- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S291.g09670.02.t
Possible name(s)
ADGRB3; HMCN1; SEMA5A
Gene model
Location
S291 [50,082 / 55,180]
Amino acid sequence
Length: 647
>Harore.CG.MTP2014.S291.g09670.02.p
MIEAAQRILPIIKTQPGTHGGLGEHVANRVAEEDAPAQELANWIVGYKNALKNIYWEYVT
SIIVECNQTKLFGTTGQTGAIARLRAVLEIKEEHEPASPVIQEVNVLKAARNFVAATIRV
KMYHMYPTFEGNKCALCWEYYAQWGSWAPWSSCDATCGQGHALRNRQCLNERQTTTCFGN
ATQIQICVIKNCKTWPQWAKWSPWRQCSSSCGSGEIIKTRLCMNGTAISNACRGGHVRRI
SCRGNCTLANDWSEWSGCSETCGTGFRRRTRMCLATRCKNPEGVENEECNTQQCGEGNYS
QCGIAGDVRQILTGRQVARVVRGYNAARGAWPWQVMIVNKAGNIRESLKTEFLGGGGSLV
NNKYVLSASHMLGKDENNYLIILGLTVIPRKNEEIPRHIQVYSVEKFETHEKFDKYDFDY
DIALIKLGSRILFNNNGTFLEVKSPSPYVSFSKYVRPICLPCIGAHEETKMYTIKYGVRV
RVYEEENCDIEERKLISPKLGEGLAVVTGYGYITSRITNTEVSSRPEVLQQALLRMLDHG
KCKEGVEKIVESIAWEAANYTTRMICTKSASATVISDACQGDSGGPLVRQIMRDDGSTQW
VQVGIVSWGLGCATTLEVPGSSARYQIPGYYTNVASLMSWITNILKI
Nucleotide sequence
Length: 1,944
>Harore.CG.MTP2014.S291.g09670.02.t
ATGATCGAAGCTGCTCAAAGAATTCTGCCGATAATAAAAACCCAACCTGGAACGCATGGG
GGTCTTGGGGAGCATGTAGCGAATCGTGTGGCGGAGGAAGACGCTCCCGCACAAGAACTT
GCCAACTGGATAGTAGGATACAAGAATGCACTCAAGAACATATACTGGGAATATGTAACG
AGCATCATTGTGGAATGCAATCAGACAAAGTTATTTGGAACGACTGGTCAAACTGGAGCG
ATTGCTCGACTCCGTGCGGTCCTGGAAATCAAAGAAGAACACGAACCTGCAAGCCCGGTC
ATTCAAGAAGTGAATGTGCTAAAGGCGGCCAGGAATTTCGTGGCTGCAACAATCCGTGTA
AAGATGTATCATATGTACCCGACTTTTGAAGGCAACAAATGCGCATTATGCTGGGAATAT
TACGCGCAATGGGGAAGTTGGGCTCCATGGTCATCATGTGACGCGACATGTGGACAAGGA
CACGCTCTACGAAATCGACAGTGCTTGAATGAAAGACAGACTACGACCTGCTTCGGGAAT
GCAACTCAGATACAGATTTGTGTTATCAAAAATTGTAAAACTTGGCCACAATGGGCAAAA
TGGAGTCCGTGGAGGCAATGTTCATCGTCATGCGGATCGGGTGAAATCATCAAAACTCGG
CTTTGTATGAACGGTACTGCAATTTCAAACGCATGCAGAGGAGGCCACGTGCGACGAATC
AGCTGCAGAGGAAACTGCACTCTTGCAAACGACTGGTCAGAATGGAGTGGTTGCTCCGAA
ACCTGCGGTACAGGATTCAGAAGAAGGACGAGGATGTGCTTAGCAACTAGGTGTAAGAAT
CCTGAGGGCGTAGAAAATGAAGAATGTAACACTCAGCAATGCGGGGAAGGAAATTACAGC
CAATGTGGGATAGCCGGCGACGTTCGCCAGATTCTAACAGGCCGACAGGTAGCACGCGTT
GTGCGAGGTTATAACGCAGCAAGAGGTGCATGGCCGTGGCAAGTTATGATTGTGAATAAA
GCTGGAAATATTAGAGAGAGTCTAAAAACTGAATTCCTCGGTGGAGGAGGTTCGCTGGTC
