- Transcript 'Phmamm.CG.MTP2014.S6...' >
- Transcript 'KH2012:KH.C4.420.v1....' >
- Transcript 'KH2012:KH.C5.42.v3.A...' >
- Transcript 'KH2012:KH.S115.16.v1...' >
- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S336.g00078.01.t
Possible name(s)
CLVS1; RLBP1; TTPAL
Gene model
Location
S336 [100,271 / 103,475]
Amino acid sequence
Length: 339
>Harore.CG.MTP2014.S336.g00078.01.p
MECYYFKRATIVFVFVSEKSKINFIYAGRNWLFLMRIINNYFLLLLSFHITVFYPFPCFK
IYECILSSEILEKAVVELNEPRDNVKRLEAIDELKSKFLTEHKGYPIIRSDDEFILRFLR
AKKFNQEKALTVMLNYHKCRKEYRDIFDLVDDPSRMKSAIDLGCVYPLAGKDKQGRSVIL
YRSGLLDESNLDLNEIVALYIMTLEKLLEEEEFQISGLNVIEDYYKFGMRLMAKLSMSVM
RKLTYLTQDAMPVRLKAANVVNENTVFDVIYALFKPLVKKKLIERVVLHGKEYTTLHEQI
DPAFLPPYLGGTGADADESGKAWGQELLHWEPKLEDTPL
Nucleotide sequence
Length: 1,965
>Harore.CG.MTP2014.S336.g00078.01.t
ATGGAATGTTATTACTTTAAGCGCGCAACGATAGTGTTTGTATTTGTTAGCGAGAAGTCA
AAAATCAATTTTATTTACGCTGGCCGGAATTGGCTATTTTTGATGAGAATTATTAATAAT
TATTTCTTGCTTCTTCTTTCCTTCCATATAACTGTTTTCTATCCATTTCCGTGTTTTAAA
ATATACGAATGCATATTGTCATCCGAAATCCTTGAAAAAGCTGTAGTCGAGCTAAATGAG
CCAAGGGACAACGTAAAGCGTTTGGAAGCAATTGATGAGTTAAAAAGTAAATTCTTGACT
GAACACAAGGGATACCCCATTATACGAAGCGACGATGAATTCATTCTTCGATTTCTCAGA
GCAAAGAAGTTTAATCAGGAAAAAGCCTTGACAGTTATGCTCAATTACCACAAATGTCGA
AAGGAATACAGAGATATTTTTGACCTTGTTGATGACCCTTCCAGAATGAAATCAGCAATT
GATCTAGGATGTGTTTATCCCCTTGCAGGAAAAGACAAGCAAGGAAGAAGTGTTATTTTA
TATCGTTCAGGTTTATTGGATGAATCTAACTTGGATTTAAATGAAATTGTTGCTTTGTAC
ATCATGACCCTAGAAAAACTTCTAGAAGAAGAAGAATTCCAGATCAGTGGCCTGAATGTT
ATTGAAGACTATTACAAATTTGGCATGAGGCTCATGGCAAAACTTTCAATGTCAGTAATG
AGAAAATTGACCTATTTGACACAGGATGCAATGCCCGTCCGCCTGAAAGCTGCTAATGTT
GTCAATGAAAATACGGTCTTCGATGTTATTTATGCCCTGTTTAAACCACTGGTCAAGAAA
AAATTGATAGAAAGAGTTGTCCTGCATGGCAAAGAATATACGACTCTTCATGAACAGATA
GATCCTGCTTTCCTACCACCATACTTAGGTGGAACAGGTGCGGATGCTGATGAATCAGGG
AAGGCTTGGGGTCAGGAGTTATTACATTGGGAACCTAAGTTGGAAGATACTCCGCTATAA
TGTTTAATTACTTTAATAATTATTGCTTGCGCTTCATATTATGATTTATCACAGAGAAGT
TGACTGACATTTTTCTATGCAAATATTGGCATAATATAAAATATTTTTCTCAATTACACA
ATATATGTGTGTGATGTGGCCTTCACAACAATGCTGATAATTACAGCTGCAACTTGACAT
AAATATTTATTTACATTTAATATTTTGCAGATGAGTTGAATACAGCTCTGATAATACACT
GCTAGTTAGAATATCATGAACACAAGTGCACTGGAAAGACCCTGAATAAAAGTTTGTGTC
TTGTATCTTCACCATCTAAATCCAGTTATTTTTCAACTAGAAATCAAATAATATTGGTTG
CTAACACTACTGGGGATTCTTAAAATGGACTGTTGTGCAAGTTTCCTTTTGTATTTTACC
ATGTCATGCTATACCATGAATGAAATTTCACAATCAATATTTGGAAGACTGCTGTCATGT
ATATGCATAGCCATTTAAGCAATAACATCGTAATTATCAAGTCATTGATCAATATCTTTG
TTGCCATTTTATTATATAAAGTGTTGTTTCCCAATTGTAGGATTACTAAGTAACATCGTA
TTTTGTTTCCATGCAACTGTTGTCACCAATCCATATAAGTAGCTTCTTGTAATCATATCT
ACGCCATTTTCTGTTCATAAGACAATCGTGTAAGGCTAACTGTCTGTAGCCTGGTAACGT
TACGTAAATCGGTATCTGGGAAGTGTGCAAGTTGACGATCACCAAATAAGAATTGCTTTG
TAAACAAGTGGCGTACAGCTAACAAACCACAGTCGTCAATATTAAAAATAACAGCCGAAA
ATGTAAGTATACGTGACAATTCCGGAAGGTACTTTAGCACAGTTCTGGCGTTGCATTACC
TAATTTGCTGTCGTGGACTATATCAAAATGCGCACTAAAAACAGC
| SUPERFAMILY |
CRAL/TRIO_N_dom_sf (IPR036273) - T[59-144] 1.02E-15 |
| Pfam |
CRAL/TRIO_N_dom (IPR011074) - T[91-132] 2.8E-7 |
| SMART |
CRAL/TRIO_N_dom (IPR011074) - T[111-136] 3.9E-8 |
| Gene3D |
CRAL-TRIO_dom_sf (IPR036865) - T[143-321] 6.4E-51 |
| ProSiteProfiles |
CRAL-TRIO_dom (IPR001251) - T[153-317] 17.091 |
| SUPERFAMILY |
CRAL-TRIO_dom_sf (IPR036865) - T[156-332] 3.66E-42 |
| SMART |
CRAL-TRIO_dom (IPR001251) - T[156-314] 4.5E-23 |
| CDD |
CRAL-TRIO_dom (IPR001251) - T[161-312] 1.14591E-23 |
| Pfam |
CRAL-TRIO_dom (IPR001251) - T[164-312] 5.9E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TTPAL_HUMAN | 32.601 % | 156 | 5.93E-45 |
| RLBP1_HUMAN | 33.103 % | 148 | 4.42E-42 |
| CLVS1_HUMAN | 33.582 % | 143 | 7.41E-40 |