPCSVTCGIGQEQRGRACDGVHFECTLTTKESKT
CVRTPCDVKVKMDGSWSPWAPWNGCSVTCGEGHSTRVRLCNAPSPQLGGKECFGESREVT
TCFEPHCPIDGEWGPYSAFTPCTASCGNGTKTRIRQCDNPAPKYGGNPCVGEPEDTTHCY
ERPCPIDGKWTLWSKYGPCSATCGTGQKTRNRECNNPEPQYGGKQCEGQRSEVKDCRGIE
CPIDGKWGPYTPFTRCTVTCGQGFKKRARECNNPAPMHGGKQCAGDSSQIESCNEKPCPI
DTCRKSPCYRGVTCTPYDDGTFVCGSCPEGMQGDGIKCIDIDECSLVPDACFHYEDKHRC
QNQHGGYTCMPCPEGYKGTRPSGVGVEYATEHKQQCKVSNPCTDGSNPCPGNSECIYLDP
TMSPPFMCKCLPGFSACPSCRGLVCSEDSDLDGWPDQEATCERENGTIICHKDNCPTLPN
SGQENADKDEEGDACDSDDDDDGIQDARDNCPLSFNPSQYDSDGDRVGDVCDNCPFLRNP
GQIDTDGDGLGDDCDPDIDGDYILNGEDNCQYVSNKEQKDGDLDGVGDECDNCPTVENRD
QHDIDDDLVGDACDTNRDIDMDGWQDNRDNCPFVANSAQTDHDHDGIGDSCDPDDDGDGI
LDVDDNCVLIFNPDQLDTDGNGRGDVCEDDFDHDGVADFEDACYANAKIQKTDFSVFDRV
KLDPSGTAQIDPNWVIRNKGKEIIQTINCDPGLAISRDTFEGVDFDGTFFVNTGNDDDYA
GFVFGYQSSSRFYVLMWKQVTQSYWKSYPSHAMGMAGLQLKVVESKTGPGEELRNALWHT
GDTEGQVRTLWQDPTSQGWNNHNAYRWRLNHRPSTGEIRVVMHNGKDLLVDSGRIVDKTY
AGGRMGMFIFSQEMVFYSDMEYKCNDMNEVNCYRMITYFTHSVRAPTRNSASILLHSSDR
SAALRTIRRILRADRLAYTHSGIGGCVLMIYLYLKKSLAMIASFCIISHCTKYRTIVITF
VITEHELPQKKSKNRRNDKKISSLLHFIVVFIFILDSSCFLPPFASSFHFIYDH
Nucleotide sequence
Length: 4,885
>Harore.CG.MTP2014.S25.g13757.02.t
AGAAAAAAATCTCAAGATAATTATTGTCGCATTTGCACGGAAGCTTTACTTTGAATTACC
GTAACTTTACAAAATATATTTCCCAGTAAATTCGTGAAAAAAAACGAGGAAACGTCGGAA
GACGATAGCGACAAGAAAATGAAGATATTGTATCTAACTGTTCTTATAGCCGTGTCTCTC
ACGGTAGCTGCATCGGACCTCAGCACCAAGGCTCACGATGTATTTGAAATGACAGGACTG
CATGGCCGAATGAGAGATAGAAATTTCAATAGAGCTATTAAAAAAATTCGTGGATACGAT
GAATTTGTACCACAAGCATACAGATTTCGTCGGCCGGTAAGCGAACTCAATTTGAAAGCA
TCTGACGAAAATTTTCGTCTACTCGCGCTTGATATGAGCAACAACAACCAATTCGTTTTG
GTAATGTCAATGAAAAACGACAATAAGAAAAGGGGAACTCTGATAGCGGTCAGACCCAAA
GATGAATTTGCTGGTTCTACTGATTATCTGGAGATCGTCTGCGACCCGACTGAAGACTAT
CTATCTCTATTCGCATCGATTGATGGGGACAAAATGGCATACACCTTCGAAACAGCCGGT
GTAAAAGTGGGAGTGCAAGACCCGGTCTGGACCAATCTTACGCTACACGTTTCTATGGAA
ACAGTGACCCTCTTCCACGGATGTCGCTACGTGGGTCAATTCACTTTACAACGTTCGATT
TTCCAAGTGTTTGACTATAACCAGAAGGCATTGCTGTTGGCGACGGGCTATGGAAAAGGC
CAACGAGATTATAGGGGATCGCTAGAGCGAATTCGTTTTTACGTTGGAGCATCGTTATCA
GAAATTCTTAAGCAAGAAGAAGGATGTTCAGACAGCGACTTAGCACCAACGAACAAAGGA
GCTTCTGAATCTCGACAAACAAGCGAAGCACGTGCTCCTACTATATCTTCCGTGTCCTCA
CCAGACAACGATGATATGATGTGCGGTATACCTTGCAACACCTGGACAGATTTCTTCCAT
