Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S271.g01961.01.t

Possible name(s)

PRDM11; PRDM7; PRDM9

Gene model

Harore.CG.MTP2014.S271.g01961

Location

S271 [54,636 / 60,420]

Sequences

Amino acid sequence

Length: 626

>Harore.CG.MTP2014.S271.g01961.01.p
VFLEASVKMDAAPESGDEDEGACDEKDYEGSDEYDEEKDTTSEGSFGTALARFLNLVTKR
KLEALKRKAAAETESKESAGNQEDQKDQPGPSKPPEPKKKEKMKSRSWTPIRDLYVSSDF
DSGGPTDEESLSSESSGSDFDPELLKTDEMPLFQPMNFKKMLKNAKHKVTLIHLFKPGEY
KKLCKFEKRRVRNIENKCTLLYLLGLPVPSEDILRGKLGVPRIELLQADTTDSESDEDWG
PEAKQKKKKKLPYFKVLPEPIPEDKRKRIVPLSELLPKPSYELFKKGKSCRKKKQTGLTY
NTRHRGGVSYKEEYTPEEDDFIFCDDCGKLQVDGCMEHPLMKMKDTIVKIGIPSRARRTC
PPGLSVDPSQIRGGGDGIWCDVAVPKNTIFGPYEGVKVKKNDLKMLMKVSEGGYSWEIYR
KGKLSHYIDGSDATKSNWLRYVNCARCEEEQNVIAFQYRGQIYYRTFKDVKKNTELFVWY
GSQYAEQLGISCKLAKEKPRSEWQTSSNREASAYIDECVNELPVPAKADVECVVEKHKPV
FFQEVFQASKHKQVKEGKKQCYICKKYYSSEGNLKKHVDLIHKKISKYKCESCGKVKNLS
NVKSVVNYSRREAVCKITDGYTPVKH

Nucleotide sequence

Length: 1,881

>Harore.CG.MTP2014.S271.g01961.01.t
GTTTTTCTCGAAGCTTCAGTGAAAATGGACGCTGCTCCAGAATCTGGCGATGAAGATGAA
GGAGCTTGCGACGAAAAAGATTACGAAGGCAGCGACGAATACGATGAAGAGAAAGACACG
ACCTCGGAAGGAAGTTTTGGTACCGCGCTTGCTCGATTTCTCAACCTTGTTACGAAGAGA
AAGTTGGAGGCTTTGAAAAGGAAAGCAGCCGCAGAGACTGAATCAAAGGAGAGTGCTGGC
AATCAGGAAGATCAAAAGGATCAACCAGGTCCTTCAAAACCACCGGAACCTAAAAAGAAA
GAGAAAATGAAATCTAGATCGTGGACGCCGATACGAGATCTCTACGTCTCCTCAGATTTC
GACAGTGGCGGACCGACAGATGAGGAAAGCTTGAGCTCCGAATCCAGCGGCTCCGATTTT
GACCCAGAGCTACTGAAAACCGACGAGATGCCGCTTTTCCAGCCGATGAATTTCAAGAAG
ATGCTGAAGAATGCCAAGCACAAAGTGACTCTGATTCATTTGTTCAAACCAGGAGAGTAT
AAAAAGTTGTGCAAGTTCGAGAAACGTCGCGTCAGAAATATTGAGAACAAATGCACGTTG
CTTTATTTGCTGGGTCTTCCGGTTCCATCAGAAGATATATTGCGAGGAAAATTGGGTGTA
CCCCGAATCGAGCTGCTGCAAGCCGACACGACTGATTCTGAATCGGATGAAGATTGGGGG
CCGGAGGCAAAACAGAAAAAGAAGAAGAAGCTTCCCTATTTCAAAGTTTTGCCTGAACCT
ATACCGGAAGACAAAAGAAAGCGTATCGTACCACTGTCAGAGCTGCTGCCGAAACCAAGT
TATGAACTATTCAAGAAGGGAAAATCATGCCGCAAGAAGAAACAGACTGGATTGACGTAC
AACACACGGCATAGAGGAGGTGTTAGTTATAAAGAAGAATACACGCCGGAAGAAGATGAT
TTCATTTTCTGCGATGACTGTGGAAAATTGCAAGTGGATGGTTGCATGGAGCATCCGCTC
ATGAAAATGAAAGATACCATTGTGAAAATTGGTATTCCATCGAGAGCCAGACGAACTTGT
CCTCCGGGACTTAGTGTTGATCCCTCACAAATCAGAGGAGGTGGTGATGGTATCTGGTGT
GATGTTGCTGTACCAAAAAACACTATATTTGGTCCATATGAAGGGGTTAAAGTAAAAAAA
AATGATCTCAAGATGCTGATGAAGGTTTCAGAAGGTGGATACTCATGGGAGATTTATCGA
AAAGGAAAATTGTCACACTACATTGATGGAAGTGACGCAACAAAGAGTAACTGGCTGCGC
TATGTTAACTGCGCTAGATGTGAAGAAGAACAGAATGTCATTGCATTTCAATACAGAGGA
CAAATATATTACCGTACCTTCAAAGATGTAAAAAAAAATACGGAATTATTTGTTTGGTAC
GGATCGCAGTACGCTGAGCAGCTTGGAATCTCTTGTAAACTGGCAAAAGAAAAACCACGT
TCAGAATGGCAGACCAGTTCAAATAGGGAAGCGTCTGCTTACATAGATGAATGTGTTAAT
GAGTTACCAGTACCTGCCAAAGCAGATGTTGAATGCGTGGTTGAAAAGCATAAACCAGTA
TTTTTTCAAGAGGTTTTTCAGGCCTCTAAGCACAAGCAAGTAAAGGAGGGAAAGAAGCAG
TGTTATATATGCAAGAAATATTATTCGAGTGAAGGCAATCTGAAAAAGCATGTCGACCTT
ATTCATAAAAAAATATCAAAATACAAATGTGAGAGTTGTGGTAAGGTGAAAAACCTTTCA
AATGTGAAATCTGTGGTAAACTATTCTCGCAGAGAGGCAGTCTGCAAGATCACCGACGGA
TACACACCGGTAAAACACTGA

InterProScan

SMART	SET_dom (IPR001214) - T[362-487] 7.5E-9
ProSiteProfiles	SET_dom (IPR001214) - T[362-481] 15.681
Pfam	SET_dom (IPR001214) - T[405-481] 5.3E-7
SUPERFAMILY	Znf_C2H2_sf (IPR036236) - T[550-595] 5.76E-5
ProSitePatterns	Znf_C2H2_type (IPR013087) - T[561-582] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PRDM9_HUMAN	31.856 %	179	1.68E-47
PRDM7_HUMAN	31.148 %	181	4.05E-50
PRD11_HUMAN	41.176 %	125	2.11E-30