- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S367.g07172.01.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
S367 [63,206 / 84,314]
Amino acid sequence
Length: 1,287
>Harore.CG.MTP2014.S367.g07172.01.p
MITSFYLGWIIVALGTSVSKAVHIPAEVPRPPTIIEQTEGITYALQKLEVRLKCLADALP
NVKESKGYYWKKDGEVITNITQEDDLTNNSSIVMSKYNGTIWIRGSANFTTENLLPYEGK
YQCFASNERGTAMSRFIYLKVAKKVSYIVPADKTIKVTEGESKKIACRQNNAEDIETWWN
FLPDTVKLSNRIAKAPDGTIVFSNIVAQEDNGLKFYCTLKHLPTRTSRDGPHYTLSVKPD
EFPPDFEPTIILPKYDDEQRVVLLGEELKLACIAIGRPTPSVLWTKTDEVLAGDRYEMRD
FNRTLYIPTVTYDDAGTYTCTVSNHFENRKRDISVIVEAKPYFPDNDKQPTNTIKVPGDE
VTITCAPEGTPTPTVEWFINGEPIEETTDDPRRDVYSDSIVVRNLTDQDTVVYQCLGRNK
HGIVMGQAFVNVVVSKPFEVTGNSYFYRKMEGDSVEMQCKMFASPAAVYTWTKNEITDGD
LTDDNRFKKKKNNALKITKINLQDSGRYTCEASNEHGEDSVEMTLLVLKKTMVRPAVEQV
RVTNGKDVVMEVKLDVDANLTVKSVKWFKDGSVMYDGEEMELLSVTMSDAGVYKVTVKTD
MDSATTSVELIVQDVPSPPRNAIFTANPSDAYVGTLTWEPPVTDNNSPIEDYKVEYEADE
LYPDRWVPLIDSVEGDVTTVEVQYLESWLSYIFRVWAKNGIGWSVSSSNKTASYKTPPSI
PRINPTGVCGKGNAPDNMVITWNQVEPLKYSGQGFGYEVSWCLESNCTWFEVFVSNDTTS
YVVTNTNPYTRYLINVTSANNLGSTDGVESVIGYSGEDVPQSSPNLTDSDISDDGTVTIS
WDPPPEDDTRGLVTGYRVRVTEKETGKYEDRSAGPNEVRFYLNDLTPNTEYQISIAVKNS
AGESNLSAPTYVKTPEGFSGPPDNLTAVRRTVGTITIAWQEPKEKNGIISSYRVKYLTAV
ENVTLENTTEIQHNTTASSIVKLEDLLVGVSYNVTVCAATGRGYSDDCATLTISTRQPEA
PGENQYKIYVDDNLANITWRTLEEEEENGIPTEYYYIEHKKARDVNEEWIRSEKISTRAG
VKHLYNVGELEPGTQYEIRLIATNDIGTTKSKSKIFRTSGVSKQQATAGIIGQAWFIAIL
CIIPLLLLLLIAICLVQRRKGGKYSVSEKEEQLVKLESQPMNNDDKGKYSVNPNDDTVKE
NANNISEAHINNPLQSRRTRGDSVGGNSIEVFGSGDTRDFEEDGSFIDQYGVDRRSNSKS
EGVESPASDGTKDVSEVQKKLLDESGN
Nucleotide sequence
Length: 3,864
>Harore.CG.MTP2014.S367.g07172.01.t
ATGATTACTTCTTTTTATCTTGGTTGGATAATTGTAGCGCTTGGTACGTCTGTGAGCAAG
GCCGTTCACATCCCTGCCGAAGTACCTCGACCGCCAACAATCATAGAACAGACCGAAGGA
ATAACGTATGCCCTGCAGAAATTAGAAGTAAGACTAAAATGTCTGGCAGATGCACTACCA
AATGTAAAGGAATCTAAAGGGTACTACTGGAAAAAAGACGGGGAAGTTATTACGAATATC
ACACAAGAAGACGACCTAACCAACAACAGCTCTATCGTTATGTCGAAATACAACGGTACC
ATTTGGATAAGAGGAAGCGCAAACTTTACCACTGAGAATCTGCTGCCTTACGAGGGAAAG
TATCAATGTTTTGCTAGTAACGAAAGAGGAACTGCTATGTCAAGATTTATTTATTTGAAA
GTCGCCAAAAAGGTTTCATACATCGTTCCAGCAGACAAAACCATAAAAGTCACAGAGGGC
GAATCTAAAAAAATAGCTTGTCGGCAAAATAACGCAGAAGACATTGAAACTTGGTGGAAT
TTTTTACCCGATACTGTGAAGCTATCTAACCGAATTGCGAAGGCTCCGGACGGGACGATA
GTATTTTCGAATATTGTAGCACAGGAGGACAACGGTCTGAAGTTTTATTGTACTCTGAAA
CATCTACCAACACGAACATCACGAGATGGTCCACATTACACCCTCTCTGTTAAGCCAGAT
GAATTTCCCCCGGACTTTGAGCCAACGATTATTCTACCCAAATATGACGACGAACAACGG
GTAGTATTGCTTGGAGAAGAACTAAAACTGGCCTGTATTGCAATTGGAAGGCCGACACCT
