- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S358.g11454.01.t
Possible name(s)
DDX58; DHX58; IFIH1
Gene model
Location
S358 [30,976 / 39,631]
Amino acid sequence
Length: 1,089
>Harore.CG.MTP2014.S358.g11454.01.p
MHSGLFDKKDVVIKRLEYDNIKEDSKPDGKLTVEVKILRKIEHENIIKYLYTDYDDDFLY
IALAKCSLTLQDHIEKKKNECTVSLEPYEILRQTTAGLHYLHCKCLPDNIVHRDLKPSNI
LFFCHNGVWQVKITDFGISKFLPVDRTSVTSTSKKGTIGFMAPEVLRRGEYRKESDLFSL
GIVFFYTLSEGAHPYGSDTLKIEADIRDGEKPSYDALQTKYVDDVTSLVKSMLSHDWKKR
PSVEDVLAHHIFWPDDKKLDFLQEVSDYLEDRQKHQRLINKLDKEGKNVTGTNWIDTISE
KSPVLKATLEKQNNRGGKKAKNVEESKDETAVEGVSKRTKKVGKPPGMQELLRQIRNWEE
AAKKKDTPVVQKIVLRDYQKELAQKAVDGHNSLIVAPTGSGKTIVAKEIIEKHLMKSDSK
SVIFFTAETTLARQQFDFFSRHIESEDHEKVKMTYIIGDKEMEIPVGQAIKRNRLIVLTP
QILIDELRRPLSYISFNNISMMIFDECHKTTKKHPYKIIMDMLMDFLHDNPDSKMQIVGL
TASPGVGKGKTREKVMDNLITLLANLNVTICPTTVVTYIDELKQHQNEIKESFVRVEDEV
DIFTSKILKAMELIEQKIRDQDVLGTQVKEPPLNKGKQMYENWVIDLIQYSRSQIRDQEL
SWLITTYAEHLRMYHTLLYYTKHIPNAMDLTDSKMNFNQEGHTMKFLIKINRELRQNQNL
AKVPLMHRLFDILKREFRENPESRCIIFVRRKKVAARLVEEMKENSEFSHLEPKLLTGVR
EHSNLGGMTKVEQEDSLNAFRDGISKVLVATSVAEEGLDIKACNLVIMYNYVTNEIGRIQ
RAGRGRAENSRSILIASFDSNHIKQEKDNEICEEASKIAIQDVGDMPLEYLALQIKEIQK
KHRKERKRETEAKIRKTMEAAKWNLLCGKCKTVITSADHLRHINNQHKVVIDETLFTRIR
ETPWSQSRELAADVDAVASLFCVQRNCREKLGLTMQYQSKRYPSLTIKALVLQNVETEEM
RMASTWSKCPFAVSKSIDSDDDDTEKIGVQAEDESYTESPIDFGMIETDFAKSDEISDYV
ILESLDCNQ
Nucleotide sequence
Length: 3,270
>Harore.CG.MTP2014.S358.g11454.01.t
ATGCATAGTGGCCTTTTTGACAAAAAAGATGTCGTGATTAAGCGGTTGGAATATGATAAC
ATAAAAGAAGATTCGAAACCAGATGGAAAACTAACTGTGGAAGTGAAAATTCTACGAAAA
ATCGAACATGAAAATATCATCAAATATCTCTACACGGATTATGACGATGATTTTTTGTAC
ATTGCTCTTGCAAAGTGCTCTTTAACTCTTCAAGATCATATTGAAAAAAAGAAGAATGAG
TGTACAGTTTCTCTCGAGCCGTATGAAATTTTGCGCCAAACCACCGCAGGACTTCACTAT
TTACACTGCAAATGTCTGCCAGATAATATAGTTCATCGAGATTTGAAGCCATCCAATATT
CTGTTTTTTTGCCACAATGGGGTGTGGCAAGTTAAGATAACTGACTTTGGTATAAGCAAA
TTTCTGCCAGTCGATAGAACATCGGTTACTTCCACAAGCAAGAAGGGAACAATAGGGTTT
ATGGCCCCGGAAGTTCTCAGACGGGGTGAATATAGGAAAGAATCAGACCTGTTCTCCCTT
GGGATTGTGTTTTTCTACACACTAAGTGAAGGGGCTCATCCTTATGGATCAGATACATTG
