- Transcript 'Boleac.CG.SB_v3.S297...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S332.g05941.02.t
Possible name(s)
MTREX; SKIV2L
Gene model
Location
S332 [67,219 / 75,942]
Amino acid sequence
Length: 1,055
>Harore.CG.MTP2014.S332.g05941.02.p
MAGSVEDMFDVFEDNSSKTADDVPQTSKSVLKTDARKRKLEDETEEPEQTEEKVTKPDDF
SKEKIKAKLRVEKENYDESRKKSAAAEQTDDLSNILDSLPKVETNSVESLISGCTHDVAH
TIGVEVPPLRPREGPAAKEYKFILDPFQQESLLCLDNNQSVLVSAHTSAGKTVVAEYAIA
MSLRDKQRVIYTTPIKALSNQKYRELYEEFSDVGLMTGDVTINPTASCLVMTTEILRSML
YRGSEIMREVAWVVFDEIHYMRNKERGVVWEETIILLPDNVRYVFLSATIPNARQFAEWI
CHLHKQPCHVVYTDYRPVPLQHYVFPASGDGLHLIVDEHGNFREDNFNTAMGILRDAGDN
SKSDFSRKGRKGGQTGESSCYKIIKMVMERSFQPVIVFSFSKKECEFYALKVAKLDFNSG
DEKKLVSEVFTNAIDSLSEEDRTLPQVEAVLPLLKRGIGIHHGGLLPILKETIEILFSEG
LIKCLFATETFAMGVNMPARTVLFTSCRKFDGKDFRWITGGEYIQMSGRAGRRGMDDRGI
VIVMVDEKMSPSVGKSLLKGSPDPLNSAFRLTYNMVLNLLRVEEINPEYMLEKSFYQFQH
YKAVPELLEKVNKLDAEYESIDIQDEDMAMNYYKIRQQLSKLAGQLEEFVHLPKYCLPFL
QPGRLVKISNGTDDFGWGIIINFQKAPKSKSTRNPIEEEQDEKQFVVDVLVHVAMDSIRN
KDFGTPRPAGWNCSTKNEMAVLPFMLHLIKSISSVRLYLPKDLRPPDNRQSLLRSLQEVE
KRFPDGIPLLDPVEDLGIRDDRLRNVVRKIEAFEKRLYQHPLHENKHLKKVYRQCEEKMK
LANDIKDAKRELKKARTILQMDELKCRKRVLRRLGYATLADVIETKGRVACEISSGDELL
LTELIFNGVFNSLKVEQCCALLSCFIFEEKAKEVPKLSEELSNPLRKMHEAARRIAKISA
EAKMEIDEEEYVDSFKWTLMDVVHSWCNGSSFGQICQMTDTFEGSIIRCMRRLEELLREM
CHAAKAIGNTQLENKFAEGITRIKRDIVFAASLYL
Nucleotide sequence
Length: 4,657
>Harore.CG.MTP2014.S332.g05941.02.t
ACTCAAACCCTCGATTCAAAGAGTAGCCATATCACGCCCCGACCTTTACCTTCGAATTGT
GAGCGCAACACGCCGAATTATATATACTATGTAAATAGAGATTAAACAATTAAAACTCCA
ACTTGCTCTAAATAGATCTCTTTAGGCTTAGTATACTGTTCATATTTTCATGTGTGTTGT
TTAAATGTCTGATTCTTTTATTGTCTCCCGGGCCCAGATCTACGTTGTGGGCACTAAATA
AATGTCTTGTGAGACTCTGGGAGGGAAAAGCCTCAATATACACCGCATGAGACATATTAC
ATTATGTTAGTCATTTAATTCTGCGTAATTCGATATAAAGTTTATTTTGAGCAGATATTG
TAAAGAGTTATTTATTCTTGTCGCACATCCTCCACATATCCGTAGCTCGGGCTGGGCACT
TTGGTAGGCTATGGGGGAAAATGCCTCAATATACAGAAGATCCTGTAAGCTGACATGCGG
CTCCGGACATTCTTTAAAAGAACAGCTGAATTCTTACTTTTGTTTTGAATTGTATCATAC
TTTCCATTTTAGAATGGTTGCTTTGCTATTTTTAATCTATTTGCTATGCAGTAACGAGAT
GTTTAATATCGTTTACCTCATACATATCCTATCTGGCTATGAATCTGCCTTAGATCATAG
TGGTGCGAGGCAAGTTAGCATGTGTTTGTGTTATTCTAAGTGCTGTACGCTGTTAAATAA
TATTTTCTTTCCTCTTTCAGTGCATTGATAACAACAATATCAGTACATAGATTCTAAAAC
AAACGAATACAAACATGGCGGGGTCTGTCGAAGATATGTTTGATGTTTTCGAAGATAATT
CGTCTAAAACAGCAGACGACGTACCACAGACATCAAAATCAGTATTGAAGACCGATGCTC
GTAAAAGAAAGCTTGAAGATGAAACGGAAGAACCTGAACAAACTGAAGAAAAAGTCACGA
