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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S370.g10991.01.t

Possible name(s)

VTI1A; VTI1B

Gene model

Harore.CG.MTP2014.S370.g10991

Location

S370 [14,277 / 23,302]

Sequences

Amino acid sequence

Length: 323

>Harore.CG.MTP2014.S370.g10991.01.p
MDLLGGTAEYLNTNYYNSIFLIYAAHLRVLPPLLVLWILYSQAVPKLGNRLSLKHFFKMS
NIFETYELQFSSLTAEITSKLGRVPSFYGVEKKTVISVIERQLDEAQELLEQMDLEVRDV
PGSERGKLMSRVKSYQKEYTNLESQLKQHKTTVKDAAKMREELLEYEDNSANDQRTRLLD
NTETLERSNRRLEAGYRIAVETEKIGQEVIDNLQRDRETINRTRNRLREGDDNLGKSSRV
LNSMMRRIIQNRLLTVMIVIIMLIVIIVVIYFISTRHKAIISSTLYRHVLEVCMMSSFPG
SHHDEARLLSDVMTLQLKLVVCL

Nucleotide sequence

Length: 1,875

>Harore.CG.MTP2014.S370.g10991.01.t
ATGGATTTGTTGGGTGGCACCGCTGAGTATTTAAATACGAATTATTACAACAGCATATTT
CTAATTTATGCTGCTCACCTGAGAGTTCTGCCACCACTATTGGTCCTGTGGATTTTGTAC
AGCCAAGCAGTCCCGAAATTAGGAAATAGGCTTTCTTTGAAGCACTTCTTCAAAATGTCT
AATATCTTTGAAACCTACGAGCTCCAGTTTTCATCTCTGACGGCTGAAATTACAAGTAAA
CTTGGGAGAGTGCCGTCGTTTTATGGAGTCGAGAAGAAAACTGTAATAAGTGTGATTGAA
CGACAACTGGATGAAGCACAAGAGCTGTTGGAACAAATGGACCTAGAGGTCAGAGACGTC
CCCGGTTCAGAAAGAGGAAAGCTTATGTCTCGAGTGAAAAGTTATCAAAAGGAATATACA
AATCTTGAATCACAGTTGAAACAGCATAAAACTACTGTGAAAGATGCAGCAAAGATGAGA
GAAGAGCTACTAGAATATGAAGATAATTCTGCCAATGACCAGAGAACTCGCCTCTTAGAT
AACACAGAAACGTTGGAAAGGAGCAACAGGCGTTTAGAAGCGGGATATCGCATAGCAGTG
GAGACGGAAAAAATAGGGCAAGAAGTTATTGACAACTTGCAAAGAGATAGGGAAACGATC
AATCGAACCAGAAACAGGTTAAGAGAAGGTGACGATAACTTGGGAAAGAGTTCTAGAGTT
TTGAATTCCATGATGAGAAGAATCATCCAAAATCGACTCCTCACAGTGATGATCGTAATT
ATAATGCTCATAGTAATCATCGTCGTCATTTACTTCATATCAACACGGCACAAAGCCATT
ATATCATCAACACTGTACCGTCACGTGCTTGAAGTTTGTATGATGTCGTCGTTTCCAGGT
TCGCATCACGATGAAGCGCGTTTATTGTCAGACGTAATGACATTACAGTTGAAACTAGTT
GTCTGTTTATAGCCGCTTATTTCATTTCAACTTGTTAGTATAGTCGTACTTTCATTGCGT
GAATGTTCTCCGTTAGTCATGAATGGGTACAATGTCGAATCCCTGCTCCAATGGGTTGGA
TGTAGAGCAATTATACATGGATCGGACATATTTATTGCCTTCGACTCAAAAGATGTAACA
AGTAGGGTTCAGTTAACTTGTATTTGCATACAACCCAAATTACATGACAAGAAAATTTCA
AAGACAAACAATTTTCTTTATGAATACACAGGCTTACCATATTTGTCTGCATCCAAACAT
TCTGGGACATTCTATACATTCAATAGGATTCCGACAGCCTTCCTACTAAAACTCTCAAAA
GTAGTAACACCAAGCCTAACACAAGATGAACTATACTTGAATCTGTTGCAAACCATGATC
ACAATCATTCATATACCAAAGCAGAAATTAATATGCCATGTGCAACGATTCATAGGAACT
GATAAGCAGTGTAAGTCGCCTTCATCAAAATACTGTAGCTCTCTTGAAATTTTCATACTT
CAGAATACTGCATTGCATTATACGACACCAGGGACTACTGCAACATATATTAGTTCATCG
AAATCTTCTGAAAAATGCAATAGCATAAGTAGTTACCACATGTCTAGACATTGGAAATTT
TTGCCTCCGACTCCCACCGATCTCGATTTCTCAAGCACCCTTTGTGCATTGGTTTCAAAC
CAACAGATACGTTTGTCAATCCCTGTTTACCTCGTCCAGGAGTTAAATGTTCATAGAGGT
GTATTGCAGAGAGTGACCCTTTTTCCATGGACTTTGTCTCCAACGGACAAGGTCCAGTCG
ACCGAAATTAGAAAATGTCAAAAGCCTTTCAATCTGGGAGTGTCAGCTATGTGTCGCTAC
CATAAATACTACTGA

InterProScan

Gene3D
v-SNARE_N_sf (IPR038407) - T[58-158] 1.3E-30
SUPERFAMILY
SNARE (IPR010989) - T[64-149] 1.88E-22
Pfam
Vesicle_trsprt_v-SNARE_N (IPR007705) - T[70-148] 5.6E-23
SMART
T_SNARE_dom (IPR000727) - T[177-244] 5.6E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VTI1A_HUMAN 55.708 % 233 1.48E-76
VTI1B_HUMAN 30.088 % 91.7 9.94E-22