AAAATAGAAGCTGATATCCGCGATGGAGAAAAGCCATCGTATGATGCTCTCCAAACAAAA
TATGTGGATGATGTCACTTCACTTGTTAAATCTATGCTAAGTCACGACTGGAAAAAAAGA
CCGAGCGTTGAGGATGTGTTAGCACACCACATTTTTTGGCCAGATGACAAGAAACTTGAC
TTTCTGCAGGAAGTAAGTGATTATTTGGAGGACAGACAAAAACACCAAAGACTGATTAAC
AAGCTCGATAAAGAAGGCAAAAATGTTACTGGTACAAACTGGATTGATACAATATCTGAA
AAGTCTCCAGTTCTGAAGGCTACCTTGGAGAAACAAAATAACCGTGGAGGTAAAAAGGCT
AAAAATGTTGAAGAATCCAAAGATGAAACAGCTGTGGAAGGTGTGAGCAAAAGAACTAAG
AAGGTTGGAAAGCCACCTGGGATGCAAGAACTTTTGAGGCAAATACGGAACTGGGAAGAA
GCTGCGAAAAAGAAAGATACTCCAGTTGTTCAAAAGATTGTTTTGAGAGATTATCAGAAA
GAGCTGGCTCAAAAGGCTGTAGATGGCCATAACTCATTGATTGTTGCTCCTACAGGATCC
GGGAAAACGATAGTTGCTAAAGAAATAATCGAGAAGCATCTGATGAAATCCGATTCAAAA
TCTGTTATTTTTTTCACTGCTGAAACGACACTGGCACGCCAACAGTTTGATTTCTTTTCG
AGGCACATAGAGTCAGAAGATCATGAAAAAGTGAAAATGACCTATATTATTGGGGATAAA
GAAATGGAAATTCCTGTTGGACAGGCAATCAAGAGGAACAGATTGATCGTTTTAACTCCT
CAGATTCTAATTGATGAACTAAGGAGACCGTTGTCCTATATCAGTTTCAACAACATCTCG
ATGATGATATTCGATGAATGTCACAAAACAACTAAAAAACATCCTTACAAGATAATTATG
GATATGCTGATGGATTTTCTTCATGATAATCCGGATTCAAAAATGCAGATTGTTGGCCTT
ACTGCTTCGCCTGGTGTTGGAAAAGGAAAGACAAGAGAGAAGGTCATGGATAACCTGATA
ACGCTGCTTGCGAATTTGAATGTGACCATTTGCCCAACAACCGTCGTCACATACATTGAT
GAGCTCAAACAGCATCAGAATGAAATTAAAGAAAGCTTTGTTAGAGTTGAAGACGAGGTT
GACATCTTTACATCAAAAATCCTCAAAGCAATGGAACTCATCGAGCAGAAAATTAGAGAT
CAAGATGTACTGGGCACTCAAGTTAAGGAACCTCCTTTGAATAAAGGAAAGCAAATGTAT
GAGAACTGGGTCATAGATTTGATTCAATATTCCAGAAGTCAAATTAGGGATCAAGAACTT
TCATGGCTTATCACAACATATGCTGAACATCTCCGGATGTACCACACTTTACTGTATTAC
ACCAAGCACATTCCCAATGCTATGGATCTGACTGACAGCAAGATGAATTTCAATCAAGAA
GGACATACCATGAAATTTCTGATTAAGATTAACAGAGAACTTCGGCAGAACCAAAACCTT
GCAAAAGTTCCCCTGATGCATCGTCTGTTTGATATTCTGAAACGAGAATTCAGAGAAAAC
CCTGAGTCTAGATGCATCATATTTGTGCGCAGAAAGAAAGTTGCGGCCAGACTTGTGGAA
GAGATGAAAGAAAATTCTGAATTCAGCCACTTAGAACCTAAGCTGCTCACTGGTGTTCGT
GAGCATTCTAATTTAGGAGGTATGACAAAAGTGGAACAAGAAGATTCTCTGAATGCATTT
CGTGATGGAATCAGTAAAGTACTTGTAGCTACCTCTGTTGCTGAAGAAGGATTGGATATT
AAAGCTTGTAATTTGGTGATCATGTACAACTATGTTACAAACGAGATTGGTAGAATTCAG