AACAACAAATATGTCCTCAGCGCTTCTCACATGCTTGGAAAGGACGAAAACAACTACCTC
ATTATACTAGGTCTCACCGTGATTCCAAGGAAAAACGAAGAGATTCCGAGACATATTCAG
GTTTACAGTGTGGAAAAATTCGAGACTCATGAAAAGTTCGATAAATATGATTTTGATTAC
GATATTGCACTGATAAAGCTAGGAAGCAGAATTCTGTTCAACAATAACGGTACATTCTTG
GAGGTCAAATCGCCGTCTCCCTACGTTAGCTTTTCAAAATACGTCAGACCCATATGCCTG
CCATGTATCGGTGCGCACGAGGAAACGAAAATGTACACAATCAAATACGGCGTCAGAGTG
CGGGTTTATGAAGAAGAAAATTGTGACATAGAAGAACGAAAACTCATTAGTCCAAAGTTG
GGAGAAGGACTTGCCGTTGTGACCGGGTACGGCTACATTACTTCGAGGATAACGAACACA
GAAGTCAGCTCAAGGCCGGAAGTTTTACAACAAGCTCTGCTGAGGATGCTAGATCACGGA
AAGTGCAAGGAAGGAGTAGAGAAAATCGTGGAATCAATTGCCTGGGAAGCAGCAAATTAC
ACAACAAGAATGATCTGTACGAAATCCGCAAGTGCAACTGTTATATCAGACGCATGTCAA
GGTGACAGTGGCGGACCATTGGTCAGACAGATCATGCGTGATGATGGATCGACACAGTGG
GTTCAAGTCGGAATAGTGAGCTGGGGACTAGGATGCGCAACGACTTTGGAAGTTCCGGGA
TCCAGCGCGAGGTATCAGATACCCGGATACTATACCAACGTCGCATCTCTGATGTCTTGG
ATCACTAACATACTTAAAATCTGA
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[140-192] 4.1E-10 - T[196-242] 4.8E-5 - T[243-301] 1.4E-9 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[141-193] 10.751 - T[195-243] 9.166 - T[246-295] 11.441 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[143-188] 2.35E-10 - T[196-242] 3.27E-6 - T[250-294] 8.63E-8 |
| SMART |
TSP1_rpt (IPR000884) - T[144-193] 4.6E-10 - T[198-247] 0.086 - T[249-295] 2.2E-9 |
| Pfam |
TSP1_rpt (IPR000884) - T[146-192] 7.6E-11 - T[200-242] 1.3E-4 - T[251-294] 4.0E-6 |
| SUPERFAMILY |
Peptidase_S1_PA (IPR009003) - T[318-471] 4.17E-50 - T[499-646] 4.17E-50 |
| SMART |
Trypsin_dom (IPR001254) - T[319-641] 3.9E-49 |
| CDD |
Trypsin_dom (IPR001254) - T[320-644] 2.70804E-53 |
| ProSiteProfiles |
Trypsin_dom (IPR001254) - T[320-646] 26.1 |
| Pfam |
Trypsin_dom (IPR001254) - T[321-477] 4.7E-18 - T[506-641] 1.2E-16 |
| PRINTS |
Peptidase_S1A (IPR001314) - T[356-371] 1.2E-7 - T[576-588] 1.2E-7 |
| ProSitePatterns |
TRYPSIN_SER (IPR033116) - T[577-588] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 33.908 % | 100 | 1.66E-21 |
| TM11B_HUMAN | 28.28 % | 97.8 | 9.91E-22 |
| THRB_HUMAN | 27.746 % | 107 | 2.63E-24 |