- Clone 'cilv018b19' >
- Transcript 'Haaura.CG.MTP2014.S8...' >
- Transcript 'KH2012:KH.L96.112.v1...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S27.g01215.01.t
Possible name(s)
DKC1; TRUB1
Gene model
Location
S27 [261,903 / 264,529]
Amino acid sequence
Length: 564
>Harore.CG.MTP2014.S27.g01215.01.p
MVVNGGMDQEHTKKKKRKSDKVTAIGEVQEQGDFFIKSEDKQPPKLNTSQWPLLLKNYDR
LNVRTNHYTPLACGCSPLKRDIQEYVRTGFINLDKPANPSSHEVVAWIKRILKVEKTGHS
GTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVCIVRLHDAIENQLKLARMERQYEKNCH
FCFLIILNSSQAIETLTGALFQRPPLISAVKRQLRVRTIYESKLLEFDPERNLGVFWISC
EAGTYVRTLCVHLGLLLGVGGQMQELRRVRSGIVSENAGLVTMHDVLDAQWLFEHHKDET
YLRRVISPLEKLLVSHKRIILKDSAVNAVCYGAKLMLPGLLRYEDGIEINEEIVAITTKG
EAICLAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKAVMKKNMMKSGLLGK
YGKPNEKTPKDWMTSYKDYSQTETSLQAVEKSLVISADAKIDLQEQEKKEQLATKRKRPV
SESSSASSEAAVAVISKPAKVELVTSDSETKVKKKKKKEKKEKKKLKKEKDATEKSTASS
IADETLNTTAASTDTSMLQVRISN
Nucleotide sequence
Length: 1,855
>Harore.CG.MTP2014.S27.g01215.01.t
AAAATTTGAGCGCGTTCCAAATTGCTGCTCATTGATAGCGATCATATAAAATTCAAGAAA
ATACCTACGTAGGCATTATTCAGATCTTGACATGGTGGTCAACGGAGGTATGGATCAAGA
ACATACGAAGAAGAAGAAGCGTAAGTCCGATAAAGTCACTGCAATCGGAGAAGTTCAAGA
ACAAGGTGATTTCTTCATTAAGTCGGAAGATAAACAGCCACCTAAGCTTAATACATCGCA
ATGGCCATTGCTTCTAAAAAACTATGACAGACTTAATGTGCGTACAAATCATTACACGCC
ATTGGCCTGTGGATGTTCTCCTTTGAAGAGAGACATCCAGGAGTATGTTAGGACGGGATT
CATTAACCTTGACAAGCCAGCTAACCCATCATCTCATGAAGTTGTTGCGTGGATAAAAAG
AATATTGAAGGTTGAAAAAACCGGGCACAGTGGAACTCTGGATCCGAAAGTAACCGGTTG
CCTGATTGTGTGTGTCGAACGTGCGACACGTCTGGTAAAATCCCAGCAGTCAGCAGGTAA
GGAATATGTGTGCATTGTACGGCTTCATGATGCTATTGAAAATCAACTGAAGCTTGCAAG
GATGGAAAGGCAATACGAGAAGAATTGCCATTTTTGCTTTTTAATCATTTTAAACTCTTC
ACAGGCTATTGAAACACTCACCGGAGCATTGTTCCAGCGTCCTCCCTTAATCTCTGCCGT
TAAAAGACAGTTGCGTGTGCGTACCATTTATGAAAGCAAGCTATTGGAATTTGATCCTGA
AAGGAATTTAGGTGTGTTCTGGATTAGCTGCGAAGCCGGAACTTACGTCAGAACTTTGTG
CGTACATCTCGGTTTGCTGCTTGGGGTCGGAGGTCAGATGCAAGAACTCAGACGAGTGCG
TTCTGGAATCGTTTCAGAAAATGCAGGTCTAGTTACAATGCATGATGTACTGGATGCTCA
ATGGTTATTTGAACACCACAAGGATGAAACCTATCTCAGACGGGTTATTAGTCCATTGGA
GAAGTTGCTTGTTTCACATAAAAGAATAATTCTGAAAGACAGTGCTGTGAATGCTGTTTG
CTACGGTGCTAAATTAATGCTGCCTGGACTTCTAAGATACGAAGATGGAATCGAGATCAA
CGAAGAAATTGTAGCGATCACGACCAAGGGTGAAGCAATATGTTTAGCTATTGCACTAAT
GACAACTGCGGTGATATCCACATGTGATCACGGAGTTGTAGCAAAGATTAAAAGAGTCAT
CATGGAACGGGACACTTACCCCAGAAAGTGGGGTTTGGGACCTAAGGCGGTGATGAAAAA
GAATATGATGAAGTCAGGCCTCCTAGGAAAGTATGGCAAGCCTAATGAAAAGACTCCAAA
AGATTGGATGACCTCTTACAAAGATTATTCTCAGACAGAAACTTCGCTACAGGCTGTTGA
AAAATCATTGGTCATCTCTGCAGATGCAAAAATAGATTTACAAGAGCAGGAGAAGAAAGA
ACAGCTCGCGACAAAGCGAAAGCGTCCTGTCAGCGAAAGCTCTTCAGCTTCCTCGGAGGC
AGCGGTTGCAGTCATATCTAAGCCTGCTAAAGTGGAACTAGTTACCTCGGATTCGGAAAC
TAAAGTCAAGAAGAAAAAGAAGAAAGAAAAAAAAGAAAAGAAGAAATTGAAAAAGGAGAA
AGATGCTACAGAAAAATCAACGGCATCTTCAATAGCTGATGAAACACTGAATACCACAGC
TGCTTCGACAGATACTAGTATGTTGCAGGTGAGAATTAGTAATTGATCTCCTGAAAGTAA
GAAGAAAAAGAAAGAGAAGAAGAAAAAAAGGAAAAAGGAGGAAGAAGAGGAATGA
| PANTHER |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[10-530] 2.4E-240 |
| SMART |
Dyskerin-like (IPR012960) - T[47-105] 2.0E-35 |
| SUPERFAMILY |
PsdUridine_synth_cat_dom_sf (IPR020103) - T[48-314] 6.24E-76 |
| Pfam |
Dyskerin-like (IPR012960) - T[48-105] 5.6E-32 |
| Pfam |
PsdUridine_synth_N (IPR002501) - T[109-246] 3.3E-23 |
| TIGRFAM |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[190-401] 2.2E-102 |
| Pfam |
TruB_C (IPR032819) - T[247-313] 1.2E-19 |
| TIGRFAM |
Uncharacterised_CHP00451 (IPR004521) - T[306-386] 4.5E-7 |
| ProSiteProfiles |
PUA (IPR002478) - T[316-391] 17.243 |
| SUPERFAMILY |
PUA-like_sf (IPR015947) - T[316-397] 1.16E-19 |
| SMART |
PUA (IPR002478) - T[317-391] 8.3E-19 |
| Pfam |
PUA (IPR002478) - T[317-390] 4.4E-17 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DKC1_HUMAN | 69.28 % | 655 | 0 |