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TRANSCRIPT CARD

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  1. EST 'BW569120'
  2. EST 'FF785763.1'
  3. EST 'FF979309.1'
  4. Transcript 'KH2012:KH.L117.1.v3....'
  5. Transcript 'Harore.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S30.g01044.02.t

Possible name(s)

ABCF1; ABCF2; ABCF3

Location

S30 [413,290 / 419,340]

Sequences

Amino acid sequence

Length: 725

>Harore.CG.MTP2014.S30.g01044.02.p
YISVNFKLETEKMPSEAAKRRALKKKEASKKKPTKKTTEENGTLTNGAENGDVSSELQNL
SINSRSCTGVLASHPLATDIHIHNFSCTFHGQVLFEDTNLELNSGNRYGFIGMNGCGKTT
MLRCIGHREIPIPEHIDIFLLDRELDGSEKTPLETVMEVDQERLKLEREAERLMHEDPES
QHLFHIYERLDEIGADVAEVRAGRILHGLGFTAAMQQKKLSDFSGGWRMRVALARALFVK
PYLLLLDEPTNHLDLDACVWLEEELKNFKHILVLISHSQDFLNGVCTNIIHMKDKKLQNY
TGNYDAFIRTKGELEENQMKRYKWEQDQISHMKDYIAKFGHGSAKLARQAQSKEKTLAKM
VDKGLTQKVLSDCTLSFFFPDCGKLAPPVLMVQKVSFRYNDTTPWIYKDLEFGVDLDTRL
ALVGPNGAGKSTLLKLIAGELVPTDGLIRRHSHLKIARYHQHLADHLDVDLSPLDYMMKC
YPHMRDIEQVRKVIGRYGLTGKQQVCPIKNLSDGQICRVVFAWLSYQNPHLLLLDEPTNH
LDIETIDALAEAIVEFNGGMILVSHDFRLISQVANNIWVCENQTATPWEGDILAYKESLK
KRVLKDDKSLTKGKSADHQRVEVSQKKFPSLKTKPNQKSSNMIMGIVPAKKPSKGQKAAT
NGTNAKYLGKMYRIGNSSFMDIFRNIFISVFLSYCIRSYSCDVIFKFTFLCIYYFAIAVF
VPVEF