CGACGCCGCGCAGAACCAGCGATTGGAAAGCCCGCAACTTCAATCACATTCCCAGAACCG
GAATCACAATCTTGCTGGGACCAATCTCATCGATACGAACACGGTGAACAATGGTCAAGG
GACGAATGCCAATCATGTAACTGCTCGAACGGAAGAGTAACTTGTATGGTTGCCGAATGT
CCTCCCCTTCATTGCATTGATGTTATTAAGATGGAAGGAGAATGCTGCGCAGTATGTAGT
GAAACGGCAGATCCCTACTCGGAATGGTCCGATTGGACACCATGCTCGGTAACGTGCGGA
ATCGGGCAGGAGCAAAGAGGAAGGGCGTGCGACGGAGTCCATTTTGAGTGCACTCTCACA
ACCAAGGAATCAAAAACTTGTGTACGGACGCCATGTGACGTTAAAGTGAAAATGGACGGT
AGTTGGTCACCATGGGCCCCGTGGAACGGTTGTAGTGTGACTTGTGGCGAGGGACACAGC
ACCCGTGTTCGTTTATGCAACGCCCCGTCTCCTCAACTCGGTGGAAAGGAGTGCTTTGGA
GAATCACGCGAAGTGACGACGTGTTTTGAACCTCATTGTCCAATCGATGGAGAATGGGGA
CCGTATTCTGCATTTACACCCTGTACCGCGTCTTGTGGTAACGGAACTAAAACTAGGATT
CGACAGTGCGACAATCCAGCGCCCAAGTACGGTGGAAATCCATGTGTAGGCGAGCCAGAA
GACACAACACATTGTTATGAACGGCCCTGTCCGATCGACGGTAAATGGACATTGTGGTCC
AAATACGGACCCTGCAGCGCAACATGTGGAACGGGGCAGAAGACCAGAAATCGAGAATGC
AATAACCCCGAACCGCAATATGGCGGAAAGCAATGCGAGGGACAGAGAAGCGAAGTCAAA
GATTGCCGCGGAATAGAGTGCCCAATTGATGGCAAATGGGGACCTTACACCCCGTTCACT
CGATGTACCGTAACATGTGGTCAAGGTTTCAAAAAGCGAGCTAGGGAATGCAACAATCCT
GCCCCTATGCACGGAGGCAAGCAGTGTGCCGGCGACTCAAGTCAAATCGAAAGTTGCAAC
GAAAAGCCATGTCCAATAGACACATGTCGGAAATCTCCGTGTTATCGTGGAGTTACATGT
ACTCCTTATGACGACGGAACTTTTGTGTGCGGATCCTGTCCGGAAGGAATGCAGGGAGAT
GGAATTAAATGCATTGACATCGACGAGTGCTCATTGGTACCAGACGCGTGCTTCCACTAC
GAAGATAAACACAGATGTCAAAATCAGCACGGAGGTTATACTTGCATGCCTTGCCCAGAA
GGATATAAAGGGACAAGACCAAGCGGTGTTGGAGTGGAATATGCAACGGAACATAAGCAA
CAATGCAAAGTATCCAACCCGTGCACTGACGGTTCAAACCCCTGTCCCGGAAATTCAGAA
TGCATCTACCTGGATCCCACCATGTCGCCACCATTTATGTGCAAGTGTCTTCCTGGATTC
TCTGCCTGTCCGTCTTGCAGGGGATTAGTTTGCTCCGAAGATAGCGATTTAGACGGATGG
CCTGATCAAGAGGCAACGTGTGAAAGGGAAAACGGAACCATAATATGTCATAAGGACAAC
TGTCCCACTCTGCCTAACAGCGGCCAAGAAAACGCAGATAAGGATGAAGAAGGAGACGCG
TGCGATTCAGACGATGATGATGACGGAATTCAAGATGCCAGAGACAACTGTCCTCTTAGT
TTCAACCCAAGTCAATACGACAGTGATGGAGACAGAGTGGGTGATGTCTGTGACAACTGC
CCGTTTTTGCGTAACCCAGGACAAATCGACACAGACGGTGACGGGCTAGGCGATGATTGT
GATCCAGATATTGATGGAGATTATATCCTTAACGGGGAGGATAACTGCCAATACGTCAGT
AATAAGGAGCAGAAGGATGGAGATTTAGATGGAGTCGGAGACGAGTGTGACAATTGTCCC
ACGGTTGAAAACAGAGATCAGCACGATATTGATGACGATTTAGTCGGAGATGCTTGCGAT
ACTAACAGAGACATAGATATGGATGGATGGCAAGACAACCGAGACAACTGCCCATTCGTA
GCGAACAGCGCGCAAACAGACCATGACCACGACGGCATAGGTGACAGTTGCGATCCTGAT