TCGGTATTATGGACTAAGACAGATGAAGTGCTGGCGGGTGATCGATATGAAATGCGTGAT
TTTAACAGAACACTTTACATTCCCACCGTGACTTACGACGATGCCGGAACATATACTTGT
ACTGTGAGTAACCACTTCGAAAACCGCAAACGTGACATTTCGGTGATAGTCGAAGCAAAG
CCTTACTTCCCTGACAACGACAAACAGCCTACGAACACGATAAAAGTACCAGGTGATGAG
GTCACTATTACCTGTGCCCCAGAAGGAACGCCGACACCCACAGTGGAGTGGTTTATTAAC
GGAGAACCAATTGAAGAAACGACAGACGATCCTAGAAGAGATGTATACAGTGACAGCATA
GTTGTAAGAAATTTAACTGACCAGGACACTGTGGTTTATCAGTGCCTAGGACGCAACAAA
CACGGCATCGTGATGGGCCAGGCATTCGTAAACGTCGTTGTTTCCAAGCCTTTTGAAGTG
ACTGGAAATTCCTATTTTTATCGAAAAATGGAAGGCGACTCGGTCGAAATGCAATGCAAG
ATGTTCGCATCGCCCGCAGCAGTTTACACTTGGACGAAAAATGAAATTACGGATGGTGAT
TTAACTGACGATAACAGGTTCAAAAAGAAGAAAAACAACGCCCTCAAAATTACAAAGATA
AATTTGCAAGACTCTGGTCGGTACACTTGTGAAGCGTCTAATGAACATGGTGAAGATTCT
GTCGAAATGACTTTACTCGTCTTGAAAAAAACTATGGTGAGACCTGCTGTCGAACAAGTT
CGTGTTACAAATGGGAAGGACGTCGTAATGGAGGTCAAGCTGGATGTCGATGCAAACCTG
ACAGTCAAATCGGTAAAATGGTTTAAAGATGGCAGCGTCATGTATGACGGTGAAGAAATG
GAGTTACTGAGTGTGACTATGTCAGACGCAGGAGTTTACAAAGTGACAGTGAAAACAGAT
ATGGACAGTGCTACTACATCAGTCGAGTTGATTGTCCAAGACGTTCCCAGTCCGCCTAGA
AACGCTATATTCACAGCGAATCCATCAGACGCGTACGTCGGCACTTTGACGTGGGAGCCA
CCGGTCACTGACAATAATTCACCCATAGAAGATTATAAAGTGGAATACGAAGCTGATGAA
CTTTATCCTGACCGATGGGTACCTTTGATCGACTCTGTAGAAGGGGATGTTACTACAGTT
GAAGTTCAATATCTCGAAAGCTGGTTATCCTACATCTTTCGGGTATGGGCGAAAAACGGT
ATCGGTTGGAGTGTGTCATCAAGTAACAAAACTGCTTCGTATAAAACACCGCCCTCAATA
CCTAGGATAAATCCTACCGGCGTCTGTGGTAAGGGGAATGCACCAGACAACATGGTAATT
ACGTGGAATCAAGTCGAACCACTTAAATATTCCGGCCAAGGATTTGGATATGAAGTCAGC
TGGTGTCTCGAATCCAACTGCACTTGGTTTGAAGTTTTCGTTTCAAACGATACTACTTCA
TACGTCGTCACAAATACCAATCCCTATACCAGATATCTCATTAATGTGACCAGCGCCAAC
AATCTCGGTTCCACTGACGGTGTAGAATCCGTCATTGGCTATTCCGGAGAAGATGTACCT
CAATCTTCGCCTAACCTTACCGATTCCGATATTAGCGACGATGGCACCGTTACAATTTCG
TGGGATCCGCCACCTGAAGACGATACCAGAGGTCTTGTTACTGGATATCGCGTACGAGTT
ACAGAAAAAGAAACAGGAAAATATGAAGATCGATCTGCGGGACCAAACGAAGTGAGATTT
TATCTAAACGACCTGACTCCAAACACGGAATACCAAATATCAATTGCAGTGAAAAACAGT
GCTGGAGAGAGCAACTTATCGGCTCCTACTTACGTGAAAACTCCAGAAGGATTCTCTGGG
CCACCGGATAACTTAACTGCGGTGAGGCGCACTGTGGGTACGATCACTATAGCATGGCAG
GAACCGAAGGAAAAGAACGGAATTATATCAAGCTATCGTGTGAAATATCTCACTGCTGTT
GAAAACGTGACGCTGGAAAACACGACGGAAATACAGCATAATACGACAGCAAGCAGTATA
GTCAAATTAGAAGACCTGTTAGTGGGTGTGTCGTATAATGTGACTGTGTGTGCGGCCACG
GGACGCGGCTACAGCGACGATTGCGCCACTCTGACTATTTCAACGCGGCAACCGGAAGCT
CCGGGAGAAAATCAATACAAGATATATGTTGATGACAACTTAGCGAACATTACCTGGCGA
ACGTTAGAAGAAGAAGAAGAAAACGGAATTCCGACAGAATACTATTATATTGAACACAAA
AAGGCTAGAGATGTAAATGAGGAATGGATAAGGTCAGAAAAAATCTCGACTCGTGCCGGG
