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- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S304.g06816.01.t
Possible name(s)
LAMA1; LAMA2; LAMB1
Gene model
Location
S304 [68,814 / 85,047]
Amino acid sequence
Length: 586
>Harore.CG.MTP2014.S304.g06816.01.p
QGYRTFTAHAINKTVDYDFQGIHSRYPDARRAIILLTDGKATDAKDLHGAVMHAERDAGV
VIFAVGVGEYSIDELRILTNHHEKRIFELKNFTQLTNIVYELPESLQRSCDCSEEGSVSE
ECDPCTRRCVCKNNVIGRRCDKCAPGFYNISNSNGCLACMCNPLGTADMNTCDVYNGVCQ
CNQDSNIVGKKCDRCAEGMFGFPECRPCQCNGFSTNCTLESGICVNCTGGRVGDHCEKCR
SGLYLSEKNDCIPCECNGNIDSSDSDSCDSQSGLCLKCLYGTAGPHCENCADYHYRGQSG
TCQKCECDVLGTTRTECVNGSCSCDPVTGQCPCLPNVHGSKCDQCDEGSWHSADGCKRCA
CDVWGSISQSCDENSGKCECMPQNAGDKCELCNYGHARQSQEELCRLCTCDRRGTNSSSC
PSDICSCEAGSGQCSCLSNVIGLSCEKCNDGFWNLGSSDGCEECGCHPEASVSSVCNKLT
GICQCMPGNTGPKCDKCAEGYFKLKPTDKCQVCDCSMYGRDSSACGGGLCMCDPSTGQCP
CLPHVTGRTCDKCEEGFYNLLSMQGCKSCNCHVNGSISTICEKVPN
Nucleotide sequence
Length: 2,039
>Harore.CG.MTP2014.S304.g06816.01.t
CAAGGATACCGCACATTTACTGCTCATGCCATCAACAAAACTGTCGACTACGATTTCCAA
GGCATTCACAGCCGTTATCCTGATGCGAGAAGAGCCATCATATTATTGACTGATGGAAAA
GCCACTGACGCAAAGGATCTCCATGGCGCAGTGATGCACGCGGAGCGGGACGCTGGCGTG
GTAATATTCGCAGTCGGGGTCGGAGAGTACAGCATTGACGAGTTACGCATACTAACAAAT
CACCACGAAAAGCGAATATTTGAACTCAAGAATTTCACACAGCTGACAAACATTGTATAC
GAATTGCCAGAATCTCTGCAGAGAAGCTGTGACTGCTCTGAAGAGGGGAGCGTGAGCGAA
GAGTGTGATCCATGTACTCGTAGATGCGTATGCAAAAATAACGTGATCGGAAGAAGATGT
GATAAATGCGCACCGGGATTTTATAACATATCTAATTCGAATGGATGTTTGGCATGTATG
TGTAATCCGCTGGGAACTGCAGACATGAACACATGCGACGTTTACAACGGCGTTTGTCAG
TGCAACCAAGATTCTAACATCGTTGGCAAGAAGTGCGATCGCTGCGCAGAGGGAATGTTC
GGATTTCCCGAATGTCGGCCGTGCCAGTGCAATGGTTTTTCTACTAACTGCACGCTGGAA
TCCGGGATATGCGTTAACTGCACGGGAGGAAGGGTCGGAGACCACTGCGAAAAATGCCGA
AGCGGACTTTACTTGTCAGAAAAGAACGATTGTATTCCGTGTGAATGTAACGGGAACATT
GATTCCAGTGACTCGGATTCATGCGATTCCCAATCAGGATTGTGCCTGAAGTGTCTTTAT
GGAACAGCCGGACCTCATTGCGAAAACTGTGCCGATTACCATTACCGTGGTCAGAGTGGA
ACGTGCCAAAAATGTGAATGTGATGTCCTTGGAACGACCCGAACTGAATGCGTAAACGGA
TCATGTTCCTGTGACCCTGTTACAGGTCAATGTCCATGCCTTCCAAATGTTCACGGTTCA
AAATGTGACCAATGTGACGAAGGCTCATGGCATTCAGCAGATGGTTGTAAGAGATGTGCT
TGCGACGTCTGGGGATCAATTTCGCAATCATGTGACGAGAACAGTGGAAAATGCGAGTGC
ATGCCACAGAATGCAGGAGATAAGTGTGAATTGTGCAACTATGGTCATGCAAGACAGTCC
