Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S295.g01166.01.t

Possible name(s)

LARP4; LARP6; LARP7

Gene model

Harore.CG.MTP2014.S295.g01166

Location

S295 [83,397 / 87,090]

Sequences

Amino acid sequence

Length: 575

>Harore.CG.MTP2014.S295.g01166.01.p
MSGRQRQYPRINTNRYYDASCKNRGYYIKTEMSSQGVAPFTSNQPFPVQGFNGGQYVMIV
PDNAVFVRHSGMDRHRQQPYTYVQELRPQNHYNNYVPATQWRAPVQLTDTRLNPNSKEFV
HRKTEFGNKSASRFSSPGIDSERNISSCSESMEGVSTGLSNKLRNLGLRYESGDSGIAES
SSSSTMWSSDDDVDGSISEEDKRASQQHEKIWGIADDKNYWYSEKGLQPNDSICYAIVRQ
LEFYMSNEYLSKDKYLLRQIRCKKDGYVSIKLMTSFKKMKKLAQTWQVLRSAICRMSKTL
VVSAEGLRIKRREELPEELRKPRKLTSILAIRLPEKYNAVDKLTSLFRIFGEIGLVRLLR
PEKLVPVDLRNYATQVPDIGMSLCAVIEFESATDALEAVRVLKNRHRDITQMRNSEEEAN
DDQEGLPKKETELSEDELEKLKSIQEEQPDLGEMRVALLGPRVRRTLYRQDRNKSTETAS
TSSRFTSEESDSTGMIDVGHDTVISKGVITIGKAQHVTEEGNRAWRGTSAYQHLQGILKS
PRAVRFDSVIRQPRGAQESDGFQLARSFGKRNESV

Nucleotide sequence

Length: 1,728

>Harore.CG.MTP2014.S295.g01166.01.t
ATGAGCGGCCGACAAAGGCAATATCCTAGAATCAACACCAATCGCTATTACGATGCCTCA
TGCAAAAACAGGGGATATTACATCAAGACAGAGATGTCAAGCCAAGGAGTTGCTCCATTT
ACTTCAAATCAGCCATTTCCCGTTCAAGGTTTCAACGGTGGCCAGTACGTCATGATCGTA
CCCGACAACGCGGTATTCGTGCGTCACAGCGGAATGGACAGACACCGCCAACAGCCGTAT
ACATACGTACAAGAACTACGACCACAGAATCACTACAATAATTACGTTCCTGCCACACAA
TGGAGAGCACCAGTACAATTGACAGATACGAGATTGAATCCCAATTCGAAAGAGTTCGTA
CACAGAAAGACAGAATTTGGAAACAAGTCCGCGTCCAGGTTTTCATCGCCGGGGATTGAC
AGCGAAAGAAATATCAGCTCTTGCTCAGAGAGCATGGAAGGTGTATCGACCGGACTCAGC
AACAAATTGCGAAATTTAGGATTAAGATACGAAAGCGGCGACAGTGGAATCGCAGAATCG
TCATCATCCTCCACCATGTGGAGTAGTGACGATGATGTTGACGGTTCAATCTCCGAAGAA
GACAAAAGGGCGTCGCAACAACATGAAAAGATATGGGGCATTGCAGACGACAAAAATTAC
TGGTACAGTGAAAAGGGACTGCAGCCTAATGATTCGATTTGCTACGCAATCGTGAGACAA
TTGGAATTTTACATGTCCAACGAATACCTGAGCAAAGACAAATACTTGTTACGTCAAATT
CGCTGCAAAAAAGACGGCTACGTGAGCATCAAACTGATGACGTCATTTAAAAAGATGAAA
AAGCTAGCGCAGACTTGGCAAGTGCTCCGCAGCGCCATATGCCGGATGTCTAAAACTCTG
GTTGTGAGTGCGGAAGGACTTAGGATCAAACGGAGAGAAGAATTGCCCGAGGAGTTAAGG
AAACCTCGTAAACTAACGTCAATACTGGCAATTCGCCTTCCAGAGAAGTATAACGCTGTG
GACAAACTAACGTCACTCTTCCGAATTTTCGGCGAAATCGGACTGGTGAGGTTATTGCGC
CCGGAAAAGTTAGTCCCTGTGGATCTCAGGAATTATGCAACGCAAGTGCCTGACATCGGA
ATGTCTCTCTGTGCCGTTATCGAATTCGAATCAGCAACCGATGCCCTAGAAGCGGTTCGC
GTACTCAAAAACCGACATAGGGATATCACGCAAATGCGAAATAGCGAGGAGGAAGCAAAT
GATGACCAGGAAGGTTTGCCGAAAAAAGAAACTGAATTGAGCGAAGACGAACTAGAAAAG
CTGAAGAGTATACAAGAAGAGCAACCAGATCTAGGCGAAATGAGAGTAGCGTTATTGGGC
CCTCGTGTGCGGAGAACTCTGTACAGGCAGGACCGCAACAAGTCTACTGAAACTGCTAGT
ACTTCATCAAGATTTACGTCAGAAGAAAGCGACAGCACTGGAATGATCGATGTTGGACAC
GACACCGTTATCAGTAAGGGAGTAATTACAATTGGAAAGGCGCAACACGTGACAGAGGAG
GGGAACAGGGCGTGGAGGGGAACCAGTGCGTACCAACATCTACAGGGAATTCTAAAATCG
CCAAGAGCGGTGCGATTCGATAGCGTGATTAGACAACCGAGAGGTGCTCAAGAATCTGAT
GGATTTCAGCTAGCGAGGAGCTTTGGAAAGAGAAATGAATCTGTTTAA

InterProScan

ProSiteProfiles	La_HTH (IPR006630) - T[227-319] 19.69
SUPERFAMILY	WH_DNA-bd_sf (IPR036390) - T[229-317] 1.18E-17
Gene3D	WH-like_DNA-bd_sf (IPR036388) - T[230-320] 1.3E-21
SMART	La_HTH (IPR006630) - T[231-312] 1.3E-20
Pfam	La_HTH (IPR006630) - T[237-293] 9.5E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LARP6_HUMAN	33.511 %	106	2.5E-24