GTGAAACATCTGTATAACGTGGGGGAACTGGAACCGGGGACTCAGTATGAAATTCGATTG
ATCGCTACAAACGACATCGGCACGACGAAATCAAAATCGAAAATTTTCAGAACAAGTGGA
GTATCAAAACAACAGGCGACTGCTGGAATCATCGGACAAGCATGGTTCATAGCTATTCTA
TGCATCATTCCCCTGCTCCTTCTACTGCTAATTGCCATCTGCCTTGTTCAACGCAGAAAA
GGCGGGAAATATTCAGTATCAGAAAAGGAAGAGCAGTTGGTAAAACTTGAATCTCAGCCA
ATGAACAACGATGACAAAGGAAAGTATAGTGTTAATCCTAACGACGATACTGTCAAGGAA
AATGCCAATAACATCTCGGAGGCACATATTAATAACCCTTTGCAGTCTCGACGCACTCGT
GGTGATAGCGTCGGGGGTAATTCCATAGAGGTGTTCGGAAGCGGGGACACCCGTGATTTC
GAAGAAGACGGTTCATTTATTGATCAATACGGCGTCGATCGCAGATCGAACAGCAAATCG
GAAGGCGTGGAATCGCCTGCCAGTGACGGTACCAAAGACGTAAGTGAAGTGCAGAAAAAG
TTACTTGATGAGTCGGGAAACTGA
| Gene3D |
Ig-like_fold (IPR013783) - T[17-140] 5.8E-12 - T[248-339] 9.8E-19 - T[344-434] 4.3E-17 - T[440-532] 6.7E-18 - T[533-614] 5.7E-8 - T[615-712] 6.0E-16 - T[718-818] 1.5E-15 - T[819-915] 2.0E-20 - T[916-1020] 5.1E-15 - T[1021-1125] 3.7E-10 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[25-134] 8.702 - T[150-236] 6.76 - T[248-334] 13.439 - T[344-431] 11.334 - T[451-524] 11.243 - T[535-611] 6.542 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[31-142] 2.6E-7 - T[257-344] 4.05E-18 - T[347-434] 6.33E-15 - T[439-529] 1.42E-16 - T[538-621] 9.56E-12 |
| SMART |
Ig_sub (IPR003599) - T[39-142] 3.6 - T[152-238] 200.0 - T[257-338] 4.1E-8 - T[350-435] 1.7E-7 - T[444-528] 3.1E-10 - T[537-613] 5.6E-4 |
| Pfam |
Ig_I-set (IPR013098) - T[260-337] 3.8E-14 - T[450-527] 1.4E-13 |
| SMART |
Ig_sub2 (IPR003598) - T[263-327] 7.2E-13 - T[356-422] 1.5E-7 - T[450-517] 3.0E-13 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[614-818] 6.66E-24 - T[819-1016] 4.87E-33 - T[1003-1119] 4.11E-10 |
| CDD |
FN3_dom (IPR003961) - T[616-712] 1.41708E-12 - T[717-814] 1.56847E-7 - T[820-914] 1.86705E-13 - T[920-1015] 1.55574E-10 - T[1030-1118] 5.63734E-6 |
| SMART |
FN3_dom (IPR003961) - T[616-704] 6.9E-6 - T[722-805] 0.018 - T[820-904] 2.9E-12 - T[919-1005] 3.8E-8 - T[1018-1109] 4.1E-4 |
| Pfam |
FN3_dom (IPR003961) - T[617-706] 7.9E-9 - T[725-803] 1.4E-8 - T[826-907] 4.1E-12 - T[921-1005] 3.5E-10 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[618-719] 18.888 - T[724-818] 14.959 - T[820-917] 20.45 - T[921-1018] 18.004 - T[1020-1121] 11.519 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[1158-1252] 3.2E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 28.571 % | 459 | 5.51E-140 |
| NCHL1_HUMAN | 27.605 % | 412 | 1.65E-123 |
| L1CAM_HUMAN | 28.101 % | 415 | 2.71E-124 |