CAAGAGGAACTCTGCCGTTTATGTACCTGTGATAGACGAGGAACAAACTCATCCAGTTGC
CCTAGTGATATTTGTTCATGCGAAGCCGGTAGTGGTCAGTGTTCCTGCCTTTCCAATGTA
ATCGGACTGTCTTGTGAAAAATGCAACGATGGATTCTGGAACTTGGGCTCGAGTGACGGC
TGTGAAGAATGTGGGTGTCATCCAGAAGCGTCTGTTTCTTCCGTATGTAACAAGTTGACA
GGGATATGTCAATGCATGCCTGGCAACACCGGACCAAAATGTGACAAATGCGCGGAGGGA
TATTTCAAGCTGAAGCCAACCGACAAATGCCAAGTGTGCGACTGCAGTATGTACGGCCGT
GATTCATCAGCTTGTGGGGGAGGATTGTGCATGTGCGACCCATCAACTGGCCAGTGTCCG
TGTTTGCCACACGTTACCGGAAGAACATGTGACAAATGTGAAGAAGGATTTTATAATTTG
CTATCTATGCAAGGATGCAAGTCTTGTAACTGCCATGTCAACGGATCGATTTCAACGATA
TGTGAAAAGGTACCGAATTAGAAAACAGGCCAGTGTAACTGCAAGATCGGAAACGTCGGA
AAACGATGGAAACCTGCCTGAACGGATACTCAAGAAAGAAATTAAATTCCTTGTGTGAAT
CTAGCACTCTGAATGACGCTCCCGAAGAGCCAGAAGAGACAACAGCTGCCGAGGTAACGT
CAAATACGGAAAAACCACAACCTCCAACAGCAACTACAGAAAAGACACCACCTTCAATAA
CTACTACTGCGACTACTACGACCACTACAAGAAGAACTTTCACCGCATCGCGTATGCCG
| Gene3D |
vWFA_dom_sf (IPR036465) - T[1-112] 4.6E-16 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[1-102] 13.969 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[2-106] 7.87E-16 |
| Pfam |
VWF_A (IPR002035) - T[4-99] 6.9E-12 |
| ProSiteProfiles |
Laminin_EGF (IPR002049) - T[110-158] 18.271 - T[159-207] 11.797 - T[208-253] 10.255 - T[254-304] 13.93 - T[305-358] 16.462 - T[359-407] 10.731 - T[408-463] 13.663 - T[464-512] 15.701 - T[513-568] 17.395 - T[569-586] 7.246 |
| Pfam |
Laminin_EGF (IPR002049) - T[110-156] 4.2E-10 - T[159-204] 3.2E-7 - T[208-251] 0.0018 - T[254-305] 4.8E-9 - T[359-401] 8.2E-6 - T[408-461] 1.5E-6 - T[464-510] 3.7E-10 - T[513-566] 3.0E-8 |
| SMART |
Laminin_EGF (IPR002049) - T[110-156] 6.3E-12 - T[159-205] 8.1E-4 - T[208-251] 1.1E-5 - T[254-302] 4.7E-9 - T[305-356] 2.5E-9 - T[359-405] 0.36 - T[408-461] 2.7E-8 - T[464-510] 2.2E-9 - T[513-566] 2.9E-11 |
| SMART |
EGF-like_dom (IPR000742) - T[111-157] 57.0 - T[160-206] 110.0 - T[207-252] 200.0 - T[267-303] 77.0 - T[306-343] 60.0 - T[409-446] 110.0 - T[463-511] 110.0 - T[514-551] 55.0 |
| ProSitePatterns |
Laminin_EGF (IPR002049) - T[129-161] . - T[331-361] . - T[539-571] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LAMB1_HUMAN | 35.225 % | 201 | 5.14E-55 |
| LAMA1_HUMAN | 33.086 % | 208 | 2.79E-57 |
| LAMA2_HUMAN | 30.988 % | 201 | 9.8E-55 |