- Transcript 'KH2012:KH.C11.151.v3...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S27.g01215.02.t
Possible name(s)
DKC1; TRUB1
Gene model
Location
S27 [259,495 / 264,529]
Amino acid sequence
Length: 560
>Harore.CG.MTP2014.S27.g01215.02.p
MVVNGGMDQEHTKKKKRKSDKVTAIGEVQEQGDFFIKSEDKQPPKLNTSQWPLLLKNYDR
LNVRTNHYTPLACGCSPLKRDIQEYVRTGFINLDKPANPSSHEVVAWIKRILKVEKTGHS
GTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVCIVRLHDAIENQLKLARAIETLTGALF
QRPPLISAVKRQLRVRTIYESKLLEFDPERNLGVFWISCEAGTYVRTLCVHLGLLLGVGG
QMQELRRVRSGIVSENAGLVTMHDVLDAQWLFEHHKDETYLRRVISPLEKLLVSHKRIIL
KDSAVNAVCYGAKLMLPGLLRYEDGIEINEEIVAITTKGEAICLAIALMTTAVISTCDHG
VVAKIKRVIMERDTYPRKWGLGPKAVMKKNMMKSGLLGKYGKPNEKTPKDWMTSYKDYSQ
TETSLQAVEKSLVISADAKIDLQEQEKKEQLATKRKRPVSESSSASSEAAVAVISKPAKV
ELVTSDSETKVKKKKKKEKKEKKKLKKEKDATEKSTASSIADETLNTTAASTDTSMLQSP
ESKKKKKEKKKKRKKEEEEE
Nucleotide sequence
Length: 1,683
>Harore.CG.MTP2014.S27.g01215.02.t
ATGGTGGTCAACGGAGGTATGGATCAAGAACATACGAAGAAGAAGAAGCGTAAGTCCGAT
AAAGTCACTGCAATCGGAGAAGTTCAAGAACAAGGTGATTTCTTCATTAAGTCGGAAGAT
AAACAGCCACCTAAGCTTAATACATCGCAATGGCCATTGCTTCTAAAAAACTATGACAGA
CTTAATGTGCGTACAAATCATTACACGCCATTGGCCTGTGGATGTTCTCCTTTGAAGAGA
GACATCCAGGAGTATGTTAGGACGGGATTCATTAACCTTGACAAGCCAGCTAACCCATCA
TCTCATGAAGTTGTTGCGTGGATAAAAAGAATATTGAAGGTTGAAAAAACCGGGCACAGT
GGAACTCTGGATCCGAAAGTAACCGGTTGCCTGATTGTGTGTGTCGAACGTGCGACACGT
CTGGTAAAATCCCAGCAGTCAGCAGGTAAGGAATATGTGTGCATTGTACGGCTTCATGAT
GCTATTGAAAATCAACTGAAGCTTGCAAGGGCTATTGAAACACTCACCGGAGCATTGTTC
CAGCGTCCTCCCTTAATCTCTGCCGTTAAAAGACAGTTGCGTGTGCGTACCATTTATGAA
AGCAAGCTATTGGAATTTGATCCTGAAAGGAATTTAGGTGTGTTCTGGATTAGCTGCGAA
GCCGGAACTTACGTCAGAACTTTGTGCGTACATCTCGGTTTGCTGCTTGGGGTCGGAGGT
CAGATGCAAGAACTCAGACGAGTGCGTTCTGGAATCGTTTCAGAAAATGCAGGTCTAGTT
ACAATGCATGATGTACTGGATGCTCAATGGTTATTTGAACACCACAAGGATGAAACCTAT
CTCAGACGGGTTATTAGTCCATTGGAGAAGTTGCTTGTTTCACATAAAAGAATAATTCTG
AAAGACAGTGCTGTGAATGCTGTTTGCTACGGTGCTAAATTAATGCTGCCTGGACTTCTA
AGATACGAAGATGGAATCGAGATCAACGAAGAAATTGTAGCGATCACGACCAAGGGTGAA
GCAATATGTTTAGCTATTGCACTAATGACAACTGCGGTGATATCCACATGTGATCACGGA
GTTGTAGCAAAGATTAAAAGAGTCATCATGGAACGGGACACTTACCCCAGAAAGTGGGGT
TTGGGACCTAAGGCGGTGATGAAAAAGAATATGATGAAGTCAGGCCTCCTAGGAAAGTAT
GGCAAGCCTAATGAAAAGACTCCAAAAGATTGGATGACCTCTTACAAAGATTATTCTCAG
ACAGAAACTTCGCTACAGGCTGTTGAAAAATCATTGGTCATCTCTGCAGATGCAAAAATA
GATTTACAAGAGCAGGAGAAGAAAGAACAGCTCGCGACAAAGCGAAAGCGTCCTGTCAGC
GAAAGCTCTTCAGCTTCCTCGGAGGCAGCGGTTGCAGTCATATCTAAGCCTGCTAAAGTG
GAACTAGTTACCTCGGATTCGGAAACTAAAGTCAAGAAGAAAAAGAAGAAAGAAAAAAAA
GAAAAGAAGAAATTGAAAAAGGAGAAAGATGCTACAGAAAAATCAACGGCATCTTCAATA
GCTGATGAAACACTGAATACCACAGCTGCTTCGACAGATACTAGTATGTTGCAGTCTCCT
GAAAGTAAGAAGAAAAAGAAAGAGAAGAAGAAAAAAAGGAAAAAGGAGGAAGAAGAGGAA
TGA
| PANTHER |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[10-553] 5.9E-243 |
| SMART |
Dyskerin-like (IPR012960) - T[47-105] 2.0E-35 |
| Pfam |
Dyskerin-like (IPR012960) - T[48-105] 5.6E-32 |
| SUPERFAMILY |
PsdUridine_synth_cat_dom_sf (IPR020103) - T[48-293] 4.8E-77 |
| TIGRFAM |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[55-380] 1.7E-165 |
| Pfam |
PsdUridine_synth_N (IPR002501) - T[109-225] 2.4E-20 |
| Pfam |
TruB_C (IPR032819) - T[226-292] 1.2E-19 |
| TIGRFAM |
Uncharacterised_CHP00451 (IPR004521) - T[285-365] 4.5E-7 |
| SUPERFAMILY |
PUA-like_sf (IPR015947) - T[295-376] 1.16E-19 |
| ProSiteProfiles |
PUA (IPR002478) - T[295-370] 17.243 |
| SMART |
PUA (IPR002478) - T[296-370] 8.3E-19 |
| Pfam |
PUA (IPR002478) - T[296-369] 4.4E-17 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DKC1_HUMAN | 63.873 % | 648 | 0 |