- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S279.g08343.01.t
Possible name(s)
FP565260.1; PWP2; WDR5
Gene model
Location
S279 [19,072 / 21,851]
Amino acid sequence
Length: 903
>Harore.CG.MTP2014.S279.g08343.01.p
MKYSFQFSNLLGTVYAKGNVEFLSGNDTLVSPVGNRATLFNLKDNNSSTLPITTKCNIAH
LAFSPDDCMAIAIDEEGEASLISLLSKTIIHRFKFRSPVTCIKYSPDGKRFAVATDRTVL
VYYSPGKTRELNPFTLNRSYHGAYDDATCIDWTSDSNVFAAGSKDMNTKVYGARKFQNLH
VYSLGGHKDEIMGCFFQEDSLDLYTVCRSGSLNVWECDTDLDQLMPMERKEVVSYSAEDP
METGNITENDRTDDDHQLNNINQTKPMEKVNYSRLSKYFYNKEGDFNSVTAVAFHKPKQI
IVTGFASGAFYLHELPNFNLIHSLSISEQHISTACFNKSGDWLALGCSGLGQLLVWEWQS
ETYILKQHGHFNNMTSLDYSPDGRYIVTGGEDSKVKVWDTSSGFCFVTFIEHKAPVTDVT
FTSSGYVIVSASLDGTVRAFDMHRYRNFRTFTSPKPVQFVCLAVDHSGEMVSAGSHDTFE
IYLWTMRTGHLLDILSGHEAPVTSIAFSKQDALLVSGSWDGLVKLWNVIDGKGARETLQI
GHDVLAVAFNPNGKEIAVSSLNAEITIWDVQHAVQKGSIECRHDMGAGRGELDRVSSKTK
VQGKSFDTISYTADGQAIIAGGKCLNICLYSVKECLLLKRFKVSQNLSFDSVEEFLNKRK
MTEFGPSALIDMGESEQGVSIKLPGVKKGEMCGRAHKPEVRVTAVRFSPSGREWAATTTE
GLLIYSLDASMVFDPFDLEVEINPEAINHQLAMKEYGTAIMMAFRLNENPHITRVIESVP
ADDIDIISKGLSLVYVEKLLEFVARQLEKSRHANFYLLWCKCLLIHHSVHLKPRSNKVMH
TLNHLSKALTVKVDQLGKLCDTNKYQMEYILATSVHLCQKRQKIKPDTSEEDSNVLFESD
QET
Nucleotide sequence
Length: 2,712
>Harore.CG.MTP2014.S279.g08343.01.t
ATGAAGTACTCCTTCCAGTTTTCAAACCTTCTCGGTACAGTATACGCTAAAGGAAACGTC
GAATTTCTCTCCGGTAACGACACTCTAGTCAGTCCAGTTGGGAACAGAGCCACTCTATTC
AATTTGAAAGATAATAACTCGTCCACGCTGCCGATTACGACGAAGTGCAATATTGCTCAT
TTGGCATTTTCTCCAGATGACTGCATGGCAATAGCGATAGATGAAGAAGGTGAAGCTTCG
CTCATAAGTTTGTTGAGCAAAACAATAATTCACAGATTCAAATTTCGTAGCCCGGTCACC
TGTATTAAATACAGTCCGGACGGGAAAAGATTCGCCGTAGCCACGGACAGAACAGTACTC
GTGTATTACTCCCCTGGTAAAACACGGGAACTTAACCCTTTCACGTTGAATCGTAGCTAT
CACGGTGCTTACGACGACGCTACCTGCATCGACTGGACGTCAGATTCCAACGTGTTCGCG
GCGGGCAGCAAAGACATGAATACAAAGGTGTACGGGGCTAGAAAATTTCAAAATTTGCAT
GTCTATTCTTTGGGAGGTCATAAAGATGAAATAATGGGTTGTTTTTTCCAAGAAGACTCG
CTGGATCTCTATACCGTTTGTAGGAGCGGAAGCTTGAATGTTTGGGAGTGCGACACCGAT
CTGGATCAGTTGATGCCGATGGAGCGCAAAGAGGTTGTATCCTATTCTGCTGAAGACCCG
ATGGAGACAGGTAATATCACCGAGAACGACCGTACCGATGATGATCATCAGTTGAACAAT
ATCAACCAAACCAAGCCTATGGAAAAAGTGAATTATTCCAGGTTGTCGAAATACTTTTAC
AACAAAGAAGGCGACTTCAATTCGGTAACAGCCGTTGCCTTTCACAAACCAAAACAAATT
ATAGTTACTGGTTTTGCATCCGGAGCGTTTTATTTGCACGAACTTCCGAATTTCAATCTC
ATTCATTCCTTGAGCATTTCAGAGCAACACATATCCACCGCCTGCTTCAATAAGAGTGGT
GACTGGCTAGCGTTAGGATGCTCTGGTCTTGGCCAACTCCTGGTGTGGGAATGGCAAAGC
GAGACCTATATCCTGAAACAGCATGGTCATTTCAATAACATGACCAGCTTGGATTATTCA
CCGGATGGACGGTACATCGTTACCGGCGGTGAAGACAGCAAAGTAAAAGTTTGGGACACG
TCGAGCGGCTTCTGTTTCGTAACCTTCATAGAACACAAGGCGCCCGTGACCGACGTGACT
TTTACTTCGAGTGGTTATGTCATAGTTTCGGCCTCTCTCGACGGTACCGTCCGTGCTTTT
GACATGCACAGATACAGAAATTTTAGGACATTCACATCGCCCAAACCGGTCCAGTTTGTC
TGCCTCGCCGTGGATCACAGCGGCGAAATGGTATCTGCCGGTTCCCACGACACGTTCGAA
