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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S31.g01023.02.t

Possible name(s)

SRSF1; SRSF3; SRSF7

Gene model

Harore.CG.MTP2014.S31.g01023

Location

S31 [363,427 / 363,848]

Sequences

Amino acid sequence

Length: 117

>Harore.CG.MTP2014.S31.g01023.02.p
MARNGNLDCKIYVGNLGDQGSKGELERVFSYYGHLKNVWVARNPAGFAFVEFLDQRDAVD
AVRALDGRTICGVRARVEMSSGATRKGGRSSGGGRFSNHNRRDYEYDRRRRLIFRLF

Nucleotide sequence

Length: 354

>Harore.CG.MTP2014.S31.g01023.02.t
ATGGCAAGAAACGGAAATCTAGACTGCAAGATTTACGTAGGAAATTTAGGTGACCAAGGT
TCCAAGGGAGAATTAGAACGTGTTTTCAGTTATTACGGACACCTGAAAAACGTTTGGGTT
GCAAGAAATCCTGCTGGTTTTGCGTTTGTTGAGTTTTTGGATCAAAGAGATGCTGTAGAT
GCAGTACGTGCCTTAGATGGACGAACTATATGTGGAGTAAGAGCAAGAGTTGAAATGTCC
TCTGGTGCAACTCGTAAGGGTGGACGTAGTAGTGGCGGAGGTAGATTCTCTAATCACAAC
AGAAGAGATTACGAATATGACCGCAGAAGAAGGTTAATATTCCGACTTTTTTAA

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[4-83] 2.1E-21
ProSiteProfiles
RRM_dom (IPR000504) - T[9-82] 15.716
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[9-110] 4.16E-23
SMART
RRM_dom (IPR000504) - T[10-78] 1.0E-17
Pfam
RRM_dom (IPR000504) - T[11-72] 7.5E-15

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SRSF3_HUMAN 69.88 % 125 7.72E-38
SRSF7_HUMAN 63.636 % 115 2.14E-33