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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S35.g10317.01.t

Possible name(s)

TUBB2A; TUBB2B; TUBB4B

Location

S35 [418,937 / 426,254]

Sequences

Amino acid sequence

Length: 448

>Harore.CG.MTP2014.S35.g10317.01.p
MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDIQLERINVYYNEASGGKYV
PRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVMDVV
RKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLVSKMREEYPDRMMITFSVVPSPKVSDTVV
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
RFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
AACDPRHGRYLTVACLFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATAEEEGEFDEDEEEEDQEAD

Nucleotide sequence

Length: 1,603

>Harore.CG.MTP2014.S35.g10317.01.t
AGTTTCAGATTCAAAAGTAAGATTCAAATCTAAAATAACAATTCGAAATGCGTGAAATAG
TTCATTTACAAGCGGGCCAATGTGGAAATCAAATTGGTTCTAAGTTTTGGGAAGTCATAT
CTGACGAGCATGGAATTGATCCCACCGGTACATACCACGGAGATAGTGATATACAACTTG
AAAGAATCAACGTCTACTACAATGAAGCATCGGGAGGAAAATATGTTCCCCGTGCCGTTC
TCGTCGATCTTGAGCCAGGAACAATGGATTCCGTAAGATCTGGACCATTTGGGCAACTTT
TCCGTCCGGATAACTTTGTTTTTGGACAAAGTGGTGCTGGTAATAACTGGGCGAAAGGCC
ATTACACAGAAGGAGCTGAATTAGTTGATTCCGTTATGGACGTTGTTAGGAAAGAGGCAG
AGGGATGTGATTGCCTTCAGGGTTTCCAGCTAACGCATTCATTAGGAGGAGGCACAGGAT
CTGGAATGGGAACGCTCCTCGTCAGTAAAATGCGTGAAGAATATCCCGACAGAATGATGA
TCACTTTTAGCGTCGTGCCGTCTCCAAAAGTATCCGATACTGTAGTAGAACCTTACAATG
CGACGCTTTCCGTCCATCAGTTGGTAGAAAATACCGATGAAACCTACTGTATCGACAACG
AAGCACTGTACGACATCTGCTTCCGGACTCTGAAGCTTACTACGCCAACGTATGGAGATT
TGAACCATCTCGTTTCAGCTACGATGAGTGGCGTAACGACATGTCTCCGTTTCCCAGGAC
AACTGAACGCCGATCTTCGTAAACTCGCTGTAAACATGGTGCCCTTCCCCCGTCTTCACT
TCTTCATACCCGGATTTGCTCCCCTTACCAGCAGAGGTAGTCAGCAATACCGAGCCTTGA
CTGTTCCTGAATTGACCCAACAGATGTTCGATTCTAAAAACATGATGGCTGCTTGTGATC
CTCGTCATGGAAGATATCTCACAGTCGCATGTTTGTTCCGTGGTCGTATGTCGATGAAGG
AAGTTGATGAGCAAATGCTGAACGTGCAAAACAAAAACAGCTCCTACTTTGTCGAATGGA
TTCCAAACAATGTGAAGACTGCAGTGTGTGATATCCCACCCCGTGGATTGAAAATGTCTT
CAACTTTCATTGGGAACAGTACAGCTATTCAGGAGCTGTTCAAACGCATTTCGGAGCAGT
TCACTGCCATGTTCCGTCGTAAAGCGTTTTTGCATTGGTACACTGGAGAGGGTATGGATG
AGATGGAATTCACAGAGGCCGAAAGCAATATGAACGACTTGGTCAGTGAATATCAGCAAT
ACCAGGATGCAACTGCCGAAGAGGAAGGAGAGTTTGACGAGGATGAAGAAGAGGAGGATC
AGGAAGCAGATTAGGAGCTGTTCAAACGCATTTCGGAGCAGTTCACTTCTATGTTCCGTC
GTAAAGCGTTTTTGCATTGGTACACTGGAGAGGGTATGGATGAGATGGAATTCACAGAAG
CCGAAAGCAACATGAACGACTTGGTCAGTGAATATCAGCAATACCAGGATGCAACTGCCG
AAGAGGAAGGAGAGTTTGACGAGGAGGAAGAAGATGAGGATCA

InterProScan

Gene3D
Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-263] 5.5E-129
ProSitePatterns
Beta-tubulin_BS (IPR013838) - T[1-4] .
SUPERFAMILY
Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-243] 2.49E-103
Pfam
Tubulin_FtsZ_GTPase (IPR003008) - T[3-211] 2.0E-69
PRINTS
Tubulin (IPR000217) - T[10-30] 3.1E-105 - T[51-70] 3.1E-105 - T[93-104] 3.1E-105 - T[106-130] 3.1E-105 - T[132-150] 3.1E-105 - T[151-172] 3.1E-105 - T[176-189] 3.1E-105 - T[190-210] 3.1E-105 - T[370-398] 3.1E-105
PANTHER
Beta_tubulin (IPR002453) - T[12-445] 0.0
PANTHER
Tubulin (IPR000217) - T[12-445] 0.0
PRINTS
Beta_tubulin (IPR002453) - T[41-58] 9.5E-122 - T[88-99] 9.5E-122 - T[108-126] 9.5E-122 - T[152-164] 9.5E-122 - T[212-224] 9.5E-122 - T[230-239] 9.5E-122 - T[245-258] 9.5E-122 - T[265-281] 9.5E-122 - T[311-329] 9.5E-122 - T[329-343] 9.5E-122 - T[347-370] 9.5E-122 - T[377-388] 9.5E-122 - T[412-430] 9.5E-122
SMART
Tubulin_FtsZ_GTPase (IPR003008) - T[47-244] 1.6E-71
ProSitePatterns
Tubulin_CS (IPR017975) - T[140-146] .
SUPERFAMILY
Tub_FtsZ_C (IPR008280) - T[244-429] 8.55E-84
SMART
Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[246-383] 1.2E-48
Pfam
Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[261-381] 5.6E-42
Gene3D
Tubulin/FtsZ_C_sf (IPR037103) - T[264-373] 2.0E-56
Gene3D
Tubulin_C (IPR023123) - T[374-445] 4.1E-36

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TBB4B_HUMAN 96.487 % 850 0
TBB2B_HUMAN 95.349 % 850 0
TBB2A_HUMAN 95.116 % 847 0