Nucleotide sequence

Length: 2,473

>Harore.CG.MTP2014.S30.g01044.02.t
ATACATTAGCGTCAATTTTAAACTTGAAACTGAAAAAATGCCTTCAGAAGCAGCGAAAAG
ACGAGCACTGAAGAAAAAAGAGGCCTCAAAAAAGAAGCCAACTAAGAAAACTACAGAAGA
AAATGGAACTTTAACGAATGGAGCCGAAAATGGAGATGTTTCGTCTGAACTGCAGAACCT
GTCCATTAATTCTCGCTCTTGCACTGGTGTACTAGCTTCCCATCCTCTTGCCACAGACAT
CCATATTCATAATTTTTCCTGCACTTTCCACGGACAGGTTCTTTTTGAAGACACTAATTT
GGAATTGAATTCTGGAAATAGATATGGATTCATTGGCATGAATGGTTGTGGTAAAACCAC
CATGCTGAGATGTATAGGACATAGAGAAATCCCCATCCCTGAACATATTGACATCTTTCT
CTTGGACAGAGAGTTAGATGGGAGTGAGAAAACTCCACTCGAAACTGTTATGGAAGTCGA
TCAAGAGCGTTTGAAGTTGGAGAGAGAGGCTGAGCGTTTGATGCATGAAGATCCGGAAAG
CCAGCACTTATTCCACATCTATGAACGTCTTGACGAGATCGGAGCTGATGTCGCTGAAGT
CAGAGCGGGAAGAATTTTGCATGGATTGGGATTTACTGCGGCGATGCAGCAGAAAAAGTT
GTCTGATTTTTCTGGTGGTTGGCGGATGAGAGTTGCCTTGGCAAGAGCTCTGTTTGTGAA
GCCATACCTTCTGCTATTGGATGAGCCTACTAATCATCTCGATTTGGATGCATGTGTCTG
GTTGGAGGAAGAACTCAAAAATTTCAAACACATTCTGGTTTTGATTTCTCATTCGCAAGA
TTTTCTCAATGGCGTTTGTACCAACATCATTCATATGAAAGATAAAAAGTTACAAAATTA
CACAGGTAACTATGATGCATTCATACGTACAAAAGGAGAGCTGGAAGAAAACCAAATGAA
AAGATATAAATGGGAACAAGATCAAATCTCGCATATGAAGGATTACATCGCTAAATTTGG
TCACGGCAGTGCAAAATTAGCGAGACAGGCACAGAGTAAAGAAAAAACGCTGGCAAAGAT
GGTTGATAAAGGACTCACCCAGAAGGTTCTTTCTGACTGTACACTCTCTTTTTTCTTTCC
GGACTGTGGTAAACTCGCCCCTCCTGTTCTTATGGTACAGAAAGTTAGTTTTCGATACAA
CGACACAACGCCTTGGATCTACAAGGACTTGGAATTCGGAGTAGATTTGGATACAAGATT
AGCGTTAGTTGGACCAAATGGAGCAGGAAAATCCACTTTACTCAAGCTGATAGCTGGCGA
GCTAGTACCCACGGATGGATTGATTCGTCGTCACAGTCATTTGAAGATAGCTCGTTATCA
TCAGCATTTAGCAGACCATTTAGATGTTGACCTTTCTCCATTGGACTACATGATGAAATG
TTATCCTCACATGAGAGATATTGAACAAGTGAGGAAAGTTATCGGAAGATATGGGCTGAC
AGGGAAACAACAGGTTTGTCCTATCAAAAATCTGTCTGATGGTCAAATATGTCGTGTGGT
TTTTGCTTGGTTGTCGTATCAAAATCCTCATTTGCTCCTGCTTGACGAACCTACTAACCA
TCTTGACATCGAGACCATAGATGCTTTGGCAGAGGCGATCGTCGAATTCAATGGTGGAAT
GATATTGGTGTCTCACGACTTCAGACTCATAAGTCAGGTAGCTAATAATATTTGGGTTTG
TGAAAATCAAACTGCAACACCCTGGGAAGGAGATATTTTGGCTTACAAGGAATCCCTGAA
GAAACGTGTGCTGAAGGATGATAAAAGTCTTACCAAGGGTAAGAGTGCAGATCATCAGAG
AGTGGAGGTTTCCCAAAAAAAATTCCCATCCCTGAAGACAAAACCAAACCAAAAATCATC
CAACATGATTATGGGAATCGTTCCTGCTAAAAAGCCTTCCAAAGGTCAGAAAGCGGCAAC
TAATGGGACCAATGCAAAATATCTAGGAAAAATGTATAGGATTGGCAATAGTAGTTTTAT
GGATATTTTTAGGAACATATTTATTTCAGTCTTTCTCTCGTACTGCATCAGATCATACTC
CTGTGACGTTATTTTTAAGTTCACATTTTTGTGTATTTATTATTTTGCCATAGCAGTATT
TGTTCCAGTGGAGTTTTGAAGTCTGTTTTGTCATCCTACACAAGTGTATTGCTGCAACAC
TGCACATTTAGGAAACTTGGTTATAATCTGTAAATAAAAAGGTTGTGTGAACATATGTAG
ATTTCATAAGAGACAGGCAGGTACATGTAGTCTGCAAGCGCTGGCTGCTGATATTCAGGG
ATAACAGCCAAACAGAGCTTTGGGGATTTATGATGCTCTTCATTAGTGGATAAAGTGCTC
TGCCTTGCCTCTTTATGAGCATGCACAATCTGTATACTCTGTTAGCTGATTAGACTTCAT
CTTGAATTTGGTA

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[73-316] 5.76E-41 - T[374-584] 4.32E-41
ProSiteProfiles
ABC_transporter-like (IPR003439) - T[80-319] 14.393 - T[390-607] 13.712
Pfam
ABC_transporter-like (IPR003439) - T[96-251] 1.5E-21 - T[408-539] 1.6E-20
SMART
AAA+_ATPase (IPR003593) - T[104-303] 2.0E-9 - T[416-584] 6.3E-8
ProSitePatterns
ABC_transporter_CS (IPR017871) - T[223-237] .
Pfam
ABC_tran_Xtn (IPR032781) - T[290-361] 1.5E-20

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ABCF2_HUMAN 68.5 % 852 0
ABCF3_HUMAN 38.769 % 416 1.15E-135
ABCF1_HUMAN 40.418 % 363 3.55E-114