GATGATGGCGATGGAATTTTGGACGTGGATGACAATTGTGTACTCATCTTCAATCCAGAT
CAATTAGATACAGACGGAAACGGACGAGGAGACGTTTGCGAAGATGATTTTGATCACGAC
GGTGTGGCGGACTTCGAGGATGCCTGTTACGCAAATGCAAAGATCCAAAAAACAGATTTC
AGCGTTTTCGACCGAGTCAAATTGGACCCTAGCGGCACTGCACAAATCGACCCAAATTGG
GTGATAAGAAACAAAGGCAAAGAAATCATTCAAACAATAAACTGCGATCCTGGTTTAGCT
ATTAGTCGAGACACTTTCGAAGGCGTTGATTTTGACGGAACCTTCTTTGTCAACACTGGC
AATGACGACGATTACGCCGGTTTCGTTTTCGGTTATCAATCGTCAAGCCGATTTTACGTT
CTCATGTGGAAGCAAGTCACACAGAGTTATTGGAAATCTTACCCAAGTCACGCTATGGGT
ATGGCTGGTCTTCAACTCAAGGTTGTGGAATCAAAAACAGGACCGGGAGAAGAGCTACGA
AATGCGCTGTGGCATACTGGCGATACAGAAGGCCAGGTAAGAACATTATGGCAAGATCCA
ACATCTCAAGGATGGAATAATCACAACGCTTACAGGTGGAGACTCAATCATAGACCGAGT
ACCGGTGAAATCAGGGTTGTCATGCACAATGGAAAAGACCTTCTAGTTGACTCCGGTCGC
ATTGTCGATAAAACATATGCCGGTGGACGCATGGGAATGTTCATCTTCTCACAAGAAATG
GTATTTTACTCCGACATGGAATACAAATGCAATGATATGAACGAGGTGAACTGTTATCGC
ATGATTACATACTTTACCCATTCTGTACGCGCGCCCACAAGAAATAGCGCTTCAATTTTA
CTCCATAGCTCGGACAGAAGCGCCGCATTAAGAACCATACGCCGAATACTACGCGCTGAC
AGGCTAGCTTATACCCATTCCGGCATAGGAGGTTGTGTTCTCATGATCTATCTATATTTG
AAGAAATCTTTAGCCATGATAGCTTCTTTTTGTATAATCTCACACTGTACAAAGTACAGG
ACAATTGTAATAACCTTTGTAATTACAGAACACGAGTTACCACAAAAAAAATCGAAAAAT
CGCCGTAATGATAAAAAGATATCTAGTTTACTTCACTTTATTGTCGTCTTCATATTTATT
CTTGATTCAAGCTGCTTTTTGCCACCTTTCGCTTCCAGCTTTCATTTCATTTATGACCAT
TAGTATTTTCTCATATTATTATTGTTACTCTATTCTTGTATTTTTGTACATGGATTTTTG
TTCTTCCTGCTGAAAATTCGAAATAAACGTTTAGGAACGAATTTGAAATTCGGATTTTTA
AAAATTCCCCATTTTTTCGTTTCTGCTAAAACTTAATTTTTATGGCATTGCAGTATTTGT
AACTTATTCAGTTCATCGTATCTAGACCACCGCCTGGTGTTCATACTGTCTCAGAGCTTT
GCTAAACATACCTTCCAGGCTTCGTACTAACATAACCAATTTGCTTAATGGAAGACAATA
CACGCCCTCGTTCTTGTAGATTTTTCAAATAATGTGAAAGCAGGCTCCAATCTAAATATA
ACGTTGCTGGTATTCTAGATTTGACGAACCTTTTTTTACAAACGAACTTACGAACAAAAC
GGAAAATATATACGAGGAATACAAA
| PANTHER |
Thrombospondin (IPR037349) - T[5-428] 0.0 - T[433-461] 0.0 - T[463-491] 0.0 - T[493-519] 0.0 - T[520-548] 0.0 - T[550-575] 0.0 - T[577-605] 0.0 - T[607-632] 0.0 - T[633-1288] 0.0 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[27-244] 2.85E-13 - T[1072-1286] 1.35E-96 |
| SMART |
Laminin_G (IPR001791) - T[31-231] 3.5E-4 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[317-374] 11.045 |
