- Transcript 'KH2012:KH.S654.1.v1....' >
- Transcript 'KH2012:KH.C3.383.v1....' >
- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S30.g01044.01.t
Possible name(s)
ABCF1; ABCF2; ABCF3
Gene model
Location
S30 [413,290 / 419,128]
Amino acid sequence
Length: 676
>Harore.CG.MTP2014.S30.g01044.01.p
YISVNFKLETEKMPSEAAKRRALKKKEASKKKPTKKTTEENGTLTNGAENGDVSSELQNL
SINSRSCTGVLASHPLATDIHIHNFSCTFHGQVLFEDTNLELNSGNRYGFIGMNGCGKTT
MLRCIGHREIPIPEHIDIFLLDRELDGSEKTPLETVMEVDQERLKLEREAERLMHEDPES
QHLFHIYERLDEIGADVAEVRAGRILHGLGFTAAMQQKKLSDFSGGWRMRVALARALFVK
PYLLLLDEPTNHLDLDACVWLEEELKNFKHILVLISHSQDFLNGVCTNIIHMKDKKLQNY
TGNYDAFIRTKGELEENQMKRYKWEQDQISHMKDYIAKFGHGSAKLARQAQSKEKTLAKM
VDKGLTQKVLSDCTLSFFFPDCGKLAPPVLMVQKVSFRYNDTTPWIYKDLEFGVDLDTRL
ALVGPNGAGKSTLLKLIAGELVPTDGLIRRHSHLKIARYHQHLADHLDVDLSPLDYMMKC
YPHMRDIEQVRKVIGRYGLTGKQQVCPIKNLSDGQICRVVFAWLSYQNPHLLLLDEPTNH
LDIETIDALAEAIVEFNGGMILVSHDFRLISQVANNIWVCENQTATPWEGDILAYKESLK
KRVLKDDKSLTKGKSADHQRVEVSQKKFPSLKTKPNQKSSNMIMGIVPAKKPSKGQKAAT
NGTNGNSRNVDFWDDK
Nucleotide sequence
Length: 2,342
>Harore.CG.MTP2014.S30.g01044.01.t
ATACATTAGCGTCAATTTTAAACTTGAAACTGAAAAAATGCCTTCAGAAGCAGCGAAAAG
ACGAGCACTGAAGAAAAAAGAGGCCTCAAAAAAGAAGCCAACTAAGAAAACTACAGAAGA
AAATGGAACTTTAACGAATGGAGCCGAAAATGGAGATGTTTCGTCTGAACTGCAGAACCT
GTCCATTAATTCTCGCTCTTGCACTGGTGTACTAGCTTCCCATCCTCTTGCCACAGACAT
CCATATTCATAATTTTTCCTGCACTTTCCACGGACAGGTTCTTTTTGAAGACACTAATTT
GGAATTGAATTCTGGAAATAGATATGGATTCATTGGCATGAATGGTTGTGGTAAAACCAC
CATGCTGAGATGTATAGGACATAGAGAAATCCCCATCCCTGAACATATTGACATCTTTCT
CTTGGACAGAGAGTTAGATGGGAGTGAGAAAACTCCACTCGAAACTGTTATGGAAGTCGA
TCAAGAGCGTTTGAAGTTGGAGAGAGAGGCTGAGCGTTTGATGCATGAAGATCCGGAAAG
CCAGCACTTATTCCACATCTATGAACGTCTTGACGAGATCGGAGCTGATGTCGCTGAAGT
CAGAGCGGGAAGAATTTTGCATGGATTGGGATTTACTGCGGCGATGCAGCAGAAAAAGTT
GTCTGATTTTTCTGGTGGTTGGCGGATGAGAGTTGCCTTGGCAAGAGCTCTGTTTGTGAA
GCCATACCTTCTGCTATTGGATGAGCCTACTAATCATCTCGATTTGGATGCATGTGTCTG
GTTGGAGGAAGAACTCAAAAATTTCAAACACATTCTGGTTTTGATTTCTCATTCGCAAGA
TTTTCTCAATGGCGTTTGTACCAACATCATTCATATGAAAGATAAAAAGTTACAAAATTA
CACAGGTAACTATGATGCATTCATACGTACAAAAGGAGAGCTGGAAGAAAACCAAATGAA
