Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S28.g13605.02.t

Possible name(s)

AVPR1A; AVPR1B; GNRHR

Gene model

Harore.CG.MTP2014.S28.g13605

Location

S28 [430,612 / 435,101]

Sequences

Amino acid sequence

Length: 238

>Harore.CG.MTP2014.S28.g13605.02.p
MSKPLAGCPGYFVTQCVDLRISAGVNLKPYYVYTMIISFFAPLVCILVCYILIAIAISKM
AKISKEAEKRCSLKVRDNSKRSITRKSLDRAQKMSKIVTALITATFVLCWGPYYVAGLIY
WFDREDSSVPDQQAITRTATMVMLLSVYLNPCLHPLITVLLMKEVRDNLFSQCRIVRSPG
PRLPPRKISSHNKKKKKASVVIRGNKNGTKELLANENGSPDPVYTGNGKDDLLGEAML

Nucleotide sequence

Length: 717

>Harore.CG.MTP2014.S28.g13605.02.t
ATGTCGAAACCACTTGCCGGATGCCCGGGGTATTTCGTTACGCAGTGCGTCGATCTCCGA
ATCAGTGCCGGAGTCAACCTAAAACCTTATTACGTTTACACGATGATCATATCTTTCTTC
GCTCCGCTTGTTTGCATCCTGGTCTGTTATATTCTTATCGCCATAGCGATATCAAAGATG
GCAAAAATCTCCAAAGAAGCGGAAAAAAGATGTTCTCTCAAGGTTCGTGATAACTCTAAA
AGAAGCATTACACGGAAAAGCTTGGATCGCGCGCAAAAGATGTCGAAAATCGTAACCGCC
CTTATCACTGCGACCTTCGTTCTTTGCTGGGGACCGTACTATGTGGCGGGATTAATATAC
TGGTTCGACAGAGAAGACTCTTCAGTGCCTGACCAGCAAGCAATCACTCGCACAGCGACC
ATGGTGATGCTGTTGTCAGTATATCTGAATCCATGTCTTCATCCACTCATCACTGTTTTA
CTGATGAAGGAAGTTAGAGACAATCTCTTTTCTCAGTGTCGCATTGTTAGAAGTCCTGGA
CCAAGACTGCCACCTCGTAAAATCAGCAGCCACAACAAAAAGAAAAAAAAAGCATCTGTA
GTGATAAGAGGCAACAAAAATGGCACGAAAGAATTACTTGCCAATGAAAACGGAAGTCCT
GATCCCGTGTACACTGGGAACGGGAAGGACGATCTCCTCGGTGAAGCAATGTTGTGA

InterProScan

ProSiteProfiles	GPCR_Rhodpsn_7TM (IPR017452) - T[1-158] 15.878
Pfam	GPCR_Rhodpsn (IPR000276) - T[26-157] 3.6E-17
PRINTS	GPCR_Rhodpsn (IPR000276) - T[31-54] 3.8E-12 - T[95-119] 3.8E-12 - T[140-166] 3.8E-12

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value