| SMART |
VWF_dom (IPR001007) - T[319-373] 9.2E-8 |
| Pfam |
VWF_dom (IPR001007) - T[319-373] 1.9E-8 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[337-373] . |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[357-431] 4.0E-10 - T[432-487] 8.6E-18 - T[488-544] 9.0E-18 - T[545-601] 6.2E-17 - T[602-658] 1.2E-17 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[378-427] 11.126 - T[433-488] 13.251 - T[490-545] 13.422 - T[547-602] 13.308 - T[604-659] 13.049 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[379-421] 9.16E-8 - T[433-483] 1.57E-13 - T[487-544] 1.12E-13 - T[543-601] 4.19E-14 - T[601-658] 1.27E-13 |
| SMART |
TSP1_rpt (IPR000884) - T[380-427] 2.1E-9 - T[436-488] 1.2E-13 - T[493-545] 2.5E-13 - T[550-602] 8.5E-13 - T[607-659] 3.6E-13 |
| Pfam |
TSP1_rpt (IPR000884) - T[381-426] 1.7E-9 - T[437-487] 2.7E-11 - T[495-544] 2.4E-9 - T[552-601] 1.8E-10 - T[609-658] 1.0E-10 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[649-699] 0.41 - T[700-757] 1.3E-4 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[659-699] 7.369 - T[700-742] 7.723 - T[758-798] 9.487 |
| SMART |
EGF-like_dom (IPR000742) - T[662-699] 0.19 - T[703-757] 13.0 - T[761-801] 2.7 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[700-739] 5.0E-8 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[797-891] 3.3E-21 - T[892-950] 4.8E-19 - T[951-1072] 5.6E-42 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[806-892] 2.35E-14 - T[889-952] 1.57E-11 - T[950-1068] 4.58E-32 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[807-843] 13.357 - T[844-879] 15.898 - T[880-902] 11.836 - T[903-938] 15.309 - T[939-961] 11.392 - T[962-999] 13.253 - T[1000-1035] 16.33 - T[1036-1071] 13.74 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[846-879] 5.4E-8 - T[881-902] 0.013 - T[904-938] 5.1E-8 - T[938-961] 0.0031 - T[963-999] 4.3E-10 - T[1000-1035] 6.5E-7 - T[1037-1070] 1.3E-9 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[1075-1289] 92.766 |
| Pfam |
Thrombospondin_C (IPR008859) - T[1089-1286] 1.9E-91 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 57.803 % | 906 | 0 |
| TSP2_HUMAN | 55.652 % | 865 | 0 |
| TSP3_HUMAN | 50.375 % | 565 | 0 |