- Transcript 'Cisavi.CG.ENS81.R60....' >
- Transcript 'Boleac.CG.SB_v3.S156...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Boleac.CG.SB_v3.S28....' >
- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S35.g14044.01.t
Possible name(s)
HMGB1; HMGB2; HMGB3
Gene model
Location
S35 [284,047 / 285,335]
Amino acid sequence
Length: 203
>Harore.CG.MTP2014.S35.g14044.01.p
MGRKDPNKPRGKMTAYAFFVQTCRQEHKKKHPDEQVVFAEFSKKCAERWQGMTPKEKKIF
VDMANRDKVRYDREMEGYTPPAGDAKKIVKRKKDPNAPKRPQSAFFLFCADRRAEIKKIN
PEFTVGDIAKCLGKQWSETTPEIKTKYEENGKIEKEKYLKVMEKYRAQQKKEAEGAKRQK
KEKEESSSSSGSGSSSGSDQESD
Nucleotide sequence
Length: 1,061
>Harore.CG.MTP2014.S35.g14044.01.t
TTAAGTAAAACAAAATGGGTAGAAAAGATCCGAACAAGCCACGCGGTAAGATGACAGCGT
ATGCTTTTTTCGTTCAAACTTGCCGCCAAGAGCACAAGAAGAAACACCCCGATGAACAAG
TGGTGTTCGCAGAATTTTCCAAAAAATGCGCAGAGAGATGGCAGGGTATGACTCCGAAGG
AGAAAAAAATTTTCGTTGACATGGCCAACCGAGACAAGGTACGATATGACAGAGAAATGG
AGGGCTATACTCCCCCTGCTGGTGATGCTAAAAAAATAGTGAAAAGAAAAAAGGATCCCA
ATGCACCCAAGCGGCCACAATCTGCATTTTTCCTGTTCTGTGCAGACCGTAGGGCTGAGA
TTAAAAAAATCAATCCCGAATTCACTGTTGGAGATATTGCTAAATGTCTCGGAAAGCAGT
GGTCTGAAACAACTCCCGAAATCAAGACAAAATATGAAGAAAACGGAAAGATCGAGAAAG
AAAAATATCTCAAGGTGATGGAAAAGTATAGGGCGCAACAGAAAAAGGAAGCCGAGGGAG
CAAAGAGGCAGAAGAAGGAAAAGGAGGAGTCGTCCTCTTCCTCTGGCTCCGGAAGCTCAA
GTGGTAGCGACCAAGAGAGCGATTAGACTGGAAGGAATCCAACCAAAGCTAAAATAACGG
AGGTGTACTTTTTTGCAACCCCGAAATCAGCCATTTTGTACATAGACTTGCATTGTATCC
GTAGCCCGAGGACGTAACCATTTGTTCTGTTTGCTGACGCCATGCTAAATATGTTTGTCG
AAATCTAAACTAAAAGTTTTTCAAACTTGGAGTGCTGTTTATAGTTGGAAGTTGAAGATT
TTACCAGTTTGTCGTTAGGATAAGTTTTTCATACTGATATAGTTGTTGAAAAAAAATTTA
GCTTACTTAATCACTGGATCTTTGTTGGCTTAGACCAATGTTGTATTATTATCCTGACAG
CACTCTCGTTAGAATGGATTTATTACATGGCTGTGTTTTTTTTGTTCCTTTGTGAATTTC
AGGTTTCTTGTTTTTTACCATGCGAGAAATTCCTTTCAAAA
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[1-80] 5.2E-32 - T[85-169] 1.2E-24 |
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[4-81] 6.28E-25 - T[85-168] 5.24E-25 |
| Pfam |
HMG_box_dom (IPR009071) - T[6-78] 5.3E-23 - T[98-166] 2.7E-20 |
| SMART |
HMG_box_dom (IPR009071) - T[8-80] 1.3E-21 - T[97-167] 2.8E-20 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[9-79] 16.341 - T[98-166] 17.926 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMGB1_HUMAN | 57.803 % | 192 | 2.57E-62 |
| HMGB2_HUMAN | 58.382 % | 191 | 7.22E-62 |
| HGB1A_HUMAN | 54.335 % | 179 | 5.25E-57 |