ATCTATCTGTGGACCATGCGGACCGGCCATCTTCTCGACATTCTCTCAGGACACGAAGCG
CCGGTCACGTCCATAGCTTTCTCGAAACAAGACGCCCTGTTGGTCAGCGGTTCGTGGGAC
GGTCTGGTCAAATTATGGAACGTCATAGACGGGAAGGGAGCCAGAGAAACTTTGCAGATC
GGACACGATGTACTCGCCGTCGCTTTCAATCCGAACGGAAAAGAAATCGCAGTCTCGTCT
CTGAACGCAGAGATTACGATATGGGATGTCCAGCATGCGGTTCAAAAAGGGTCCATAGAA
TGCCGTCATGACATGGGCGCGGGAAGGGGCGAACTCGATAGGGTATCATCTAAAACCAAA
GTGCAAGGAAAATCTTTTGACACAATTTCCTATACAGCTGATGGACAAGCTATCATTGCA
GGAGGAAAATGTCTCAATATTTGCTTATATAGCGTCAAAGAGTGTCTGCTTCTGAAGAGA
TTTAAAGTCTCTCAAAATCTGTCATTCGACTCTGTAGAAGAATTTCTCAACAAGAGAAAA
ATGACCGAGTTTGGTCCGTCCGCTTTGATCGACATGGGCGAGTCGGAGCAAGGGGTGTCT
ATCAAGTTACCCGGAGTTAAGAAGGGTGAAATGTGCGGTCGAGCTCACAAACCAGAAGTT
CGGGTGACCGCCGTCCGATTTTCACCGTCCGGTCGCGAATGGGCGGCCACGACCACCGAA
GGTCTGTTGATTTATTCCCTCGACGCCAGTATGGTTTTCGATCCTTTCGATTTGGAAGTC
GAGATCAATCCAGAAGCGATAAATCATCAACTGGCTATGAAAGAATATGGCACGGCTATC
ATGATGGCTTTTCGGCTAAATGAAAATCCTCACATCACCAGAGTGATCGAGAGCGTTCCC
GCCGACGATATCGACATAATAAGCAAAGGTTTATCGCTGGTTTATGTCGAAAAATTACTA
GAATTCGTGGCTCGCCAATTGGAAAAATCTCGGCATGCGAATTTTTATCTGCTGTGGTGC
AAATGCTTGCTTATACATCACAGCGTTCACTTGAAACCAAGATCGAATAAAGTCATGCAC
ACGCTCAATCATCTCTCTAAAGCTTTGACCGTAAAAGTGGACCAACTCGGTAAACTCTGC
GATACCAATAAATATCAGATGGAGTATATACTGGCTACGTCCGTGCACTTGTGCCAAAAA
CGACAGAAAATTAAGCCGGATACCTCGGAAGAGGATTCTAACGTTTTGTTTGAAAGCGAT
CAAGAGACTTGA
| PANTHER |
PWP2 (IPR027145) - T[4-890] 0.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[13-247] 1.8E-23 - T[251-365] 1.3E-7 - T[366-463] 1.9E-25 - T[464-749] 6.3E-33 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[57-230] 5.68E-33 - T[283-572] 2.29E-63 - T[284-369] 5.68E-33 |
| SMART |
WD40_repeat (IPR001680) - T[86-123] 0.0017 - T[133-172] 0.042 - T[177-216] 0.43 - T[275-314] 33.0 - T[317-357] 10.0 - T[360-399] 4.8E-8 - T[402-441] 2.0E-6 - T[444-485] 200.0 - T[488-527] 4.4E-10 - T[531-569] 0.16 - T[688-726] 82.0 |
| Pfam |
WD40_repeat (IPR001680) - T[97-122] 0.022 - T[365-399] 1.7E-7 - T[405-440] 0.015 - T[491-527] 2.3E-8 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[140-578] 43.265 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[367-408] 16.29 - T[409-450] 11.411 - T[495-536] 16.089 - T[544-571] 9.539 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[386-400] . - T[514-528] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[386-400] 2.3E-5 - T[428-442] 2.3E-5 - T[514-528] 2.3E-5 |
| SUPERFAMILY |
Quino_amine_DH_bsu (IPR011044) - T[539-646] 4.71E-7 - T[697-728] 4.71E-7 |
| Pfam |
SSU_processome_Utp12 (IPR007148) - T[767-871] 2.0E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 29.703 % | 109 | 6.16E-26 |
| WDR5B_HUMAN | 28.713 % | 106 | 8.39E-25 |
| PWP2_HUMAN | 52.649 % | 1006 | 0 |