AGCCAGATGATTTTTCTAAAGAAAAAATAAAGGCTAAACTTCGTGTGGAAAAGGAGAATT
ATGACGAGTCTCGGAAGAAATCGGCTGCTGCTGAACAGACTGATGATTTGTCAAACATTT
TAGATTCACTACCTAAAGTTGAAACAAACTCAGTAGAGTCACTCATTTCTGGTTGTACAC
ATGATGTCGCTCACACAATTGGGGTCGAAGTCCCTCCGCTACGACCCAGAGAGGGTCCGG
CTGCGAAGGAATACAAGTTTATATTGGATCCGTTTCAGCAAGAATCTTTATTATGCTTGG
ATAACAATCAATCAGTACTCGTTTCAGCTCACACATCGGCAGGGAAGACGGTTGTCGCTG
AGTACGCTATTGCCATGTCACTTCGAGATAAGCAAAGAGTGATATACACCACTCCAATTA
AGGCACTCAGCAATCAGAAATACAGGGAGCTGTACGAAGAGTTCTCTGACGTGGGCCTGA
TGACGGGCGACGTGACAATAAATCCAACTGCATCCTGTCTTGTCATGACAACTGAGATTC
TCCGAAGCATGCTCTACAGAGGTTCTGAAATTATGCGTGAAGTAGCATGGGTTGTTTTTG
ATGAGATTCATTACATGAGAAATAAAGAAAGAGGAGTCGTTTGGGAGGAAACTATCATCC
TTCTTCCTGACAATGTGCGATACGTGTTCCTCTCGGCGACCATTCCGAACGCGAGACAGT
TCGCCGAATGGATATGCCACCTGCACAAACAGCCCTGCCATGTCGTATACACCGACTACC
GGCCTGTGCCGTTGCAGCATTACGTGTTTCCTGCTAGTGGTGATGGGTTGCACTTGATTG
TAGACGAACATGGTAACTTTCGTGAGGATAATTTCAACACAGCTATGGGAATTTTAAGAG
ATGCAGGAGACAACTCGAAGAGCGATTTTAGCCGAAAGGGAAGAAAAGGCGGACAGACGG
GCGAATCCAGCTGCTATAAGATCATTAAAATGGTTATGGAGAGGAGTTTCCAGCCTGTCA
TTGTGTTCAGCTTCAGTAAAAAGGAATGCGAATTCTACGCTCTCAAAGTTGCAAAACTGG
ATTTTAATTCAGGAGACGAGAAGAAGCTAGTGTCAGAGGTGTTTACTAATGCGATCGACT
CTCTGTCAGAAGAGGACCGAACTCTTCCTCAAGTGGAAGCTGTTCTCCCGTTGTTGAAAA
GAGGCATCGGAATTCATCATGGCGGTCTTCTTCCCATACTGAAGGAAACCATAGAGATTC
TCTTTTCCGAAGGACTGATAAAGTGTCTCTTTGCGACTGAGACATTTGCTATGGGTGTAA
ACATGCCTGCTCGCACTGTACTGTTCACTAGTTGCAGGAAATTCGATGGCAAAGACTTCC
GATGGATCACTGGAGGGGAATACATCCAGATGAGTGGAAGAGCTGGCAGGCGTGGCATGG
ATGACAGGGGAATTGTGATCGTCATGGTGGATGAAAAAATGTCACCAAGCGTTGGAAAAA
GTTTGCTTAAGGGATCACCAGATCCTCTCAATTCTGCCTTTCGCTTAACTTACAACATGG
TGCTTAACTTACTTCGAGTGGAGGAGATCAACCCCGAGTACATGCTGGAAAAATCATTTT
ACCAGTTCCAGCATTACAAAGCCGTTCCAGAACTGCTAGAAAAGGTGAATAAATTGGATG
CAGAATATGAGTCAATTGATATCCAAGATGAAGACATGGCTATGAATTATTACAAAATTC
GACAGCAGCTAAGCAAGTTGGCTGGGCAGCTGGAGGAATTTGTTCATCTACCAAAGTATT
GCCTCCCTTTTTTGCAGCCTGGCAGACTGGTCAAGATTAGTAACGGCACTGATGATTTTG
GCTGGGGAATTATTATCAACTTCCAGAAAGCTCCAAAATCAAAAAGCACTCGAAATCCCA
TTGAGGAAGAGCAGGATGAAAAACAGTTTGTTGTCGACGTGCTGGTTCATGTTGCTATGG
ACAGCATAAGGAACAAAGATTTTGGGACACCCAGGCCAGCTGGTTGGAATTGTTCTACGA
AAAACGAGATGGCTGTTCTACCTTTCATGCTTCATTTGATCAAATCGATAAGCAGCGTCA
GGCTCTATCTGCCCAAAGACCTGCGACCTCCAGATAACAGACAGTCTCTGCTGAGATCTT
TGCAGGAAGTCGAAAAAAGATTTCCAGATGGAATTCCTCTCCTGGATCCCGTCGAAGACC
TTGGGATTCGTGACGACAGGCTACGAAACGTCGTCAGGAAGATAGAGGCGTTCGAAAAGC
GTTTGTACCAGCATCCTCTCCACGAGAATAAACATCTCAAGAAAGTCTACAGACAGTGTG