AAGATATAAATGGGAACAAGATCAAATCTCGCATATGAAGGATTACATCGCTAAATTTGG
TCACGGCAGTGCAAAATTAGCGAGACAGGCACAGAGTAAAGAAAAAACGCTGGCAAAGAT
GGTTGATAAAGGACTCACCCAGAAGGTTCTTTCTGACTGTACACTCTCTTTTTTCTTTCC
GGACTGTGGTAAACTCGCCCCTCCTGTTCTTATGGTACAGAAAGTTAGTTTTCGATACAA
CGACACAACGCCTTGGATCTACAAGGACTTGGAATTCGGAGTAGATTTGGATACAAGATT
AGCGTTAGTTGGACCAAATGGAGCAGGAAAATCCACTTTACTCAAGCTGATAGCTGGCGA
GCTAGTACCCACGGATGGATTGATTCGTCGTCACAGTCATTTGAAGATAGCTCGTTATCA
TCAGCATTTAGCAGACCATTTAGATGTTGACCTTTCTCCATTGGACTACATGATGAAATG
TTATCCTCACATGAGAGATATTGAACAAGTGAGGAAAGTTATCGGAAGATATGGGCTGAC
AGGGAAACAACAGGTTTGTCCTATCAAAAATCTGTCTGATGGTCAAATATGTCGTGTGGT
TTTTGCTTGGTTGTCGTATCAAAATCCTCATTTGCTCCTGCTTGACGAACCTACTAACCA
TCTTGACATCGAGACCATAGATGCTTTGGCAGAGGCGATCGTCGAATTCAATGGTGGAAT
GATATTGGTGTCTCACGACTTCAGACTCATAAGTCAGGTAGCTAATAATATTTGGGTTTG
TGAAAATCAAACTGCAACACCCTGGGAAGGAGATATTTTGGCTTACAAGGAATCCCTGAA
GAAACGTGTGCTGAAGGATGATAAAAGTCTTACCAAGGGTAAGAGTGCAGATCATCAGAG
AGTGGAGGTTTCCCAAAAAAAATTCCCATCCCTGAAGACAAAACCAAACCAAAAATCATC
CAACATGATTATGGGAATCGTTCCTGCTAAAAAGCCTTCCAAAGGTCAGAAAGCGGCAAC
TAATGGGACCAATGGTAATTCAAGAAATGTAGATTTCTGGGATGATAAATGAAACCATTT
TCTGTAAACTCATACATAAGCAAAATATCTAGGAAAAATGTATAGGATTGGCAATAGTAG
TTTTATGGATATTTTTAGGAACATATTTATTTCAGTCTTTCTCTCGTACTGCATCAGATC
ATACTCCTGTGACGTTATTTTTAAGTTCACATTTTTGTGTATTTATTATTTTGCCATAGC
AGTATTTGTTCCAGTGGAGTTTTGAAGTCTGTTTTGTCATCCTACACAAGTGTATTGCTG
CAACACTGCACATTTAGGAAAACTTGGTTATAATCTGTAAATAAAAAGGTTGTGTGAACA
TA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[73-316] 4.9E-41 - T[374-584] 3.77E-41 |
| ProSiteProfiles |
ABC_transporter-like (IPR003439) - T[80-319] 14.393 - T[390-607] 13.712 |
| Pfam |
ABC_transporter-like (IPR003439) - T[96-251] 1.3E-21 - T[408-539] 1.4E-20 |
| SMART |
AAA+_ATPase (IPR003593) - T[104-303] 2.0E-9 - T[416-584] 6.3E-8 |
| ProSitePatterns |
ABC_transporter_CS (IPR017871) - T[223-237] . |
| Pfam |
ABC_tran_Xtn (IPR032781) - T[290-361] 1.3E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ABCF2_HUMAN | 68.5 % | 850 | 0 |
| ABCF3_HUMAN | 38.769 % | 416 | 3.38E-136 |
| ABCF1_HUMAN | 40.418 % | 365 | 3.51E-115 |