AGAGCAGGTCGTGGAAGAGCTGAAAATAGCAGATCTATCTTGATTGCATCATTTGATAGC
AACCATATCAAGCAAGAAAAAGACAATGAAATCTGTGAAGAAGCATCAAAAATAGCTATT
CAAGACGTTGGTGACATGCCTTTGGAATATCTTGCATTGCAGATAAAAGAGATTCAGAAG
AAACATAGAAAAGAACGAAAAAGAGAAACCGAGGCAAAAATCAGAAAAACTATGGAAGCT
GCTAAATGGAACTTGCTATGCGGCAAGTGCAAAACTGTTATCACGTCAGCTGATCATTTG
CGACACATAAATAATCAGCACAAGGTTGTTATAGATGAGACATTATTCACTCGCATCCGT
GAAACTCCATGGAGTCAAAGTCGCGAACTTGCTGCAGATGTTGATGCAGTTGCATCGTTG
TTTTGTGTACAGAGGAATTGCAGGGAAAAACTTGGCTTGACGATGCAGTATCAGAGTAAG
CGCTATCCATCGCTTACAATCAAGGCTTTGGTTCTTCAGAACGTGGAAACTGAAGAAATG
AGAATGGCCTCTACTTGGTCTAAGTGTCCGTTTGCTGTGTCGAAATCGATTGATTCCGAT
GATGATGATACGGAGAAAATCGGAGTGCAAGCTGAGGATGAGAGCTATACTGAATCACCT
ATTGATTTCGGAATGATAGAAACTGATTTTGCAAAGAGTGATGAAATTTCTGATTATGTT
ATATTGGAATCTTTGGATTGTAATCAGTAA
| SMART |
Prot_kinase_dom (IPR000719) - T[1-252] 2.2E-29 |
| ProSiteProfiles |
Prot_kinase_dom (IPR000719) - T[1-252] 36.16 |
| SUPERFAMILY |
Kinase-like_dom_sf (IPR011009) - T[7-267] 4.18E-53 |
| Pfam |
Prot_kinase_dom (IPR000719) - T[8-252] 1.0E-43 |
| ProSitePatterns |
Ser/Thr_kinase_AS (IPR008271) - T[110-122] . |
| Gene3D |
KEN_sf (IPR038357) - T[255-374] 4.0E-6 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[371-582] 9.4E-22 |
| Pfam |
Helicase/UvrB_N (IPR006935) - T[373-544] 2.9E-18 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[383-562] 19.538 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[420-560] 1.05E-39 - T[725-860] 1.05E-39 |
| CDD |
Helicase_C (IPR001650) - T[713-855] 2.18038E-16 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[725-899] 16.23 |
| Pfam |
Helicase_C (IPR001650) - T[732-847] 3.9E-18 |
| SMART |
Helicase_C (IPR001650) - T[756-848] 6.8E-17 |
| ProSiteProfiles |
RLR_CTR (IPR021673) - T[913-1043] 23.182 |
| Gene3D |
RLR_C_sf (IPR038557) - T[919-1045] 9.5E-24 |
| Pfam |
RLR_CTR (IPR021673) - T[924-1035] 1.5E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX58_HUMAN | 28.447 % | 224 | 3.29E-62 |
| DDX58_HUMAN | 30.627 % | 278 | 5.39E-79 |
| IFIH1_HUMAN | 28.302 % | 213 | 1.1E-56 |