- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S372.g12103.01.t
Possible name(s)
ADGRB2; ADGRB3; HMCN1
Gene model
Location
S372 [11,262 / 15,881]
Amino acid sequence
Length: 612
>Harore.CG.MTP2014.S372.g12103.01.p
MAVVGTVKSRRGGQRSGCTRIIFNNFKVHHCTIFEVLVKLFSNSPIANMIVTFIIHGAIL
LSSLTTSTAACGCKTPLYNRQPCEYGSWLGLEQCTSLGCCFDGRTSYFALAGKPRCYVKI
SGCKQSMCDIRLQDREVCGFRYMGKEMCERSGCCFDDKRMYPMCFRARHVPTVQTSMRAT
AQYIPRVTYFTQRTEHVTTSQPMTMTERITTQPKTTTSAIPITTKTTTSATPVTTKPITS
ARPITKKPTTSATPVTTTEKIRIFYGPLGVYNFAGFKIFAQCPKPGEKVRECVGDFKDRN
TCYRHFCCWLDGTGCYLPKVNILEWPNDNSTTEMKFLWSPWTTWSACPTSCRPTNQMRFR
ECLSEKAGQIPCQGLKEETRPCKLSCDSMWTNWGSWTSCSYTCGPGTKTRTRLCRQKGNL
TLPRNCLGGKFMQQEVCNAELCSEWSQWKELGCPVTCGGGIGRIERKCLNKNKLIIQDGV
CRRRAKVCGSTPCPIPPQAEQKKNWGSWSKCSNPCGVGMRERIRVCDGTHAGQDDASGSG
DETLKRCDATEEELCNQDLCTSWSPWLPTAGCTASCGTGLQTEVRSCTNTSSSIVPPKCT
LRVNYCNMHNCT
Nucleotide sequence
Length: 1,839
>Harore.CG.MTP2014.S372.g12103.01.t
ATGGCAGTTGTGGGCACTGTGAAATCGAGAAGGGGCGGACAGAGATCAGGATGCACTAGA
ATTATTTTCAACAACTTCAAAGTGCATCATTGCACAATATTTGAAGTTTTAGTTAAGCTA
TTCTCCAATTCACCGATTGCAAATATGATCGTCACTTTCATAATTCACGGAGCAATTCTG
CTCAGCAGTCTGACTACTAGTACAGCAGCTTGTGGTTGCAAGACTCCACTTTACAACAGG
CAACCATGCGAATACGGAAGTTGGCTGGGTTTGGAGCAATGTACGTCACTCGGATGTTGT
TTTGACGGCAGAACGTCATATTTCGCTCTAGCGGGAAAACCGAGATGTTACGTGAAAATA
AGCGGATGTAAACAAAGCATGTGCGATATTCGACTGCAAGATCGTGAAGTCTGTGGATTC
CGATACATGGGAAAAGAAATGTGTGAAAGAAGCGGATGTTGTTTTGATGATAAACGAATG
TATCCAATGTGTTTCAGAGCCAGACATGTTCCAACAGTTCAAACTTCAATGCGAGCCACT
GCTCAGTATATACCTCGAGTGACATACTTCACTCAACGTACAGAACACGTGACAACTTCG
CAACCAATGACCATGACAGAGAGGATAACAACGCAACCGAAAACAACTACATCCGCAATT
CCTATCACGACGAAAACAACTACATCCGCCACTCCAGTCACGACGAAACCAATTACATCC
GCTAGACCTATCACGAAGAAACCAACTACATCCGCCACGCCGGTCACGACGACAGAAAAA
ATTCGAATTTTTTACGGCCCTCTCGGTGTTTATAATTTTGCTGGTTTTAAAATATTTGCT
CAATGTCCGAAGCCGGGTGAAAAGGTCAGAGAATGTGTGGGAGATTTTAAAGACAGAAAT
ACATGCTATCGTCACTTCTGTTGCTGGCTAGATGGAACTGGATGTTATTTGCCTAAAGTT
AATATACTGGAATGGCCAAATGATAATTCAACAACGGAAATGAAATTCTTATGGTCGCCA
TGGACGACGTGGTCAGCATGCCCTACCTCGTGTAGGCCAACCAATCAAATGCGTTTTAGA
GAATGTTTATCTGAAAAAGCGGGCCAGATCCCGTGTCAGGGCCTCAAGGAGGAAACGAGA
CCGTGCAAGCTCTCGTGCGACTCCATGTGGACGAATTGGGGATCGTGGACAAGTTGCAGC
TACACGTGCGGACCCGGAACAAAAACGCGAACGAGATTGTGTCGTCAGAAAGGAAACCTG
ACGTTACCTAGAAACTGCTTGGGCGGGAAATTTATGCAACAGGAGGTTTGTAATGCGGAA
TTGTGCAGTGAATGGTCGCAGTGGAAGGAACTGGGGTGTCCGGTGACGTGTGGTGGAGGA
ATTGGTCGGATTGAAAGGAAATGTTTAAATAAAAACAAGCTAATAATTCAAGATGGAGTT
TGCAGGCGACGAGCGAAAGTATGCGGAAGTACACCCTGTCCAATCCCTCCACAGGCCGAA
CAAAAAAAAAATTGGGGATCATGGAGCAAATGTTCAAACCCATGTGGGGTAGGAATGCGA
GAAAGAATTCGAGTTTGTGACGGAACACACGCGGGACAAGACGATGCGTCGGGCAGTGGT
GACGAAACATTGAAACGTTGTGACGCAACAGAAGAAGAATTATGTAATCAAGATTTATGT
ACGTCATGGTCACCATGGTTACCGACAGCAGGTTGTACTGCCTCTTGTGGTACAGGTCTA
CAAACAGAAGTTAGATCCTGTACTAACACAAGCTCATCAATTGTCCCTCCAAAATGCACG
TTGAGAGTTAATTATTGTAACATGCATAACTGTACGTAA
| ProSiteProfiles |
P_trefoil_dom (IPR000519) - T[69-120] 9.755 - T[126-168] 10.51 |
| Pfam |
P_trefoil_dom (IPR000519) - T[128-166] 4.4E-6 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[335-386] 6.9E-9 - T[387-442] 6.1E-10 - T[501-560] 5.1E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[335-383] 10.176 - T[387-443] 11.222 - T[499-561] 9.909 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[337-383] 2.22E-9 - T[386-442] 8.76E-12 - T[503-535] 7.72E-7 |
| SMART |
TSP1_rpt (IPR000884) - T[338-387] 1.1E-6 - T[390-443] 2.3E-9 - T[445-494] 0.54 - T[502-561] 1.9E-6 - T[563-612] 0.024 |
| Pfam |
TSP1_rpt (IPR000884) - T[339-384] 6.7E-6 - T[392-442] 7.7E-7 - T[443-493] 0.15 - T[504-560] 3.4E-7 - T[564-611] 0.018 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 32.476 % | 109 | 1.35E-24 |
| AGRB2_HUMAN | 31.416 % | 90.9 | 8.24E-19 |
| AGRB3_HUMAN | 31.95 % | 90.1 | 1.52E-18 |