AAGAAAAAATGAAGCTTGCAAATGACATCAAGGATGCTAAGAGGGAACTCAAGAAAGCAA
GAACAATCTTGCAAATGGATGAATTGAAATGCAGAAAGAGAGTTTTAAGGCGGCTCGGAT
ATGCTACGTTAGCGGATGTAATAGAAACTAAAGGCAGAGTCGCTTGTGAAATTAGCTCTG
GTGATGAATTGCTTTTAACTGAGTTGATTTTCAATGGCGTGTTTAACAGTCTCAAAGTGG
AACAGTGTTGTGCTCTACTGAGTTGTTTCATTTTCGAGGAAAAGGCTAAGGAAGTTCCAA
AATTATCAGAAGAATTGTCAAATCCCCTGCGTAAGATGCACGAGGCGGCTAGGCGAATCG
CAAAGATATCCGCCGAAGCAAAGATGGAAATCGATGAGGAGGAATATGTAGATTCTTTCA
AATGGACACTGATGGATGTGGTTCACTCGTGGTGTAACGGATCGTCATTTGGGCAAATCT
GTCAAATGACTGATACATTTGAAGGGAGCATCATTCGATGTATGAGGCGACTGGAAGAGC
TGCTTAGGGAGATGTGTCACGCAGCCAAAGCAATCGGTAACACTCAACTGGAAAATAAAT
TCGCAGAGGGCATAACACGAATCAAGCGAGATATTGTTTTCGCTGCGAGTTTATACCTAT
GAAGCTGGTGTGTGGGAGCTTTTGCTCACCTGGTTTAACAGACGGATAAATGGAGAATCA
AGCTTGAACTTTGCGATAAGGTGATAATTTATACCAGCCTCCTGCTAGATCCAAACCATA
ATACTACTGGATTCGTCTCTGTTGTTTTAATTGTTCTCTTATTTCGCAGTGTGTACTCAG
TATAAATGTAAGAATTTGCGTCCGCTGTGTGGGGCAGACAAGGCAGTTGCCTTCCTTGGA
TAAGGCATTCTTACCATGGGTGGTTGGAACCTTATAATTATGACCCTATTGGCTGTCAGG
AATTTCGAATATCGATTAAATAGGAGTATATTTCCCTATGCCACCCATTAAAAAGCCCTT
TCGTATACGTACCCAACTCTAGAATTTCGAATGTTTTTCTTTACACAGTAAATACCTTCA
TATAAGAACTGAAAACCTTATCAAGCAAGGCAAAGGGGTAATAATCAGTGGCTGGGGGAT
TTTATAAGCTGTTTCTTCATCCAAATAAAAAATTAGGCACCTATATCCTCTTTCGTTGTT
TACAGTTTGAAACTTCTGATTACTGGACTGCATATTAGTAACTCATCACATGAGGCATAG
CTGTAGTTTCGTAATTTTAGTAGTAATCCAGTGATAGGTATTACGATACATGTCTACAAG
GAGAGCAATGGAATAAATTTTGGATAATGGTGGATAA
| PIRSF |
Ski2-like (IPR016438) - T[4-1055] 0.0 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[140-323] 2.0E-31 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[146-291] 3.2E-16 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[152-308] 23.757 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[155-293] 1.32E-47 - T[358-414] 1.32E-47 - T[454-548] 1.32E-47 |
| CDD |
Helicase_C (IPR001650) - T[380-544] 7.97341E-15 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[411-583] 11.923 |
| Pfam |
Helicase_C (IPR001650) - T[429-534] 1.2E-6 |
| SMART |
Helicase_C (IPR001650) - T[445-534] 7.2E-18 |
| Pfam |
rRNA_proc-arch_dom (IPR025696) - T[588-854] 6.8E-88 |
| SMART |
Ski2_C (IPR012961) - T[878-1055] 4.5E-95 |
| Pfam |
Ski2_C (IPR012961) - T[881-1050] 2.5E-58 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MTREX_HUMAN | 71.4 % | 1492 | 0 |
| SKIV2_HUMAN | 42.757 % | 465 | 6.17E-145 |
| DDX6L_HUMAN | 36.842 % | 90.1 | 4.04E-18 |