- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S296.g10549.01.t
Possible name(s)
DYSF; FER1L6; OTOF
Gene model
Location
S296 [67,467 / 74,898]
Amino acid sequence
Length: 627
>Harore.CG.MTP2014.S296.g10549.01.p
MGRRLLKGAVGAVKIAKRGLAHPIRKRKNAKQPIDELQLYDTELENISDYTGFHDLLHSF
DLYRGKREDDADDLVDQKRIVGSFKGAFKIYRSPLGDWVEQPDPILGMFKGLPSNEPIHV
MVRVYVVRANDLHPTDPNGKADPYLMVALGNQKVNDKENYVSKQLNPMFGKTFEFEATFP
MESVLTVQVYDWDLLSADDLIGETKIDLENRFYSKHRATCGISEKYSIFGYNQWRDPQKP
SQVLTKLCKDYKIEGPVFSPGKVKIGKKFYAGPVELEDENGHKKATDEHVALVALRNWNE
IPKVGCPLVPEHVETRSIFSPEKPGIEQGRLELWVDMFPMDMPLPGTAVDISPRKPKGYE
IRVIIWNTDEVVCEDDDFFTGEKMSDIYVKGWLLGDDKQETDIHYRSLTGEGNFNWRFIH
PFNYLIAEEKIVVTKKESVFSWDETEFKIPPRLNLQVWDADHFSADDFLGSLTLDLTHFP
RGAKSASKCSLNMATEEDEAASSNVPMISLFKQRRIKGWWPFTAKNDQDELEITGKVEAE
IVLMTAEEAEKNPAGYGRDEPDPLEKPNRPDTSFVWFMNPLKSLRYLICTRFKWLIIKLF
VLLLLTALLVLFIYSSPSWIMKKIVGA
Nucleotide sequence
Length: 1,884
>Harore.CG.MTP2014.S296.g10549.01.t
ATGGGACGTCGCTTACTGAAAGGAGCTGTTGGAGCAGTTAAAATTGCAAAACGTGGACTC
GCTCATCCGATAAGAAAAAGAAAAAATGCAAAGCAACCAATCGATGAGCTGCAGCTTTAT
GATACGGAGCTTGAGAATATCTCCGATTACACAGGTTTCCACGACCTTTTACATTCGTTC
GATCTCTATCGTGGGAAAAGAGAAGATGATGCTGATGATCTCGTAGATCAGAAAAGAATT
GTGGGTTCTTTCAAGGGAGCTTTCAAGATCTACAGATCACCCCTGGGTGATTGGGTGGAA
CAACCTGACCCCATTCTTGGAATGTTCAAGGGTTTACCCAGCAATGAACCCATTCATGTT
ATGGTACGTGTGTATGTTGTTCGTGCCAACGATCTTCACCCCACTGACCCCAATGGAAAA
GCTGACCCCTATTTGATGGTGGCATTAGGGAACCAGAAAGTAAATGATAAGGAAAACTAT
GTTTCAAAGCAGCTCAACCCAATGTTTGGAAAAACATTTGAATTTGAAGCAACATTCCCG
ATGGAGAGCGTTTTGACAGTTCAAGTTTACGACTGGGATTTGCTCAGTGCCGATGATTTG
ATCGGAGAAACGAAGATTGATCTCGAGAATAGATTTTACAGCAAACACAGAGCAACATGT
GGAATATCTGAGAAATATAGCATTTTCGGTTACAACCAGTGGAGGGATCCTCAGAAGCCG
AGTCAAGTTTTGACGAAACTCTGCAAAGATTACAAGATCGAAGGTCCCGTGTTTTCTCCC
GGAAAAGTTAAAATAGGGAAGAAGTTTTACGCTGGACCAGTTGAACTGGAAGACGAAAAT
GGTCACAAGAAAGCAACAGACGAACATGTTGCCCTCGTCGCTCTAAGAAACTGGAACGAA
ATCCCAAAAGTAGGGTGTCCACTTGTCCCAGAACATGTCGAAACGAGGTCAATATTCAGC
CCCGAAAAACCGGGAATCGAACAGGGACGTCTTGAGCTTTGGGTTGATATGTTTCCAATG
GACATGCCGCTACCAGGAACTGCTGTTGATATTTCCCCAAGGAAACCAAAAGGATACGAA
ATCCGTGTGATTATATGGAACACAGACGAAGTTGTTTGTGAGGATGATGATTTTTTCACA
GGCGAGAAAATGTCTGATATATATGTGAAAGGATGGTTACTCGGCGACGACAAACAAGAG
ACCGATATTCATTACAGATCATTGACTGGTGAAGGAAATTTTAACTGGAGATTTATTCAT
CCATTTAATTATCTCATCGCTGAAGAAAAGATTGTTGTGACGAAGAAAGAATCTGTGTTC
TCTTGGGATGAAACCGAATTTAAAATTCCTCCTCGACTCAACCTCCAAGTATGGGATGCG
GATCATTTCTCTGCTGATGATTTCCTGGGTTCATTGACCCTTGACCTCACCCATTTTCCT
CGGGGAGCAAAGTCGGCATCGAAATGCAGCTTGAACATGGCAACTGAAGAAGATGAAGCG
GCGTCGAGCAATGTTCCAATGATTTCACTGTTCAAACAGCGTAGAATCAAGGGATGGTGG
CCGTTCACTGCAAAGAATGATCAAGATGAACTTGAAATTACTGGAAAAGTTGAAGCTGAG
ATTGTGTTGATGACGGCAGAAGAAGCTGAGAAGAATCCGGCTGGATACGGAAGAGATGAA
CCGGATCCACTGGAAAAACCAAATCGTCCGGATACATCATTCGTCTGGTTCATGAATCCG
TTGAAATCACTTCGATATTTGATCTGCACACGATTCAAATGGTTGATCATTAAACTCTTT
GTCCTCTTGCTCCTCACTGCGCTCCTCGTACTCTTTATTTATTCCTCACCGAGCTGGATC
ATGAAAAAAATTGTTGGAGCATAA
| PANTHER |
Otoferlin (IPR029996) - T[21-626] 0.0 |
| PANTHER |
Ferlin (IPR037721) - T[21-626] 0.0 |
| Gene3D |
C2_domain_sf (IPR035892) - T[120-238] 1.5E-24 - T[342-495] 1.2E-16 |
| SMART |
C2_dom (IPR000008) - T[121-220] 1.6E-11 - T[365-488] 8.4 |
| CDD |
C2E_Ferlin (IPR037724) - T[122-244] 2.2222E-71 |
| ProSiteProfiles |
C2_dom (IPR000008) - T[122-205] 14.734 |
| Pfam |
C2_dom (IPR000008) - T[122-212] 2.2E-19 - T[442-483] 0.0012 |
| PRINTS |
C2_dom (IPR000008) - T[137-149] 8.6E-7 - T[163-176] 8.6E-7 - T[185-193] 8.6E-7 |
| CDD |
C2F_Ferlin (IPR037725) - T[360-491] 4.3046E-76 |
| Pfam |
Ferlin_C (IPR032362) - T[534-624] 7.6E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| OTOF_HUMAN | 66.335 % | 831 | 0 |
| FR1L6_HUMAN | 54.392 % | 653 | 0 |
| FR1L4_HUMAN | 43.556 % | 512 | 6.1E-164 |